Query 034791
Match_columns 83
No_of_seqs 103 out of 149
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4148 Uncharacterized conser 99.9 2.4E-28 5.2E-33 162.9 6.4 71 1-71 1-71 (106)
2 PF08583 Cmc1: Cytochrome c ox 99.8 1.6E-20 3.5E-25 114.1 4.5 69 1-70 1-69 (69)
3 KOG3468 NADH:ubiquinone oxidor 90.7 1 2.2E-05 31.3 5.6 51 5-57 49-99 (128)
4 KOG4624 Uncharacterized conser 80.0 3 6.6E-05 28.3 3.5 37 12-49 32-68 (104)
5 PF05676 NDUF_B7: NADH-ubiquin 76.3 7.2 0.00016 24.2 4.2 45 10-56 19-63 (66)
6 PF06747 CHCH: CHCH domain; I 69.8 7.6 0.00016 20.1 2.8 33 13-47 1-33 (35)
7 PF00170 bZIP_1: bZIP transcri 54.3 42 0.00092 19.6 4.9 29 51-79 6-34 (64)
8 PF11326 DUF3128: Protein of u 53.6 20 0.00043 22.5 3.1 43 10-52 4-52 (84)
9 PF07716 bZIP_2: Basic region 49.8 48 0.001 18.9 5.2 29 50-78 4-32 (54)
10 PF14871 GHL6: Hypothetical gl 44.2 21 0.00046 24.3 2.3 22 1-28 37-58 (132)
11 cd00307 RuBisCO_small_like Rib 42.7 16 0.00035 23.6 1.4 23 13-35 44-68 (84)
12 PF00101 RuBisCO_small: Ribulo 41.0 17 0.00038 24.0 1.4 22 14-35 59-82 (99)
13 PF07051 OCIA: Ovarian carcino 39.9 21 0.00047 24.3 1.7 21 13-33 27-47 (111)
14 PLN00122 serine/threonine prot 33.5 1.8E+02 0.004 20.9 5.9 26 56-81 139-164 (170)
15 PF10200 Ndufs5: NADH:ubiquino 32.5 1.5E+02 0.0033 19.6 6.7 54 12-65 32-85 (96)
16 PF09738 DUF2051: Double stran 32.3 95 0.0021 24.3 4.4 31 49-79 2-33 (302)
17 cd03527 RuBisCO_small Ribulose 29.8 34 0.00073 22.7 1.4 22 14-35 60-83 (99)
18 smart00338 BRLZ basic region l 26.7 1.4E+02 0.003 17.3 4.6 29 50-78 5-33 (65)
19 KOG0493 Transcription factor E 26.0 43 0.00093 26.6 1.5 18 1-18 55-72 (342)
20 KOG0668 Casein kinase II, alph 26.0 43 0.00093 26.6 1.5 22 13-34 138-159 (338)
21 PF08912 Rho_Binding: Rho Bind 25.9 66 0.0014 20.2 2.1 48 12-61 11-61 (69)
22 PLN02150 terpene synthase/cycl 25.7 1.1E+02 0.0024 19.6 3.3 21 60-80 22-43 (96)
23 PF14193 DUF4315: Domain of un 22.8 2.2E+02 0.0047 18.2 4.6 27 52-78 3-29 (83)
24 PHA00458 single-stranded DNA-b 22.0 69 0.0015 24.5 1.9 20 9-28 48-67 (233)
25 PF10203 Pet191_N: Cytochrome 20.7 61 0.0013 20.0 1.2 16 34-49 3-18 (68)
26 PF06717 DUF1202: Protein of u 20.4 3.1E+02 0.0067 21.9 5.3 49 19-79 225-277 (308)
27 KOG0717 Molecular chaperone (D 20.2 1.1E+02 0.0023 26.0 2.8 36 46-81 298-333 (508)
28 PRK10376 putative oxidoreducta 20.1 1.6E+02 0.0034 21.8 3.5 34 13-47 143-176 (290)
29 PF03002 Somatostatin: Somatos 20.0 39 0.00084 16.2 0.2 11 26-36 8-18 (18)
No 1
>KOG4148 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=2.4e-28 Score=162.92 Aligned_cols=71 Identities=31% Similarity=0.707 Sum_probs=69.5
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 034791 1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLES 71 (83)
Q Consensus 1 MHP~L~~~~h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~n~~~ar~kr~r~~~ 71 (83)
|||||++++|.+|++||+||++||+.++|+||||.||++|++|++||+.+++...++.++++..+|+++..
T Consensus 1 MHP~L~~~~~~~C~dlInaL~eCH~~~~~~kfFG~CN~~k~eL~kCLk~~~~nnk~r~~~e~~~mRkkv~~ 71 (106)
T KOG4148|consen 1 MHPDLSPHLHEECNDLINALKECHKNHNILKFFGYCNDVKRELRKCLKNEYVNNKTRSREEGIAMRKKVFN 71 (106)
T ss_pred CCCccChhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988
No 2
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=99.81 E-value=1.6e-20 Score=114.12 Aligned_cols=69 Identities=42% Similarity=0.735 Sum_probs=66.2
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 034791 1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLE 70 (83)
Q Consensus 1 MHP~L~~~~h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~n~~~ar~kr~r~~ 70 (83)
|||+|..+.++.|.++|++|.+||++ ++.+++|.||+++.+|+.||++++...+..|+.+++..++|++
T Consensus 1 m~~~l~~~~~~~C~~~i~~~~~C~~~-~~~~~~~~C~~~~~~m~~Cl~~~~~~~~~~~~~~~~~~~~r~e 69 (69)
T PF08583_consen 1 MHPQLKEEAHKKCADEIEAFAECHKD-RTFKFVGKCREEKKAMNECLKEERNDERFRNREKAEYLKERIE 69 (69)
T ss_pred CChHHhHHHHHHhHHHHHHHHHHHhc-chHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999 8899999999999999999999999999999999999988864
No 3
>KOG3468 consensus NADH:ubiquinone oxidoreductase, NDUFB7/B18 subunit [Energy production and conversion]
Probab=90.65 E-value=1 Score=31.33 Aligned_cols=51 Identities=24% Similarity=0.456 Sum_probs=42.3
Q ss_pred CCCCCchhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHH
Q 034791 5 LTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKA 57 (83)
Q Consensus 5 L~~~~h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~ 57 (83)
|.......|..+...|.+|-+.+|. |+-.|.+++..-++|=..-.+.|-+.
T Consensus 49 l~l~~RDyCAH~lI~l~kCr~~~fp--~~~kC~~erh~~dkCEyed~vmRmke 99 (128)
T KOG3468|consen 49 LALGSRDYCAHLLIPLNKCRQDEFP--FPWKCEDERHVYDKCEYEDYVMRMKE 99 (128)
T ss_pred cCcchHHHHHHHHHHHHHhhcccCC--cchhccccccchhhhhHHHHHHHHHH
Confidence 3444456899999999999999985 78999999999999988877776543
No 4
>KOG4624 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.95 E-value=3 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.582 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHH
Q 034791 12 MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQ 49 (83)
Q Consensus 12 ~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ 49 (83)
.|++++..+.+|=..+. -..+..|-..-++|+.||.+
T Consensus 32 ~C~~~v~~~a~C~k~~~-v~vv~TCrkq~~elk~Cl~~ 68 (104)
T KOG4624|consen 32 KCSEFVQDFADCAKASG-VSVVPTCRKQNSELKECLTQ 68 (104)
T ss_pred HHHHHHHHHHHHHhcCC-eeeehhhHHHHHHHHHHHHH
Confidence 69999999999977664 48999999999999999975
No 5
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=76.33 E-value=7.2 Score=24.21 Aligned_cols=45 Identities=20% Similarity=0.460 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034791 10 HPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRK 56 (83)
Q Consensus 10 h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~ 56 (83)
...|..+...|.+|-.++|+ +.-.|..++.+-.+|--...+.|-+
T Consensus 19 RDyCAh~Li~l~kCrr~~~p--~~~~C~~erH~y~~C~y~dy~~Rmk 63 (66)
T PF05676_consen 19 RDYCAHLLIPLNKCRRDNFP--FPWKCEHERHEYEKCQYDDYVMRMK 63 (66)
T ss_pred hhhHHHHHHHHHHHHHhCCC--CcccCCcchhhHHHccHHHHHHHHH
Confidence 46799999999999988875 5579999999999999888887754
No 6
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=69.76 E-value=7.6 Score=20.12 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHH
Q 034791 13 CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCF 47 (83)
Q Consensus 13 C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CL 47 (83)
|...+.++-.|-.++.. =++.|.+.-.++..|-
T Consensus 1 C~~e~~~~~~Cl~~n~~--~~~~C~~~~~~~~~C~ 33 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNF--DWSKCRKEFKAYKECR 33 (35)
T ss_dssp THHHHHHHHHHHHCH-S--STCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC--cHHhhHHHHHHHHHHh
Confidence 56677777777777654 2777777777777773
No 7
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.27 E-value=42 Score=19.60 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034791 51 KAVKRKANFEQSKKLKERLESLRKETAEA 79 (83)
Q Consensus 51 R~~r~~~n~~~ar~kr~r~~~~~ke~~e~ 79 (83)
+..++.+|+..|+.-|.+-.+.-.+++..
T Consensus 6 ~~~rr~rNR~AAr~~R~RKk~~~~~Le~~ 34 (64)
T PF00170_consen 6 RERRRERNREAARRSRQRKKQYIEELEEK 34 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56788899999888877776666666544
No 8
>PF11326 DUF3128: Protein of unknown function (DUF3128); InterPro: IPR021475 This eukaryotic family of proteins has no known function.
Probab=53.57 E-value=20 Score=22.46 Aligned_cols=43 Identities=19% Similarity=0.479 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHhhhhhCc-hhhh--cc---CCchHHHHHHHHHHHHHH
Q 034791 10 HPMCAEIIEEFQKCHLDHP-IGKF--FG---DCTELKIKLDRCFRQEKA 52 (83)
Q Consensus 10 h~~C~~lI~aL~eCH~~~~-~~K~--~G---~CN~~k~~L~~CLk~ER~ 52 (83)
-++|....++|-.|.+-+. +..+ .| .|+....++..||+-...
T Consensus 4 ~~sC~~~fd~~~~C~S~~~q~~~yYryG~~~~C~~~~~df~~C~~~k~~ 52 (84)
T PF11326_consen 4 TMSCMDAFDELWFCYSPGGQFRNYYRYGEFDDCSQWWEDFKFCLRWKSK 52 (84)
T ss_pred CccHHHHHHHHHHcCCchHhheeeeecCCCccHHHHHHHHHHHHHhccC
Confidence 3589999999999998744 2222 24 499999999999988764
No 9
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=49.82 E-value=48 Score=18.89 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034791 50 EKAVKRKANFEQSKKLKERLESLRKETAE 78 (83)
Q Consensus 50 ER~~r~~~n~~~ar~kr~r~~~~~ke~~e 78 (83)
++..++.+|+..|+.-|.+-.+.-.+++.
T Consensus 4 ~~~~rR~rNr~AA~r~R~rkk~~~~~le~ 32 (54)
T PF07716_consen 4 EKRERRERNREAARRSRQRKKQREEELEQ 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566668998888777666555544443
No 10
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.21 E-value=21 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=15.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhhhhCc
Q 034791 1 MHPPLTLHRHPMCAEIIEEFQKCHLDHP 28 (83)
Q Consensus 1 MHP~L~~~~h~~C~~lI~aL~eCH~~~~ 28 (83)
|||.|. .+ -|=+.++.||+.|-
T Consensus 37 ~hp~L~-~D-----llge~v~a~h~~Gi 58 (132)
T PF14871_consen 37 RHPGLK-RD-----LLGEQVEACHERGI 58 (132)
T ss_pred CCCCCC-cC-----HHHHHHHHHHHCCC
Confidence 688886 32 25677889999873
No 11
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=42.68 E-value=16 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhhCc--hhhhccC
Q 034791 13 CAEIIEEFQKCHLDHP--IGKFFGD 35 (83)
Q Consensus 13 C~~lI~aL~eCH~~~~--~~K~~G~ 35 (83)
=.++|..|++|++++| |-|.+|.
T Consensus 44 ~~~Vl~el~~c~~~~p~~YVRlig~ 68 (84)
T cd00307 44 EAQVLAALEACLAEHPGEYVRLIGI 68 (84)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 4679999999999977 5566664
No 12
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=41.01 E-value=17 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhhhCc--hhhhccC
Q 034791 14 AEIIEEFQKCHLDHP--IGKFFGD 35 (83)
Q Consensus 14 ~~lI~aL~eCH~~~~--~~K~~G~ 35 (83)
.++|.+|++|+++++ |-+.+|.
T Consensus 59 ~~Vl~el~~c~~~~p~~yVRlig~ 82 (99)
T PF00101_consen 59 AQVLAELEACLAEHPGEYVRLIGF 82 (99)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEEE
Confidence 579999999999976 5566664
No 13
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=39.87 E-value=21 Score=24.31 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhCchhhhc
Q 034791 13 CAEIIEEFQKCHLDHPIGKFF 33 (83)
Q Consensus 13 C~~lI~aL~eCH~~~~~~K~~ 33 (83)
=.|.+..|.||..++||.+.+
T Consensus 27 T~EE~kvlrEC~~ESFwyRsl 47 (111)
T PF07051_consen 27 TEEERKVLRECNEESFWYRSL 47 (111)
T ss_pred CHHHHHHHHHHHHhhhHhccC
Confidence 357999999999999998765
No 14
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=33.51 E-value=1.8e+02 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhc
Q 034791 56 KANFEQSKKLKERLESLRKETAEAEA 81 (83)
Q Consensus 56 ~~n~~~ar~kr~r~~~~~ke~~e~~~ 81 (83)
+....++++...+.++.|+.+++..+
T Consensus 139 ke~~~~~~~~~~~r~~~W~~le~~A~ 164 (170)
T PLN00122 139 EEDEAKAKEVEEKREATWKRLEEAAA 164 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566788899999988654
No 15
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=32.46 E-value=1.5e+02 Score=19.61 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 034791 12 MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKL 65 (83)
Q Consensus 12 ~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~n~~~ar~k 65 (83)
-|-.+=..+.+|=..--..+.-..|-.+-++..-||+.-+..+|..-+.+.+++
T Consensus 32 RC~~FE~e~i~C~~~~G~~r~kKeC~~e~EDy~EClh~~Ke~~R~~aI~kqR~K 85 (96)
T PF10200_consen 32 RCHPFEKEWIECAEAYGQTRGKKECKLELEDYYECLHHTKEMKRMRAIRKQRDK 85 (96)
T ss_pred chHHHHHHHHHHHHHHcccchhhhchhHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 698888888888443224566789999999999999998888887777765554
No 16
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.26 E-value=95 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Q 034791 49 QEKAVKRKANFEQSKKLK-ERLESLRKETAEA 79 (83)
Q Consensus 49 ~ER~~r~~~n~~~ar~kr-~r~~~~~ke~~e~ 79 (83)
++|++..++.|++||+-| +.|+...||+++.
T Consensus 2 EarlaakR~araEAR~iRmreLErqqkE~ee~ 33 (302)
T PF09738_consen 2 EARLAAKRAARAEAREIRMRELERQQKEQEEN 33 (302)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 468888888999999986 5688888887764
No 17
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=29.84 E-value=34 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhhhCc--hhhhccC
Q 034791 14 AEIIEEFQKCHLDHP--IGKFFGD 35 (83)
Q Consensus 14 ~~lI~aL~eCH~~~~--~~K~~G~ 35 (83)
.++|.+|++|.++++ |-+.+|.
T Consensus 60 ~~Vl~ei~~C~~~~p~~YVRliG~ 83 (99)
T cd03527 60 AQVLREIEACRKAYPDHYVRVVGF 83 (99)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEE
Confidence 579999999999876 5566664
No 18
>smart00338 BRLZ basic region leucin zipper.
Probab=26.69 E-value=1.4e+02 Score=17.33 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034791 50 EKAVKRKANFEQSKKLKERLESLRKETAE 78 (83)
Q Consensus 50 ER~~r~~~n~~~ar~kr~r~~~~~ke~~e 78 (83)
.+..+..+|+..|+.-|.+-.+...+++.
T Consensus 5 k~~rR~~rNR~aA~~~R~rKk~~~~~Le~ 33 (65)
T smart00338 5 KRRRRRERNREAARRSRERKKAEIEELER 33 (65)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877776665555555544
No 19
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=26.03 E-value=43 Score=26.64 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCCCCCCCCchhHHHHHH
Q 034791 1 MHPPLTLHRHPMCAEIIE 18 (83)
Q Consensus 1 MHP~L~~~~h~~C~~lI~ 18 (83)
|||++.+|.|-.=|-||+
T Consensus 55 ~~phn~~HphritNffiD 72 (342)
T KOG0493|consen 55 MSPHNQTHPHRITNFFID 72 (342)
T ss_pred hCCCCCCCCchhhhhhhh
Confidence 788888888877777777
No 20
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.97 E-value=43 Score=26.58 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhCchhhhcc
Q 034791 13 CAEIIEEFQKCHLDHPIGKFFG 34 (83)
Q Consensus 13 C~~lI~aL~eCH~~~~~~K~~G 34 (83)
=-++..||+-||+.|-+.+=+-
T Consensus 138 ~~elLkALdyCHS~GImHRDVK 159 (338)
T KOG0668|consen 138 IYELLKALDYCHSMGIMHRDVK 159 (338)
T ss_pred HHHHHHHHhHHHhcCcccccCC
Confidence 4578999999999998876443
No 21
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=25.86 E-value=66 Score=20.24 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhhhhCchhhhccC---CchHHHHHHHHHHHHHHHHHHHhHHH
Q 034791 12 MCAEIIEEFQKCHLDHPIGKFFGD---CTELKIKLDRCFRQEKAVKRKANFEQ 61 (83)
Q Consensus 12 ~C~~lI~aL~eCH~~~~~~K~~G~---CN~~k~~L~~CLk~ER~~r~~~n~~~ 61 (83)
++.++.+-|.+=..+ +.+.-.. =+.++..+.+||..||.-+.++=..-
T Consensus 11 EkeeL~~klk~~qee--l~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKL 61 (69)
T PF08912_consen 11 EKEELNNKLKKQQEE--LQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKL 61 (69)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666644333 3333222 35677899999999999887664433
No 22
>PLN02150 terpene synthase/cyclase family protein
Probab=25.66 E-value=1.1e+02 Score=19.63 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=15.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHHh
Q 034791 60 EQSKKL-KERLESLRKETAEAE 80 (83)
Q Consensus 60 ~~ar~k-r~r~~~~~ke~~e~~ 80 (83)
++|++. +..++..||+|-++-
T Consensus 22 eeA~~~i~~li~~~WK~iN~e~ 43 (96)
T PLN02150 22 EEAVSELKKMIRDNYKIVMEEF 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 889999999998764
No 23
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.83 E-value=2.2e+02 Score=18.24 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034791 52 AVKRKANFEQSKKLKERLESLRKETAE 78 (83)
Q Consensus 52 ~~r~~~n~~~ar~kr~r~~~~~ke~~e 78 (83)
+.|-.+.+++++++...+.+.-|+++.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555555555443
No 24
>PHA00458 single-stranded DNA-binding protein
Probab=22.00 E-value=69 Score=24.55 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhhhhhCc
Q 034791 9 RHPMCAEIIEEFQKCHLDHP 28 (83)
Q Consensus 9 ~h~~C~~lI~aL~eCH~~~~ 28 (83)
+.|.|..+|+.|+.||.+.+
T Consensus 48 d~P~~qkmid~I~~~hee~~ 67 (233)
T PHA00458 48 DDPRCQKMIDEIVKAHEENY 67 (233)
T ss_pred CChHHHHHHHHHHHHHHHHH
Confidence 34679999999999999874
No 25
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=20.75 E-value=61 Score=19.96 Aligned_cols=16 Identities=19% Similarity=0.696 Sum_probs=10.1
Q ss_pred cCCchHHHHHHHHHHH
Q 034791 34 GDCTELKIKLDRCFRQ 49 (83)
Q Consensus 34 G~CN~~k~~L~~CLk~ 49 (83)
+.|-+++.+|..||-+
T Consensus 3 ~sC~~~~~~L~~Cl~~ 18 (68)
T PF10203_consen 3 KSCKGIREALAECLQE 18 (68)
T ss_pred chHHHHHHHHHHHHhh
Confidence 3566677777776643
No 26
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=20.41 E-value=3.1e+02 Score=21.88 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=32.3
Q ss_pred HHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH
Q 034791 19 EFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKA----NFEQSKKLKERLESLRKETAEA 79 (83)
Q Consensus 19 aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~----n~~~ar~kr~r~~~~~ke~~e~ 79 (83)
||..||...- .|+..- ++++|-..-.. -.-++.+...+|...|..+++.
T Consensus 225 Al~AC~k~~~------~c~~~p------Ir~kRd~vi~eqkr~~~~q~~~~~ekik~d~~~ldkg 277 (308)
T PF06717_consen 225 ALAACQKQSE------ECYEAP------IRAKRDAVINEQKRQYFLQSQEMSEKIKADMATLDKG 277 (308)
T ss_pred HHHHhccccc------cCccch------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677887532 354444 77777554333 3445778889999999988864
No 27
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=1.1e+02 Score=25.99 Aligned_cols=36 Identities=42% Similarity=0.521 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 034791 46 CFRQEKAVKRKANFEQSKKLKERLESLRKETAEAEA 81 (83)
Q Consensus 46 CLk~ER~~r~~~n~~~ar~kr~r~~~~~ke~~e~~~ 81 (83)
|=+.=+.+++.+|=+.|+..++.+....++|+|+++
T Consensus 298 CnKsFKseKq~kNHEnSKKHkenv~eLrqemEEEe~ 333 (508)
T KOG0717|consen 298 CNKSFKSEKQLKNHENSKKHKENVAELRQEMEEEEE 333 (508)
T ss_pred ccccccchHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556678889999999999999999999999974
No 28
>PRK10376 putative oxidoreductase; Provisional
Probab=20.07 E-value=1.6e+02 Score=21.76 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHH
Q 034791 13 CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCF 47 (83)
Q Consensus 13 C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CL 47 (83)
-.+.+++|++.-++|-+ +++|.+|.-.+.|...+
T Consensus 143 ~~~~~~~l~~l~~~Gki-r~iGvSn~~~~~l~~~~ 176 (290)
T PRK10376 143 IEEPLTVLAELQRQGLV-RHIGLSNVTPTQVAEAR 176 (290)
T ss_pred HHHHHHHHHHHHHCCce-eEEEecCCCHHHHHHHH
Confidence 55789999999999975 89999997666666654
No 29
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=20.02 E-value=39 Score=16.24 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=8.3
Q ss_pred hCchhhhccCC
Q 034791 26 DHPIGKFFGDC 36 (83)
Q Consensus 26 ~~~~~K~~G~C 36 (83)
.+||||-|..|
T Consensus 8 knffWK~~tsC 18 (18)
T PF03002_consen 8 KNFFWKTFTSC 18 (18)
T ss_pred cceeecccccC
Confidence 46788888776
Done!