Query 034783
Match_columns 83
No_of_seqs 119 out of 1416
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 4.2E-19 1.5E-23 111.8 7.1 81 2-82 396-483 (491)
2 2cfq_A Lactose permease; trans 98.2 1.1E-06 3.6E-11 54.9 3.5 69 2-70 338-408 (417)
3 1pw4_A Glycerol-3-phosphate tr 98.1 6.6E-06 2.3E-10 51.0 5.5 65 2-66 145-211 (451)
4 4aps_A DI-OR tripeptide H+ sym 98.0 8.9E-07 3.1E-11 55.8 0.7 67 2-68 412-478 (491)
5 1pw4_A Glycerol-3-phosphate tr 97.9 3.7E-06 1.3E-10 52.2 2.3 59 2-60 372-432 (451)
6 2xut_A Proton/peptide symporte 97.9 4E-06 1.4E-10 53.3 1.8 71 2-72 431-513 (524)
7 2gfp_A EMRD, multidrug resista 97.7 5.9E-06 2E-10 50.4 -0.0 66 2-67 114-180 (375)
8 4aps_A DI-OR tripeptide H+ sym 97.6 0.00026 9E-09 44.5 7.2 59 2-60 134-195 (491)
9 3o7q_A L-fucose-proton symport 97.5 0.00042 1.4E-08 42.8 6.3 66 2-67 143-236 (438)
10 2xut_A Proton/peptide symporte 97.3 0.00058 2E-08 43.3 5.3 58 2-59 135-196 (524)
11 4gc0_A D-xylose-proton symport 96.8 0.0096 3.3E-07 37.4 7.9 64 2-65 152-223 (491)
12 3o7q_A L-fucose-proton symport 96.4 0.011 3.9E-07 36.4 5.9 47 2-50 373-421 (438)
13 2gfp_A EMRD, multidrug resista 93.9 0.026 9E-07 34.2 1.8 37 2-39 317-353 (375)
14 2cfq_A Lactose permease; trans 69.3 0.18 6E-06 31.3 -3.4 40 11-50 137-176 (417)
15 1dx7_A Light-harvesting protei 36.2 31 0.0011 15.1 2.2 22 42-63 25-46 (48)
16 1nkz_B Light-harvesting protei 34.7 31 0.0011 14.6 3.5 22 42-63 17-38 (41)
17 1lgh_B LH II, B800/850, light 32.0 37 0.0013 14.7 3.5 22 42-63 22-43 (45)
18 3ff5_A PEX14P, peroxisomal bio 29.4 28 0.00095 15.7 1.3 16 64-79 38-53 (54)
19 1wrg_A LH-1, light-harvesting 26.8 52 0.0018 14.9 2.0 21 42-62 25-45 (55)
20 2w84_A Peroxisomal membrane pr 25.5 35 0.0012 16.3 1.3 16 64-79 43-58 (70)
21 2ww9_A SEC sixty-one protein h 24.9 1.2E+02 0.0043 19.9 4.2 35 46-80 369-403 (490)
22 1aie_A P53; oligomer, DNA; 1.5 23.6 18 0.0006 14.4 0.1 10 3-12 1-10 (31)
23 1r9w_A Replication protein E1; 22.6 26 0.00089 19.2 0.6 12 6-17 107-118 (145)
24 1f08_A Replication protein E1; 22.4 26 0.0009 19.2 0.6 12 6-17 110-121 (148)
25 3mmy_B Nuclear pore complex pr 21.8 70 0.0024 14.5 2.7 21 60-80 33-54 (56)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=4.2e-19 Score=111.77 Aligned_cols=81 Identities=28% Similarity=0.463 Sum_probs=69.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ 74 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~ 74 (83)
+|+||++.|++++|+++.++|+++++.++++|.+.+ .+....|+++++++++..++.++++|||||+++||+|
T Consensus 396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 699999999999999999999999999999998764 2334578899999999999999999999999999999
Q ss_pred HHHhhccC
Q 034783 75 ASITKLSR 82 (83)
Q Consensus 75 ~~~~~~~~ 82 (83)
+.++++++
T Consensus 476 ~~f~~~~~ 483 (491)
T 4gc0_A 476 ALWEPETK 483 (491)
T ss_dssp GGTC----
T ss_pred HHhCCCCc
Confidence 88866543
No 2
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.20 E-value=1.1e-06 Score=54.88 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=54.2
Q ss_pred CCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 2 AEIFPINMKGLAGSLV-IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
+|.+|++.|+++.++. ...+++++++.|.+.+.+.+ .+....|.+.+++.+++.+..+...+|++..++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 5889999999999995 67788999999999998887 455566777777777777766666787665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.10 E-value=6.6e-06 Score=51.03 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=55.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+++.++......++.++.+.+...+.+ .+ +.+.|++.+++.++..++.++.+||+.
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 689999999999999999999999999999888777 56 778888888888887777777788754
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.03 E-value=8.9e-07 Score=55.77 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=51.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
.|.+|++.|+++.|+.+....+++++.+.+.+.+.+.+....|..+++++++..+..++..++.++.
T Consensus 412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999998877775666778888888888777777767776554
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.94 E-value=3.7e-06 Score=52.17 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
.|.+|++.|+++.|+.+....+ +.++.+.+.+.+.+ .+....+.+.+++.++..++.++
T Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999 99999999999988 56667777777777776665544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.89 E-value=4e-06 Score=53.26 Aligned_cols=71 Identities=10% Similarity=-0.072 Sum_probs=44.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--h---------HHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-S--K---------TGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-~--~---------~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
+|..|++.|++++|+.+....+++++.+.+.+.+.+. + + ...|++++++.++..++.++..+++++++
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4778999999999999999999999999998887651 1 1 12266677777776666666677776665
Q ss_pred HHH
Q 034783 70 LEE 72 (83)
Q Consensus 70 ~~~ 72 (83)
.++
T Consensus 511 ~~~ 513 (524)
T 2xut_A 511 HYR 513 (524)
T ss_dssp ---
T ss_pred hhh
Confidence 544
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.67 E-value=5.9e-06 Score=50.38 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=53.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|++.|+++.++......++..+.+.+...+.+ .++...+.+.++...+..+..++.+||++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 577899999999999999999999999999887776 566777887777777766655667788654
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.64 E-value=0.00026 Score=44.52 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=44.9
Q ss_pred CCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINM--KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 2 ~Elfp~~~--R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
+|++|.+. |+.+.++.+....++..+.+.+...+.+ .++.+.|.+.++..++..+...+
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 6677777778889999999999888887 66777777776666555554443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.47 E-value=0.00042 Score=42.84 Aligned_cols=66 Identities=8% Similarity=-0.017 Sum_probs=48.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-h-------------------------hHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM-EW-S-------------------------KTGTFSIFWVICAAG 54 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~-~~-~-------------------------~~~~~~~~~~~~~~~ 54 (83)
+|.+|.+.|+++.++......++..+.+.+...+. .. + +.+.|.+.+....+.
T Consensus 143 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 222 (438)
T 3o7q_A 143 TVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLV 222 (438)
T ss_dssp HHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999988887 32 2 456666666665555
Q ss_pred HHHHHH-hcccCCC
Q 034783 55 VAFVTF-LVPETKG 67 (83)
Q Consensus 55 ~~~~~~-~~~et~~ 67 (83)
.+..++ ..||++.
T Consensus 223 ~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 223 ALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHCCCCCCTT
T ss_pred HHHHHHHcCCcccc
Confidence 554333 3465443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.26 E-value=0.00058 Score=43.34 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSL---VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
+|.+|++.|+++.++ ......++..+.+.+...+.+ .++.+.|.+.++..++..+...
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 588999999776666 778888899999988888877 5667777777666555544433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.84 E-value=0.0096 Score=37.36 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=39.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--------SKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|..|++.|++..++......++..+...+....... .++........+..+..++..+++||+
T Consensus 152 ~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 152 AELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 6999999999999988777766666666654444331 112223333333344444555678886
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.37 E-value=0.011 Score=36.37 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=35.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVI 50 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~ 50 (83)
.|.+|++ |+.+.++.. .+.+++++.+.+.+.+.+ .+ ....|.+.++.
T Consensus 373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4778877 888888877 678999999999999988 44 45555554433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=93.88 E-value=0.026 Score=34.17 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWS 39 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~ 39 (83)
.|.+| +.|+++.|+.+....++..+.+.+...+.+.+
T Consensus 317 ~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 317 MEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46778 89999999999999999999999888877633
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=69.28 E-value=0.18 Score=31.31 Aligned_cols=40 Identities=5% Similarity=-0.276 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034783 11 GLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVI 50 (83)
Q Consensus 11 ~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 50 (83)
+.+.+.....+.++..+.+.+...+.+.++...|++.++.
T Consensus 137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~ 176 (417)
T 2cfq_A 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC 176 (417)
T ss_dssp TCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 3334555455566777777777766665555555544444
No 15
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=36.25 E-value=31 Score=15.15 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 034783 42 GTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
..+..|.++.++.-++++.+-|
T Consensus 25 ~~~~~F~~iA~vAH~l~w~wrP 46 (48)
T 1dx7_A 25 SGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHTTHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777777776544
No 16
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=34.70 E-value=31 Score=14.62 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 034783 42 GTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
..+..|.++.++.-++++.+-|
T Consensus 17 ~~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 17 DGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777777777777776554
No 17
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=32.04 E-value=37 Score=14.70 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 034783 42 GTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
..+..|.++.++.-++++.+-|
T Consensus 22 ~~~~~F~~iA~vAH~L~~~wrP 43 (45)
T 1lgh_B 22 TTFSAFIILAAVAHVLVWVWKP 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777777777777776544
No 18
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=29.41 E-value=28 Score=15.70 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=10.5
Q ss_pred cCCCCCHHHHHHHHhh
Q 034783 64 ETKGRTLEEIQASITK 79 (83)
Q Consensus 64 et~~~~~~~~~~~~~~ 79 (83)
+.||.+.+|+++.+++
T Consensus 38 ~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHc
Confidence 3567777777776553
No 19
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=26.78 E-value=52 Score=14.87 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 034783 42 GTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~ 62 (83)
..+..|.++.++.-++++.+-
T Consensus 25 ~~~~~F~~iAvvAH~L~~~wr 45 (55)
T 1wrg_A 25 SSILVFFGVAAFAHLLVWIWR 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 346667777777777766543
No 20
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=25.51 E-value=35 Score=16.28 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=12.0
Q ss_pred cCCCCCHHHHHHHHhh
Q 034783 64 ETKGRTLEEIQASITK 79 (83)
Q Consensus 64 et~~~~~~~~~~~~~~ 79 (83)
+.||.+.+|+++.+++
T Consensus 43 ~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 4578888888887765
No 21
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=24.95 E-value=1.2e+02 Score=19.90 Aligned_cols=35 Identities=3% Similarity=0.012 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHhhc
Q 034783 46 IFWVICAAGVAFVTFLVPETKGRTLEEIQASITKL 80 (83)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~ 80 (83)
+|.++.++..++..++--+..+.+.+|+.+.++|.
T Consensus 369 iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~ 403 (490)
T 2ww9_A 369 TYSAFILVTGIWFADKWQAISGSSARDVALEFKDQ 403 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHc
Confidence 34444444444433444467777888877777654
No 22
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=23.58 E-value=18 Score=14.41 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=4.7
Q ss_pred CCCCcchHHH
Q 034783 3 EIFPINMKGL 12 (83)
Q Consensus 3 Elfp~~~R~~ 12 (83)
|+|+.++||+
T Consensus 1 E~ftL~VrGR 10 (31)
T 1aie_A 1 EYFTLQIRGR 10 (31)
T ss_dssp CCCCCCCCSH
T ss_pred CeEEEEeccH
Confidence 3444455543
No 23
>1r9w_A Replication protein E1; HPV-18, DNA-binding domain, viral replication, initiator protein; 1.80A {Human papillomavirus type 18} SCOP: d.89.1.2
Probab=22.61 E-value=26 Score=19.18 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=10.3
Q ss_pred CcchHHHHHHHH
Q 034783 6 PINMKGLAGSLV 17 (83)
Q Consensus 6 p~~~R~~~~s~~ 17 (83)
|++.|+.+.++.
T Consensus 107 PPK~RS~~aALf 118 (145)
T 1r9w_A 107 PPKLRSSVAALY 118 (145)
T ss_dssp CBCSSCHHHHHH
T ss_pred CCCccCcceeee
Confidence 899999888876
No 24
>1f08_A Replication protein E1; DNA-binding domain, initiator protein, helicase; 1.90A {Bovine papillomavirus} SCOP: d.89.1.2 PDB: 1ksx_A 1ksy_A
Probab=22.36 E-value=26 Score=19.24 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=10.1
Q ss_pred CcchHHHHHHHH
Q 034783 6 PINMKGLAGSLV 17 (83)
Q Consensus 6 p~~~R~~~~s~~ 17 (83)
|++.|+.+.++.
T Consensus 110 PPK~RS~~aALf 121 (148)
T 1f08_A 110 PPKIRGLSAALF 121 (148)
T ss_dssp CBCCSCHHHHHH
T ss_pred CCCCCCcceeee
Confidence 889999888876
No 25
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=21.82 E-value=70 Score=14.50 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=14.6
Q ss_pred HhcccCCCCCHHHHH-HHHhhc
Q 034783 60 FLVPETKGRTLEEIQ-ASITKL 80 (83)
Q Consensus 60 ~~~~et~~~~~~~~~-~~~~~~ 80 (83)
-.+|+-++++.||+. +++..+
T Consensus 33 s~M~~Y~~~S~EELR~eDY~~g 54 (56)
T 3mmy_B 33 TAMKEYESKSLEELRLEDYQAN 54 (56)
T ss_dssp GGSTTTTTSCHHHHHHHHHHTT
T ss_pred ecchhhhcCCHHHHHHHHHHcc
Confidence 357888999999875 344443
Done!