Query 034787
Match_columns 83
No_of_seqs 133 out of 273
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 10:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034787.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034787hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jioa2 c.81.1.1 (A:4-600) Per 12.8 5.8 0.00042 28.9 -3.1 30 35-64 271-300 (597)
2 d1eu1a2 c.81.1.1 (A:4-625) Dim 12.0 7.4 0.00054 28.4 -2.7 32 37-68 288-319 (622)
3 d1g8ka2 c.81.1.1 (A:4-682) Ars 11.7 15 0.0011 27.4 -1.2 28 35-62 342-369 (679)
4 d1tmoa2 c.81.1.1 (A:5-631) Tri 11.0 6.2 0.00045 29.0 -3.4 33 36-68 292-324 (627)
5 d1h0ha2 c.81.1.1 (A:1-812) Tun 10.7 12 0.00088 29.3 -2.0 23 36-58 334-356 (812)
6 d1ogya2 c.81.1.1 (A:12-681) Pe 9.9 13 0.00094 27.7 -2.0 29 35-63 300-328 (670)
7 d1kqfa2 c.81.1.1 (A:34-850) Fo 9.9 14 0.001 28.9 -1.8 29 35-63 339-371 (817)
8 d2ovrb2 b.69.4.1 (B:2365-2706) 9.2 61 0.0045 18.7 1.3 15 67-81 327-341 (342)
9 d1mxia_ c.116.1.1 (A:) Hypothe 8.7 97 0.0071 18.0 2.2 25 42-66 103-130 (156)
10 d1vqqa1 d.17.4.5 (A:27-138) Pe 8.2 58 0.0042 19.4 1.0 10 72-81 95-104 (112)
No 1
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=12.81 E-value=5.8 Score=28.86 Aligned_cols=30 Identities=10% Similarity=0.347 Sum_probs=24.2
Q ss_pred ccCccccccCCcHHHhhceeeeecCCCCcc
Q 034787 35 KPGEIGMVSGIPEEHLRRRVVIYTPARTAT 64 (83)
Q Consensus 35 k~~e~~~vSG~P~e~~~R~VrIy~Pak~Am 64 (83)
.++.+.-++|+|+|.+.+-+++|.-++.++
T Consensus 271 tpe~aa~itGv~~~~I~~~a~~~a~~~~~~ 300 (597)
T d2jioa2 271 RPEKVAEICRVPVEQIYGAARAFAESAATM 300 (597)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHSSSEE
T ss_pred CHHHHHHHHcCCHHHHhHHHHHHHhccceE
Confidence 345678899999999999889988777554
No 2
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.03 E-value=7.4 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=25.3
Q ss_pred CccccccCCcHHHhhceeeeecCCCCcccCCC
Q 034787 37 GEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68 (83)
Q Consensus 37 ~e~~~vSG~P~e~~~R~VrIy~Pak~AmQSG~ 68 (83)
+.+.-++|+|+|.+.+.++.|--+|.+...|.
T Consensus 288 e~aa~itGV~a~~I~~lA~~~a~~~~~~~~~~ 319 (622)
T d1eu1a2 288 EWAAEICGLPAEQIRELARSFVAGRTMLAAGW 319 (622)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHSSCEEEEECS
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhCCcceeeec
Confidence 34778999999999999999987777655543
No 3
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}
Probab=11.65 E-value=15 Score=27.40 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.0
Q ss_pred ccCccccccCCcHHHhhceeeeecCCCC
Q 034787 35 KPGEIGMVSGIPEEHLRRRVVIYTPART 62 (83)
Q Consensus 35 k~~e~~~vSG~P~e~~~R~VrIy~Pak~ 62 (83)
.++++.-++|+|.|.+.+.+++|.-+|.
T Consensus 342 tpe~aa~itGV~~e~I~~~A~~~a~~~~ 369 (679)
T d1g8ka2 342 SLDECSNITGVPVDMLKRAAEWSYKPKA 369 (679)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHSCCT
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhhc
Confidence 4567889999999999999999865553
No 4
>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}
Probab=11.05 E-value=6.2 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.9
Q ss_pred cCccccccCCcHHHhhceeeeecCCCCcccCCC
Q 034787 36 PGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68 (83)
Q Consensus 36 ~~e~~~vSG~P~e~~~R~VrIy~Pak~AmQSG~ 68 (83)
++.+.-++|+|.|.+.+.+|.|.-+|+++=-|.
T Consensus 292 pe~aa~itGVpa~~I~~~A~~~a~~~~~~~~g~ 324 (627)
T d1tmoa2 292 PEWAAPICGVEAHVIRDLAKTLVKGRTQFMMGW 324 (627)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHSCEEEEECS
T ss_pred HHHhhHhhCCCHHHHHHHHHHhhhcccccccCc
Confidence 445788999999999999999988777654443
No 5
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=10.68 E-value=12 Score=29.35 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.7
Q ss_pred cCccccccCCcHHHhhceeeeec
Q 034787 36 PGEIGMVSGIPEEHLRRRVVIYT 58 (83)
Q Consensus 36 ~~e~~~vSG~P~e~~~R~VrIy~ 58 (83)
++.+.-++|+|+|.+.+.+++|-
T Consensus 334 pe~va~itGVp~e~I~~vA~~~a 356 (812)
T d1h0ha2 334 LDKISAICGTPKELILKVYDAYC 356 (812)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 45688899999999999888883
No 6
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.94 E-value=13 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=23.8
Q ss_pred ccCccccccCCcHHHhhceeeeecCCCCc
Q 034787 35 KPGEIGMVSGIPEEHLRRRVVIYTPARTA 63 (83)
Q Consensus 35 k~~e~~~vSG~P~e~~~R~VrIy~Pak~A 63 (83)
.++.+.-++|+|.|.+.+-+++|--++.+
T Consensus 300 tpe~aa~itGV~~~~I~~~A~~~a~~~~~ 328 (670)
T d1ogya2 300 TLEKAAEISGVEPALLEELAELYADPDRK 328 (670)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHTTSTTSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhhccCc
Confidence 35568899999999999999999876643
No 7
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=14 Score=28.93 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=22.3
Q ss_pred ccCccccccCCcHHHhhceeee----ecCCCCc
Q 034787 35 KPGEIGMVSGIPEEHLRRRVVI----YTPARTA 63 (83)
Q Consensus 35 k~~e~~~vSG~P~e~~~R~VrI----y~Pak~A 63 (83)
.++.+.-++|+|+|.+.+.+++ +.|+|++
T Consensus 339 TpE~va~itGvp~e~I~~lA~~~a~~~~~~k~~ 371 (817)
T d1kqfa2 339 TPDVVENICGTPKADFLKVCEVLASTSAPDRTT 371 (817)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCE
T ss_pred CHHHHHhhcCCCHHHHHHHHHHHHHhhccccee
Confidence 3566889999999998877776 5666655
No 8
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.19 E-value=61 Score=18.73 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=9.4
Q ss_pred CCCCCCCeEEeeecC
Q 034787 67 GSGKLGRWKINFMST 81 (83)
Q Consensus 67 G~~~t~~W~lefd~~ 81 (83)
|+...+-|.+|||..
T Consensus 327 Gt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 327 GTEETKLLVLDFDVD 341 (342)
T ss_dssp SSSCCEEEEEECCCC
T ss_pred CCCeeEEEEEeCCCC
Confidence 344446788888753
No 9
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=8.70 E-value=97 Score=17.98 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=16.9
Q ss_pred ccCCcHHHhhc---eeeeecCCCCcccC
Q 034787 42 VSGIPEEHLRR---RVVIYTPARTATQQ 66 (83)
Q Consensus 42 vSG~P~e~~~R---~VrIy~Pak~AmQS 66 (83)
-.|+++|.+.+ ...||-|......|
T Consensus 103 ~~Gls~~~l~~~~~d~~v~IPm~g~~~S 130 (156)
T d1mxia_ 103 TRGIPMSILNEMPMEQKIRIPMTANSRS 130 (156)
T ss_dssp TTCSCHHHHTTSCGGGEEBCCCCTTCCC
T ss_pred CCcCCHHHHhhccCCeEEEcCCCCCCCe
Confidence 47999998765 23677787765544
No 10
>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=8.23 E-value=58 Score=19.42 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=8.2
Q ss_pred CCeEEeeecC
Q 034787 72 GRWKINFMST 81 (83)
Q Consensus 72 ~~W~lefd~~ 81 (83)
..|+|+|++.
T Consensus 95 ~~Wkv~W~ps 104 (112)
T d1vqqa1 95 GMWKLDWDHS 104 (112)
T ss_dssp SSEEECCCGG
T ss_pred CCEEEEeCcc
Confidence 5799999874
Done!