BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034797
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVSSQ
VNKAKQSEESLRTVMYLSCWGPN

High Scoring Gene Products

Symbol, full name Information P value
AT4G10270 protein from Arabidopsis thaliana 3.1e-19
AT4G10265 protein from Arabidopsis thaliana 3.2e-17
AT4G33560 protein from Arabidopsis thaliana 9.0e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034797
        (83 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2122799 - symbol:AT4G10270 "AT4G10270" species...   230  3.1e-19   1
TAIR|locus:1005716386 - symbol:AT4G10265 "AT4G10265" spec...   211  3.2e-17   1
TAIR|locus:2134188 - symbol:AT4G33560 "AT4G33560" species...   103  9.0e-06   1


>TAIR|locus:2122799 [details] [associations]
            symbol:AT4G10270 "AT4G10270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009611 "response to wounding"
            evidence=ISS] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AF096373
            EMBL:AL049488 EMBL:AL161517 HOGENOM:HOG000238802 InterPro:IPR022251
            Pfam:PF12609 EMBL:AY085799 EMBL:BT025023 IPI:IPI00528638 PIR:T01970
            RefSeq:NP_192765.1 UniGene:At.48840 UniGene:At.69678 STRING:O82615
            EnsemblPlants:AT4G10270.1 GeneID:826619 KEGG:ath:AT4G10270
            TAIR:At4g10270 eggNOG:NOG308375 InParanoid:O82615 OMA:NYILRSV
            PhylomeDB:O82615 ProtClustDB:CLSN2685669 ArrayExpress:O82615
            Genevestigator:O82615 Uniprot:O82615
        Length = 90

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/90 (53%), Positives = 56/90 (62%)

Query:     1 MSSTSRAWIV----GAVEALKDQ-GFCRWNYTLKSLHQHAKNNLXXXXXXXXXXXXXXXX 55
             MSSTS+AW V    GAVEALKDQ G CRWNY L+S++QH +NN+                
Sbjct:     1 MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query:    56 XXXXX--XNKAKQSEESLRTVMYLSCWGPN 83
                      KAK++EESLRTVMYLSCWGPN
Sbjct:    61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90


>TAIR|locus:1005716386 [details] [associations]
            symbol:AT4G10265 "AT4G10265" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009611 "response to wounding"
            evidence=ISS] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.50331 HOGENOM:HOG000238802 InterPro:IPR022251
            Pfam:PF12609 EMBL:BT004669 EMBL:AK117837 IPI:IPI00533259
            RefSeq:NP_849355.1 UniGene:At.70459 EnsemblPlants:AT4G10265.1
            GeneID:826618 KEGG:ath:AT4G10265 TAIR:At4g10265 eggNOG:NOG242577
            InParanoid:Q8GY66 OMA:VIRSANQ PhylomeDB:Q8GY66
            ProtClustDB:CLSN2918053 Genevestigator:Q8GY66 Uniprot:Q8GY66
        Length = 83

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 45/88 (51%), Positives = 54/88 (61%)

Query:     1 MSSTSRAWIV----GAVEALKDQ-GFCRWNYTLKSLHQHAKNNLXXXXXXXXXXXXXXXX 55
             MSS S+ W+V    GAVEALKDQ G CRWNY ++S +Q+ +NNL                
Sbjct:     1 MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query:    56 XXXXXXNKAKQSEESLRTVMYLSCWGPN 83
                   NK KQ+EESLRTVMYLSCWGP+
Sbjct:    61 T-----NKTKQAEESLRTVMYLSCWGPS 83


>TAIR|locus:2134188 [details] [associations]
            symbol:AT4G33560 "AT4G33560" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0001666 "response to hypoxia"
            evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009944
            "polarity specification of adaxial/abaxial axis" evidence=RCA]
            [GO:0010014 "meristem initiation" evidence=RCA] [GO:0010075
            "regulation of meristem growth" evidence=RCA] [GO:0010310
            "regulation of hydrogen peroxide metabolic process" evidence=RCA]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161583 EMBL:AL031394
            EMBL:BT024757 IPI:IPI00545673 PIR:T04973 RefSeq:NP_195082.1
            UniGene:At.31574 UniGene:At.68081 EnsemblPlants:AT4G33560.1
            GeneID:829495 KEGG:ath:AT4G33560 TAIR:At4g33560 eggNOG:NOG255457
            HOGENOM:HOG000238802 OMA:HKEAMAR ProtClustDB:CLSN2915975
            Genevestigator:O81873 InterPro:IPR022251 Pfam:PF12609
            Uniprot:O81873
        Length = 95

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/84 (30%), Positives = 35/84 (41%)

Query:     2 SSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLXXXXXXXXXXXXXXXXXXXXXX 61
             +S + A  + AVE LKDQG  RWNY  + LH+ A   +                      
Sbjct:     7 ASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIR 66

Query:    62 NKAKQS---EESLRTVMYLSCWGP 82
             +K   +   E S    M LSC+GP
Sbjct:    67 SKPLSTTPFETSFEKAMGLSCFGP 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.125   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        61   0.00091  102 3  11 22  0.39    28
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  102 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.05u 0.14s 5.19t   Elapsed:  00:00:00
  Total cpu time:  5.05u 0.14s 5.19t   Elapsed:  00:00:00
  Start:  Fri May 10 01:22:05 2013   End:  Fri May 10 01:22:05 2013

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