Query 034797
Match_columns 83
No_of_seqs 103 out of 121
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ki9_A Cannabinoid receptor 2; 24.1 5.9 0.0002 19.7 -1.8 8 75-82 14-21 (33)
2 1f35_A Olfactory marker protei 19.3 34 0.0011 24.0 0.8 10 69-78 132-141 (162)
3 1kpt_A KP4 toxin; killer toxin 16.0 48 0.0016 21.6 0.9 12 11-23 68-79 (105)
4 2l6m_A Protein dicer; DSRBD, h 11.7 66 0.0023 21.5 0.6 11 12-23 29-39 (121)
5 1lpv_A Doublesex protein; tran 10.0 39 0.0013 19.6 -0.8 15 11-25 17-32 (52)
6 1i7w_B E-cadherin, epithelial- 9.3 53 0.0018 22.5 -0.5 9 74-82 128-136 (151)
7 1q55_A EP-cadherin, C-cadherin 9.0 70 0.0024 26.7 0.0 8 75-82 857-864 (880)
8 2ljw_A ALR2454 protein; novel 8.0 54 0.0018 21.7 -0.9 15 68-82 51-66 (110)
9 2w6b_A RHO guanine nucleotide 7.1 2.1E+02 0.007 16.9 1.5 30 9-38 8-40 (56)
10 2gmf_A Granulocyte-macrophage 6.5 1.2E+02 0.0039 20.6 0.1 6 77-82 119-124 (127)
No 1
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=24.11 E-value=5.9 Score=19.72 Aligned_cols=8 Identities=50% Similarity=1.327 Sum_probs=6.5
Q ss_pred eeeecccC
Q 034797 75 MYLSCWGP 82 (83)
Q Consensus 75 MyLSCWGP 82 (83)
.|+-||.|
T Consensus 14 ~F~icW~P 21 (33)
T 2ki9_A 14 VLLICWFP 21 (33)
T ss_dssp HHTTTSSH
T ss_pred HHHHHHhH
Confidence 47889988
No 2
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=19.27 E-value=34 Score=24.01 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=7.9
Q ss_pred hhhcceeeee
Q 034797 69 ESLRTVMYLS 78 (83)
Q Consensus 69 ESLRtVMyLS 78 (83)
...|+|||+-
T Consensus 132 AkiRKVMYFl 141 (162)
T 1f35_A 132 AKIRKVMYFL 141 (162)
T ss_dssp HHHCSEEEEE
T ss_pred HHHHhheeEE
Confidence 4689999974
No 3
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=15.96 E-value=48 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=10.4
Q ss_pred HHHHhhccccccc
Q 034797 11 GAVEALKDQGFCR 23 (83)
Q Consensus 11 gaVealKDQG~CR 23 (83)
..+++|.|+| ||
T Consensus 68 ~~~~~L~~hG-Ck 79 (105)
T 1kpt_A 68 RHLTNLVNHG-CR 79 (105)
T ss_dssp HHHHHHHHHT-CS
T ss_pred HHHHHHHhcC-cc
Confidence 7899999998 65
No 4
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=11.70 E-value=66 Score=21.51 Aligned_cols=11 Identities=55% Similarity=0.987 Sum_probs=8.2
Q ss_pred HHHhhccccccc
Q 034797 12 AVEALKDQGFCR 23 (83)
Q Consensus 12 aVealKDQG~CR 23 (83)
+-+-|+||| |.
T Consensus 29 i~Q~Lq~QG-C~ 39 (121)
T 2l6m_A 29 VYQLLKDQG-CE 39 (121)
T ss_dssp HHHHHTTTT-CC
T ss_pred HHHHHHHhc-HH
Confidence 456789999 75
No 5
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=9.98 E-value=39 Score=19.59 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=12.5
Q ss_pred HHHHhhccc-ccccch
Q 034797 11 GAVEALKDQ-GFCRWN 25 (83)
Q Consensus 11 gaVealKDQ-G~CRWn 25 (83)
|.+..||++ ..|+|.
T Consensus 17 G~~~~lKGHKr~C~~r 32 (52)
T 1lpv_A 17 GLKITLKGHKRYCKFR 32 (52)
T ss_dssp TCCCTTTTCGGGCTTT
T ss_pred CCccccCCccCccCCC
Confidence 667789999 789996
No 6
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=9.34 E-value=53 Score=22.48 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=6.7
Q ss_pred eeeeecccC
Q 034797 74 VMYLSCWGP 82 (83)
Q Consensus 74 VMyLSCWGP 82 (83)
-=||+-|||
T Consensus 128 ~d~L~~wGP 136 (151)
T 1i7w_B 128 YDYLNEWGN 136 (151)
T ss_dssp -CCTTTSCG
T ss_pred chhhcccch
Confidence 348999998
No 7
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=8.97 E-value=70 Score=26.70 Aligned_cols=8 Identities=63% Similarity=1.240 Sum_probs=0.0
Q ss_pred eeeecccC
Q 034797 75 MYLSCWGP 82 (83)
Q Consensus 75 MyLSCWGP 82 (83)
=||+.|||
T Consensus 857 d~L~~~gp 864 (880)
T 1q55_A 857 NYLSDWGS 864 (880)
T ss_dssp --------
T ss_pred hhhcccch
Confidence 48999998
No 8
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=7.98 E-value=54 Score=21.72 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=9.3
Q ss_pred hhhhcce-eeeecccC
Q 034797 68 EESLRTV-MYLSCWGP 82 (83)
Q Consensus 68 EESLRtV-MyLSCWGP 82 (83)
.|.|..| =||+|||.
T Consensus 51 ~~hL~~va~~L~~wG~ 66 (110)
T 2ljw_A 51 QEHLDSVANYLHALGG 66 (110)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHccc
Confidence 3444443 47899985
No 9
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=7.15 E-value=2.1e+02 Score=16.85 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHhhccc--ccccchhhh-HHHHHHHhhh
Q 034797 9 IVGAVEALKDQ--GFCRWNYTL-KSLHQHAKNN 38 (83)
Q Consensus 9 ~vgaVealKDQ--G~CRWn~al-rS~~~~ak~~ 38 (83)
+|-+|=+|||| -++.-|.-| +++..-.+++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkAR 40 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRAR 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=6.46 E-value=1.2e+02 Score=20.58 Aligned_cols=6 Identities=50% Similarity=1.940 Sum_probs=0.0
Q ss_pred eecccC
Q 034797 77 LSCWGP 82 (83)
Q Consensus 77 LSCWGP 82 (83)
+.||+|
T Consensus 119 fdCw~p 124 (127)
T 2gmf_A 119 FDCWEP 124 (127)
T ss_dssp SSCCCC
T ss_pred ccccCc
Done!