BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034797
         (83 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q721B9|MOAA_LISMF Cyclic pyranopterin monophosphate synthase OS=Listeria
           monocytogenes serotype 4b (strain F2365) GN=moaA PE=3
           SV=1
          Length = 333

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 3   STSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTR 47
           +T+  ++    EALKD G  R N +L SLH+   +   +++R  R
Sbjct: 97  TTNAMYLAKKAEALKDAGLTRVNISLDSLHE---DRFKAITRGGR 138


>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
          Length = 1112

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/76 (22%), Positives = 37/76 (48%)

Query: 4   TSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVSSQVNK 63
           +S A   G VEA  ++  CR    L+S+ + ++ N  ++ R  R      ++++++ + +
Sbjct: 361 SSPAPSTGKVEAALNENTCRAERELRSIPEDSELNTVTLPRKARMKDQFGNSIINTPLKR 420

Query: 64  AKQSEESLRTVMYLSC 79
            K   +     + LSC
Sbjct: 421 RKVFSQEPPDALALSC 436


>sp|Q5LNP0|ATPG_RUEPO ATP synthase gamma chain OS=Ruegeria pomeroyi (strain ATCC 700808
          / DSM 15171 / DSS-3) GN=atpG PE=3 SV=1
          Length = 291

 Score = 29.3 bits (64), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 36 KNNLSSVSRSTRKLSSSSSAVVSSQVNKAKQSEESLR 72
          KN ++SV +STRK++ +   V ++++ +A++S E+ R
Sbjct: 8  KNRIASV-KSTRKITKAMQMVAAAKLRRAQESAEAAR 43


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.117    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,899,856
Number of Sequences: 539616
Number of extensions: 528020
Number of successful extensions: 2236
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2227
Number of HSP's gapped (non-prelim): 16
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)