BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034791
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74347|COXM1_SCHPO COX assembly mitochondrial protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cmc1 PE=3 SV=1
Length = 104
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
MHP L ++ CA++I ++CH GKFFG+C +K +L C +++ K + N E
Sbjct: 1 MHPHLDVNNQKQCADLIRALEECH--KSFGKFFGECNTIKYELKACLTKDRNDKARLNRE 58
Query: 61 QSKKLKERLESLRK 74
++ K+ +E RK
Sbjct: 59 NARMRKKVIEENRK 72
>sp|Q6DHJ6|COXM2_DANRE COX assembly mitochondrial protein 2 homolog OS=Danio rerio
GN=cmc2 PE=3 SV=1
Length = 78
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1 MHPPLTLHRHP-MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
MHP L+ H H C ++I ++CH +H + KFFG C ++ + C R+E KR+ +
Sbjct: 1 MHPDLSPHLHTDECNQLITLLKQCHKEHNVLKFFGTCNDMDRAMRECLRKEYQTKRERSK 60
Query: 60 EQSKKLKERLESLRKE 75
+++++ RL+ KE
Sbjct: 61 AHAEEMRRRLKEQPKE 76
>sp|Q2NKR3|COXM2_BOVIN COX assembly mitochondrial protein 2 homolog OS=Bos taurus
GN=CMC2 PE=3 SV=1
Length = 79
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
MHP L+ H H C +I ++CH +H I KFFG C +L ++ +C + E KR +
Sbjct: 1 MHPDLSPHLHTEECNVLINLLKECHKNHSILKFFGHCNDLDREMRKCLKNEYMEKRNKSR 60
Query: 60 EQSKKLKERL 69
E +++RL
Sbjct: 61 ELGNAMRKRL 70
>sp|Q8K199|COXM2_MOUSE COX assembly mitochondrial protein 2 homolog OS=Mus musculus
GN=Cmc2 PE=2 SV=1
Length = 79
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
MHP L+ H H C +I ++CH +H I KFFG C +L ++ +C + E + +R +
Sbjct: 1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGHCNDLDREMRKCLKNEYSERRTRSR 60
Query: 60 EQSKKLKERL 69
E ++ RL
Sbjct: 61 EHGAAMRRRL 70
>sp|Q9NRP2|COXM2_HUMAN COX assembly mitochondrial protein 2 homolog OS=Homo sapiens
GN=CMC2 PE=1 SV=1
Length = 79
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
MHP L+ H H C +I ++CH +H I KFFG C ++ +L +C + E R +
Sbjct: 1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNEYVENRTKSR 60
Query: 60 EQSKKLKERL 69
E ++++L
Sbjct: 61 EHGIAMRKKL 70
>sp|Q28BU7|COXM2_XENTR COX assembly mitochondrial protein 2 homolog OS=Xenopus
tropicalis GN=cmc2 PE=3 SV=1
Length = 79
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 MHPPLTLHRHP-MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
MHP L+ H H C I +KCH ++ K+FG C + ++ +C ++E +R +
Sbjct: 1 MHPDLSSHLHTDECNVAINLLKKCHSENQFLKYFGQCNDFDREMRKCLKKEYEDRRAKSR 60
Query: 60 EQSKKLKERLESLRKET 76
+S+ +K+RL + K+
Sbjct: 61 ARSEHMKQRLLNAEKQA 77
>sp|Q8MNU7|COXM2_CAEEL COX assembly mitochondrial protein 2 homolog OS=Caenorhabditis
elegans GN=C35D10.17 PE=3 SV=1
Length = 102
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
M P L+ H H C +IE Q+CH + PIGK G C+ + +C ++E+ +R N
Sbjct: 1 MLPDLSPHLHTKECNMLIEFLQRCHSEKPIGKMIGKCSYWDEAVWQCTKKERIWRRDNNP 60
Query: 60 EQSKKLKERLESL 72
+++ E L SL
Sbjct: 61 AYKRRIVE-LRSL 72
>sp|B5FXK1|COXM2_TAEGU COX assembly mitochondrial protein 2 homolog OS=Taeniopygia
guttata GN=CMC2 PE=3 SV=1
Length = 75
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQ 49
MHP L+ H H C II +KCH +H + KFFG C ++ ++ +C ++
Sbjct: 1 MHPDLSPHLHTEECNLIISLLKKCHKEHNVLKFFGHCNDIDREMRKCLKK 50
>sp|Q3E7A4|COXM2_YEAST COX assembly mitochondrial protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CMC2 PE=1 SV=1
Length = 109
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQ 49
MHP L R C + I KCH + FG C K L++C ++
Sbjct: 1 MHPQLEAERFHSCLDFINALDKCHQKEYYKRIFGLCNNEKDALNKCLKE 49
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1
Length = 3660
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 18 EEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLESLRKETA 77
+E + HLDH + K + +E+K +++ + + + +K E K+L ERL +L+ +
Sbjct: 1497 QEVVQSHLDHCM-KLYKSLSEVKSEVETVIKTGRQIVQKQQTENPKELDERLTALKLQYN 1555
Query: 78 EAEAKF 83
E AK
Sbjct: 1556 ELGAKV 1561
>sp|P54466|YQFA_BACSU UPF0365 protein YqfA OS=Bacillus subtilis (strain 168) GN=yqfA PE=3
SV=1
Length = 331
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 26 DHPIGKFFGDCTEL-KIKLDRCFRQEKAVKRKA-NFEQSKKLKERLESLRKETAEAEAK 82
D IGK G + + + D+ Q KA +R+A Q ++++ R+E +R + EAEA+
Sbjct: 224 DVDIGKNIGAILQTDQAEADKNIAQAKAEERRAMAVAQEQEMRARVEEMRAKVVEAEAE 282
>sp|Q65H64|Y2729_BACLD UPF0365 protein BLi02729/BL01411 OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=BLi02729 PE=3 SV=1
Length = 330
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 26 DHPIGKFFGDCTEL-KIKLDRCFRQEKAVKRKA-NFEQSKKLKERLESLRKETAEAEAK 82
D IGK G + + + D+ Q KA +R+A Q ++++ R+E +R + EAEA+
Sbjct: 224 DVDIGKNIGAILQTDQAEADKNIAQAKAEERRAMAVAQEQEMRARVEEMRAKVVEAEAE 282
>sp|P89102|SEC5_YEAST Exocyst complex component SEC5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC5 PE=1 SV=1
Length = 971
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 21 QKCHLDHPIGKFFGDCTELKIKLDRCFRQ-EKAVKRKANFEQSKKLKERLESLRKETAE 78
Q HL +GK F ++K KLD+ +++ ++ K + K+ + +ESL K+ E
Sbjct: 143 QSIHLKQLVGKNFTKYVKIKNKLDQIYKEFDEKTNEKNQCDSPKENQINVESLNKKVDE 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,066,977
Number of Sequences: 539616
Number of extensions: 970493
Number of successful extensions: 5423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5339
Number of HSP's gapped (non-prelim): 109
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)