Query 034787
Match_columns 83
No_of_seqs 133 out of 273
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 99.6 5.7E-16 2E-20 105.5 4.0 39 41-82 4-42 (108)
2 2jya_A AGR_C_3324P, uncharacte 99.5 5.2E-15 1.8E-19 100.6 3.7 30 52-81 4-33 (106)
3 2e4m_C HA-17; botulinum toxin, 29.1 22 0.00077 25.0 1.5 20 63-82 34-53 (146)
4 3cux_A Malate synthase; TIM ba 26.7 26 0.00089 28.7 1.7 38 40-80 74-116 (528)
5 3cuz_A MSA, malate synthase A; 21.6 37 0.0013 27.8 1.7 38 40-80 77-119 (532)
6 2kl8_A OR15; structural genomi 12.3 96 0.0033 19.7 1.5 29 23-51 26-55 (85)
7 3dwl_F Actin-related protein 2 11.3 41 0.0014 24.2 -0.5 56 1-60 1-57 (168)
8 2vpz_A Thiosulfate reductase; 10.7 22 0.00075 28.7 -2.4 29 35-63 297-326 (765)
9 2e7z_A Acetylene hydratase AHY 10.3 16 0.00055 29.1 -3.2 28 36-63 259-286 (727)
10 1k8k_F P20, ARP2/3 complex 20 9.9 60 0.002 23.3 -0.1 56 1-60 1-57 (168)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=99.59 E-value=5.7e-16 Score=105.53 Aligned_cols=39 Identities=31% Similarity=0.554 Sum_probs=33.5
Q ss_pred cccCCcHHHhhceeeeecCCCCcccCCCCCCCCeEEeeecCC
Q 034787 41 MVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQ 82 (83)
Q Consensus 41 ~vSG~P~e~~~R~VrIy~Pak~AmQSG~~~t~~W~lefd~~~ 82 (83)
...|.|+. |+||||+|+|||||||++++++|+||||+.+
T Consensus 4 ~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~ 42 (108)
T 2lju_A 4 SMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSC 42 (108)
T ss_dssp -CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCS
T ss_pred ccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCC
Confidence 44566655 8999999999999999999999999999854
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=99.52 E-value=5.2e-15 Score=100.61 Aligned_cols=30 Identities=37% Similarity=0.646 Sum_probs=28.9
Q ss_pred ceeeeecCCCCcccCCCCCCCCeEEeeecC
Q 034787 52 RRVVIYTPARTATQQGSGKLGRWKINFMST 81 (83)
Q Consensus 52 R~VrIy~Pak~AmQSG~~~t~~W~lefd~~ 81 (83)
++||||+|+|||||||++++++|+||||+.
T Consensus 4 m~arIy~Pak~amQSG~~~t~~W~lefe~~ 33 (106)
T 2jya_A 4 MSAKIYRPAKTAMQSGTAKTNVWVLEFDAE 33 (106)
T ss_dssp CEEEEECCSSCCCTTTTCCSCCEEEEEEEE
T ss_pred cEEEEeCCCCCccccCCCCCCceEEEEecC
Confidence 789999999999999999999999999984
No 3
>2e4m_C HA-17; botulinum toxin, hemagglutinin subcomponent complex; 1.85A {Clostridium botulinum}
Probab=29.06 E-value=22 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=15.9
Q ss_pred cccCCCCCCCCeEEeeecCC
Q 034787 63 ATQQGSGKLGRWKINFMSTQ 82 (83)
Q Consensus 63 AmQSG~~~t~~W~lefd~~~ 82 (83)
-.|.|.++..+|++|++...
T Consensus 34 f~~~ssanNQKWkl~Y~s~k 53 (146)
T 2e4m_C 34 FLNTSSLDNQKWKLEYISSS 53 (146)
T ss_dssp EEECCSSGGGCEEEEECSTT
T ss_pred EeccCCcCcceeEEEEeecC
Confidence 35678888899999998643
No 4
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=26.72 E-value=26 Score=28.66 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccccCCcHHHhhceeeeecCCCC-----cccCCCCCCCCeEEeeec
Q 034787 40 GMVSGIPEEHLRRRVVIYTPART-----ATQQGSGKLGRWKINFMS 80 (83)
Q Consensus 40 ~~vSG~P~e~~~R~VrIy~Pak~-----AmQSG~~~t~~W~lefd~ 80 (83)
=.|.++|.++..|++-||-|+-+ |..|| ...|.+|||.
T Consensus 74 W~~~~~p~~l~~RR~~l~~P~~~km~~kAl~sg---Ad~vi~DlED 116 (528)
T 3cux_A 74 WTIAKLPKDLEDRRVEITGPVDRKMVINALNSG---AHLFMADFED 116 (528)
T ss_dssp CCCCCCCGGGSCCSEEEEEESCHHHHHHHHTSS---CSEEEEESST
T ss_pred CccCCCChHhhcCeeEEECCCCHHHHHHHHhcC---CCEEEecccc
Confidence 45678999999999999999864 33454 4578899875
No 5
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A*
Probab=21.62 E-value=37 Score=27.76 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=29.7
Q ss_pred ccccCCcHHHhhceeeeecCCCC-----cccCCCCCCCCeEEeeec
Q 034787 40 GMVSGIPEEHLRRRVVIYTPART-----ATQQGSGKLGRWKINFMS 80 (83)
Q Consensus 40 ~~vSG~P~e~~~R~VrIy~Pak~-----AmQSG~~~t~~W~lefd~ 80 (83)
=.|.++|+++..|++-||-|+-+ |..|| ...|.+|||.
T Consensus 77 W~va~~p~~l~~rRs~L~~P~~rkm~~kAl~sg---AD~vi~DlED 119 (532)
T 3cuz_A 77 WKIRGIPADLEDRRVEITGPVERKMVINALNAN---VKVFMADFED 119 (532)
T ss_dssp CCCSCCCGGGSCCSEEEEEECCHHHHHHHHTSS---SSEEEEESST
T ss_pred CccCCCChhhhhceeEEEccCCHHHHHHHHhcC---CCEEEEcCcc
Confidence 45778999998899999999864 44555 4579999875
No 6
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=12.33 E-value=96 Score=19.71 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=17.3
Q ss_pred ccccccccceecccCccc-cccCCcHHHhh
Q 034787 23 SRAFSADALVEVKPGEIG-MVSGIPEEHLR 51 (83)
Q Consensus 23 ~r~fs~~~~~~~k~~e~~-~vSG~P~e~~~ 51 (83)
+|.|+........-.|.. .++|+|+...+
T Consensus 26 arkfagtvtytldgndleiritgvpeqvrk 55 (85)
T 2kl8_A 26 ARKFAGTVTYTLDGNDLEIRITGVPEQVRK 55 (85)
T ss_dssp HTTTTCEEEEEECSSCEEEEEESCCHHHHH
T ss_pred HHhhcceEEEEecCCeeEEEEecChHHHHH
Confidence 567777554433333433 37899987543
No 7
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=11.33 E-value=41 Score=24.22 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=31.1
Q ss_pred ChhhHHHhhhccc-ccccccCccccccccccceecccCccccccCCcHHHhhceeeeecCC
Q 034787 1 MAQSLQRIWSHGR-TVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPA 60 (83)
Q Consensus 1 m~~~l~r~~~~~~-~~r~~~~p~~r~fs~~~~~~~k~~e~~~vSG~P~e~~~R~VrIy~Pa 60 (83)
||++|+=...--+ +|-++++ .+.|++..+-.-..+|+++ +.++|++--.+.|++-.
T Consensus 1 Ma~tl~pYl~~Vr~tL~aAlc--l~nF~Sq~vErhnkPEVE~--~~s~elll~p~~I~Rne 57 (168)
T 3dwl_F 1 MSNTLRPYLNAVRSTLTASLA--LEEFSSEIVERQSQPEVEV--GRSPEILLKPLVVSRNE 57 (168)
T ss_dssp --CCHHHHHHHHHHHHHHHTC--CCCCCCSSSTTCCCCHHHH--CCCTTTBCCCEEEESSS
T ss_pred CCcchhhHHHHHHHHHHHHHH--HhcCchHHHhhcCCCceec--cCCHhHhcCceEEeecC
Confidence 5566554433222 1223332 6899998765543346665 45567777788887644
No 8
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=10.66 E-value=22 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=23.3
Q ss_pred ccCccccccCCcHHHhhceeeeec-CCCCc
Q 034787 35 KPGEIGMVSGIPEEHLRRRVVIYT-PARTA 63 (83)
Q Consensus 35 k~~e~~~vSG~P~e~~~R~VrIy~-Pak~A 63 (83)
.++.+.-++|+|.|.+.+-++.|. -++.+
T Consensus 297 tpe~~a~itGv~~~~I~~lA~~~a~~a~~~ 326 (765)
T 2vpz_A 297 TPEWAEKHTEIPAQVIREVAREMAAHKPRA 326 (765)
T ss_dssp CHHHHHHHHCSCHHHHHHHHHHHHTTTTSE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhCCCE
Confidence 345688899999999999999997 66544
No 9
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=10.32 E-value=16 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=22.3
Q ss_pred cCccccccCCcHHHhhceeeeecCCCCc
Q 034787 36 PGEIGMVSGIPEEHLRRRVVIYTPARTA 63 (83)
Q Consensus 36 ~~e~~~vSG~P~e~~~R~VrIy~Pak~A 63 (83)
++.+..++|+|+|.+.+-++.|.-++.+
T Consensus 259 pe~~a~itGv~~~~I~~~A~~~a~a~~~ 286 (727)
T 2e7z_A 259 LDKVAEITGCDAGEIRKAAVMFATESPA 286 (727)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHSSSE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCe
Confidence 4568889999999998888888765543
No 10
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=9.88 E-value=60 Score=23.34 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=31.7
Q ss_pred ChhhHHHhhhccc-ccccccCccccccccccceecccCccccccCCcHHHhhceeeeecCC
Q 034787 1 MAQSLQRIWSHGR-TVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPA 60 (83)
Q Consensus 1 m~~~l~r~~~~~~-~~r~~~~p~~r~fs~~~~~~~k~~e~~~vSG~P~e~~~R~VrIy~Pa 60 (83)
||++|+=....-+ +|-++++ ...|++..+..-..+|++.. .+.|++--.+.|++-.
T Consensus 1 Ma~tl~pYl~~vr~tL~aAlC--L~nF~Sq~vErhnkPEVE~~--~s~elLl~pl~i~Rne 57 (168)
T 1k8k_F 1 MTATLRPYLSAVRATLQAALC--LENFSSQVVERHNKPEVEVR--SSKELLLQPVTISRNE 57 (168)
T ss_dssp -CCSHHHHHHHHHHHHHHHCC--CCCCCCSSSTTCCCCHHHHC--CCGGGBCCCEEEESSS
T ss_pred CCcccchHHHHHHHHHHHHHH--HhcCcHHHHhhcCCCceeec--CCHHHhccceEEEecC
Confidence 5666654443322 1223332 68999987655444466663 4467676788887744
Done!