BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034787
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 59/75 (78%), Gaps = 4/75 (5%)
Query: 13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
RT+R T+ +R F+ DA+VE K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68
Query: 69 GKLGRWKINFMSTQK 83
GKLG+WKINF+ST K
Sbjct: 69 GKLGKWKINFVSTLK 83
>sp|P80268|NUO2_SOLTU NADH-ubiquinone oxidoreductase 18 kDa subunit (Fragment)
OS=Solanum tuberosum PE=1 SV=2
Length = 30
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 27 SADALVEVKPGEIGMVSGIPEEHLRRRVVI 56
+++ALVE+KPGEIGMVSGIP+EHLRR VVI
Sbjct: 1 ASEALVEIKPGEIGMVSGIPDEHLRRFVVI 30
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+I ++G+PEEH++ R+ I+ PAR Q G +WK+ F
Sbjct: 60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEF 101
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 26 FSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
+ D ++V P ++G+PEEH++ R+V I+ PAR Q G +WK+ F
Sbjct: 53 ITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,848,782
Number of Sequences: 539616
Number of extensions: 921369
Number of successful extensions: 1727
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 15
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)