Query 034797
Match_columns 83
No_of_seqs 103 out of 121
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00165 hypothetical protein; 100.0 2E-49 4.2E-54 262.3 5.2 82 1-83 1-88 (88)
2 PF12609 DUF3774: Wound-induce 100.0 9.6E-40 2.1E-44 211.2 4.3 72 10-82 5-79 (79)
3 KOG4195 Transient receptor pot 61.5 3.1 6.7E-05 32.6 0.4 15 69-83 98-112 (275)
4 PHA00665 major capsid protein 21.8 49 0.0011 26.8 1.2 12 72-83 169-180 (329)
5 PF06449 DUF1082: Mitochondria 21.1 52 0.0011 19.9 0.9 11 72-82 7-17 (51)
6 PF06554 Olfactory_mark: Olfac 20.9 46 0.00099 24.2 0.8 9 69-77 122-130 (151)
7 PF00751 DM: DM DNA binding do 18.1 46 0.001 19.6 0.2 15 11-25 12-27 (47)
8 PF13540 RCC1_2: Regulator of 17.9 49 0.0011 17.0 0.3 7 77-83 20-26 (30)
9 KOG1261 Malate synthase [Energ 15.2 83 0.0018 26.8 1.1 22 13-34 272-300 (552)
10 PF02083 Urotensin_II: Urotens 14.8 57 0.0012 14.5 0.0 7 21-27 5-11 (12)
No 1
>PLN00165 hypothetical protein; Provisional
Probab=100.00 E-value=2e-49 Score=262.25 Aligned_cols=82 Identities=80% Similarity=1.235 Sum_probs=73.6
Q ss_pred CCccchhHHH----HHHHhhcccccccchhhhHHHHHHHhhhcchhhhccccCCCCcchhcc--cccccccchhhhhcce
Q 034797 1 MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVS--SQVNKAKQSEESLRTV 74 (83)
Q Consensus 1 Ms~~~~~w~v----gaVealKDQG~CRWn~alrS~~~~ak~~~~s~sq~~~~ls~sssa~~s--~~~~k~kqaEESLRtV 74 (83)
||+++|+||| ||||+|||||+|||||+|||||||+++|++|++|+ ++|++++++..+ .+++|.||+||+||||
T Consensus 1 Ms~~~r~w~vAaSvgaVEalkDQG~cRwny~lrS~~~~a~~~~~s~s~~-~~lss~~~~~~s~~~~~~k~kq~EEsLRtV 79 (88)
T PLN00165 1 MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQA-KKLSSSSSAMVSSRVREEKAKQSEESLRTV 79 (88)
T ss_pred CccchhHHHHHHHHHHHhhccccCeeehhhHHHHHHHHHHhcccccccc-ccCCCcchhhhhhhhccccccchHHhhhee
Confidence 9999999998 99999999999999999999999999999999999 888766543222 2567889999999999
Q ss_pred eeeecccCC
Q 034797 75 MYLSCWGPN 83 (83)
Q Consensus 75 MyLSCWGPn 83 (83)
|||||||||
T Consensus 80 MyLSCWGPN 88 (88)
T PLN00165 80 MYLSCWGPN 88 (88)
T ss_pred eEecccCCC
Confidence 999999998
No 2
>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
Probab=100.00 E-value=9.6e-40 Score=211.16 Aligned_cols=72 Identities=71% Similarity=1.151 Sum_probs=62.8
Q ss_pred HHHHHhhccc-ccccchhhhHHHHHHHhhhc-chhhhccccCCCCcch-hcccccccccchhhhhcceeeeecccC
Q 034797 10 VGAVEALKDQ-GFCRWNYTLKSLHQHAKNNL-SSVSRSTRKLSSSSSA-VVSSQVNKAKQSEESLRTVMYLSCWGP 82 (83)
Q Consensus 10 vgaVealKDQ-G~CRWn~alrS~~~~ak~~~-~s~sq~~~~ls~sssa-~~s~~~~k~kqaEESLRtVMyLSCWGP 82 (83)
|||||+|||| |+|||||+|||+|+++++++ ++.+|+ +++++++++ .....+++.||+|||||||||||||||
T Consensus 5 vgavealKDq~g~crwn~alrs~~~~a~~~~~~s~~~~-~~~~ss~~~~~~~~~~~~~k~aEEsLRtVMyLSCWGP 79 (79)
T PF12609_consen 5 VGAVEALKDQAGLCRWNYALRSLHQHAKANVRGSASQA-KRLSSSSSSSSAAAEEEKRKQAEESLRTVMYLSCWGP 79 (79)
T ss_pred HHHHhccccccccccccHHHHHHHHHhhhccccccccc-cccCcccccccccccccccchhhhhhceeEEEeccCc
Confidence 6999999999 99999999999999999998 888888 777665442 222367899999999999999999999
No 3
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=61.51 E-value=3.1 Score=32.60 Aligned_cols=15 Identities=47% Similarity=0.776 Sum_probs=11.4
Q ss_pred hhhcceeeeecccCC
Q 034797 69 ESLRTVMYLSCWGPN 83 (83)
Q Consensus 69 ESLRtVMyLSCWGPn 83 (83)
-.|+--=-|+|||||
T Consensus 98 TGL~GRG~LgrwGPN 112 (275)
T KOG4195|consen 98 TGLRGRGSLGRWGPN 112 (275)
T ss_pred ccccccccccccCCc
Confidence 355566679999998
No 4
>PHA00665 major capsid protein
Probab=21.77 E-value=49 Score=26.75 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=10.3
Q ss_pred cceeeeecccCC
Q 034797 72 RTVMYLSCWGPN 83 (83)
Q Consensus 72 RtVMyLSCWGPn 83 (83)
-|=.||.+||||
T Consensus 169 ~tSiwlv~wg~~ 180 (329)
T PHA00665 169 NASIWLVVWGPN 180 (329)
T ss_pred cceEEEEEEcCC
Confidence 367899999997
No 5
>PF06449 DUF1082: Mitochondrial domain of unknown function (DUF1082); InterPro: IPR009455 The domain is found exclusively in plant mitochonchria and is a putative homing endonuclease, though such a function remains to be demonstrated. The domain is found C-terminal to the plant mitochondrial ATPase subunit 8 domain IPR003319 from INTERPRO.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0005739 mitochondrion, 0016021 integral to membrane
Probab=21.13 E-value=52 Score=19.94 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=9.3
Q ss_pred cceeeeecccC
Q 034797 72 RTVMYLSCWGP 82 (83)
Q Consensus 72 RtVMyLSCWGP 82 (83)
|++-++||+|-
T Consensus 7 ~kit~iscFGE 17 (51)
T PF06449_consen 7 RKITLISCFGE 17 (51)
T ss_pred eEEEEEEEece
Confidence 67899999984
No 6
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=20.92 E-value=46 Score=24.18 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=7.5
Q ss_pred hhhcceeee
Q 034797 69 ESLRTVMYL 77 (83)
Q Consensus 69 ESLRtVMyL 77 (83)
...|+|||+
T Consensus 122 AKiRKVMYF 130 (151)
T PF06554_consen 122 AKIRKVMYF 130 (151)
T ss_dssp HHCTTEEEE
T ss_pred HHHHhhhee
Confidence 468999997
No 7
>PF00751 DM: DM DNA binding domain; InterPro: IPR001275 This domain was first discovered in the doublesex proteins of Drosophila melanogaster and is also seen in proteins from Caenorhabditis elegans []. In D. melanogaster the doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides []. These proteins are believed to function as transcription factors on downstream sex-determination genes, especially on neuroblast differentiation and yolk protein genes transcription [, ]. The DM domain binds DNA as a dimer, allowing the recognition of pseudopalindromic sequences [, , ]. The NMR analysis of the DSX DM domain [] revealed a novel zinc module containing 'intertwined' CCHC and HCCC zinc-binding sites. The recognition of the DNA requires the carboxy-terminal basic tail which contacts the minor groove of the target sequence.; GO: 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007548 sex differentiation, 0005634 nucleus; PDB: 1LPV_A.
Probab=18.15 E-value=46 Score=19.55 Aligned_cols=15 Identities=27% Similarity=0.784 Sum_probs=8.6
Q ss_pred HHHHhhccc-ccccch
Q 034797 11 GAVEALKDQ-GFCRWN 25 (83)
Q Consensus 11 gaVealKDQ-G~CRWn 25 (83)
|.+..||++ ..|+|.
T Consensus 12 G~~~~lKgHk~~C~~~ 27 (47)
T PF00751_consen 12 GVIVPLKGHKRYCPFR 27 (47)
T ss_dssp T---TTTT-GGG-TTT
T ss_pred CcccchhhhccccCcC
Confidence 677889999 789997
No 8
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=17.94 E-value=49 Score=16.96 Aligned_cols=7 Identities=57% Similarity=1.678 Sum_probs=3.6
Q ss_pred eecccCC
Q 034797 77 LSCWGPN 83 (83)
Q Consensus 77 LSCWGPn 83 (83)
|-|||-|
T Consensus 20 v~~wG~n 26 (30)
T PF13540_consen 20 VYCWGDN 26 (30)
T ss_dssp EEEEE--
T ss_pred EEEEcCC
Confidence 5688764
No 9
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=15.16 E-value=83 Score=26.83 Aligned_cols=22 Identities=41% Similarity=1.177 Sum_probs=15.0
Q ss_pred HHhhccc--cc-c-cchhhh---HHHHHH
Q 034797 13 VEALKDQ--GF-C-RWNYTL---KSLHQH 34 (83)
Q Consensus 13 VealKDQ--G~-C-RWn~al---rS~~~~ 34 (83)
.-.|+|+ |+ | ||+|-+ +.+|.|
T Consensus 272 iy~lrdhsvGLNCGRWDyifS~iKt~qnh 300 (552)
T KOG1261|consen 272 IYQLRDHSVGLNCGRWDYIFSYIKTFQNH 300 (552)
T ss_pred HHHHHhhcccccccchHHHHHHHHHHhhC
Confidence 3468999 75 6 999765 455544
No 10
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=14.80 E-value=57 Score=14.50 Aligned_cols=7 Identities=43% Similarity=1.270 Sum_probs=5.0
Q ss_pred cccchhh
Q 034797 21 FCRWNYT 27 (83)
Q Consensus 21 ~CRWn~a 27 (83)
-|-|+|-
T Consensus 5 ~CFWKYC 11 (12)
T PF02083_consen 5 ECFWKYC 11 (12)
T ss_pred chhhhhc
Confidence 3889873
Done!