BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034798
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD88|ASTER_ARATH Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=3 SV=1
Length = 107
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 74/84 (88%), Gaps = 3/84 (3%)
Query: 3 SHNNS---NDPRQPSAAKPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAII 59
SH N+ NDPRQPSAAKPY+ VAPEDLPVDYSGFIAVI G++GVMFRYK+CSWLAII
Sbjct: 4 SHGNASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAII 63
Query: 60 CCAQSLANMRNMETDLKQISMAMM 83
CAQSLANMRN+E DLKQISMAMM
Sbjct: 64 FCAQSLANMRNLENDLKQISMAMM 87
>sp|Q9U516|ASTER_MANSE Protein Asterix OS=Manduca sexta PE=3 SV=1
Length = 108
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 SNDPRQPSAA---KPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQ 63
++DPR+ KP ST EDL DY + ++F + G+M R K C+W A+ C +
Sbjct: 4 TSDPRRADRERRYKPPPSTTAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSI 63
Query: 64 SLANMRNMETDLKQISMAMM 83
S AN R + D KQI + M
Sbjct: 64 SFANSR-VSDDTKQIVSSFM 82
>sp|Q86H65|ASTER_DICDI Protein Asterix OS=Dictyostelium discoideum GN=DDB_G0275849 PE=3
SV=1
Length = 98
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 8 NDPRQPS--AAKPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSL 65
+DPR+ S + + + P++ ++ ++IFG G+M +YK+C W++ +CC L
Sbjct: 2 SDPRKESLIVERFEMRASTEPKEGELELYSLFSIIFGFLGIMLKYKICLWVSAVCCVAYL 61
Query: 66 ANMRNMETDLKQI 78
+N+++ ++ ++ I
Sbjct: 62 SNLKSKDSSVRTI 74
>sp|Q6ZWX0|ASTER_MOUSE Protein Asterix OS=Mus musculus GN=Wdr83os PE=2 SV=1
Length = 106
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 3 SHNNSNDPRQPSAA---KPYVSTAVAPEDLPV-DYSGFIAVIFGLAGVMFRYKLCSWLAI 58
S NN +DPR+P+ KP S D P DY + +IF + G+M + K C+W+A+
Sbjct: 2 STNNMSDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAV 61
Query: 59 ICCAQSLANMRNMETDLKQISMAMM 83
C S AN R+ E D KQ+ + M
Sbjct: 62 YCSFISFANSRSSE-DTKQMMSSFM 85
>sp|Q9Y284|ASTER_HUMAN Protein Asterix OS=Homo sapiens GN=WDR83OS PE=2 SV=1
Length = 106
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 3 SHNNSNDPRQPSAA---KPYVSTAVAPEDLPV-DYSGFIAVIFGLAGVMFRYKLCSWLAI 58
S NN +DPR+P+ KP S D P DY + +IF + G+M + K C+W+A+
Sbjct: 2 STNNMSDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAV 61
Query: 59 ICCAQSLANMRNMETDLKQISMAMM 83
C S AN R+ E D KQ+ + M
Sbjct: 62 YCSFISFANSRSSE-DTKQMMSSFM 85
>sp|Q2M2T6|ASTER_BOVIN Protein Asterix OS=Bos taurus GN=WDR83OS PE=3 SV=1
Length = 106
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 3 SHNNSNDPRQPSAA---KPYVSTAVAPEDLPV-DYSGFIAVIFGLAGVMFRYKLCSWLAI 58
S NN +DPR+P+ KP S D P DY + +IF + G+M + K C+W+A+
Sbjct: 2 SANNMSDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAV 61
Query: 59 ICCAQSLANMRNMETDLKQISMAMM 83
C S AN R+ E D KQ+ + M
Sbjct: 62 YCSFISFANSRSSE-DTKQMMSSFM 85
>sp|Q09993|ASTER_CAEEL Protein Asterix OS=Caenorhabditis elegans GN=K10B2.4 PE=3 SV=1
Length = 113
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 5 NNSNDPRQPSAA---KPYVSTA-----VAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWL 56
+ DPR+ + KP STA ++ + LP +Y + +IF + G+M R K CSWL
Sbjct: 2 QQNGDPRRTNRIVRYKPLDSTANQQQAISEDPLP-EYMNVLGMIFSMCGLMIRMKWCSWL 60
Query: 57 AIICCAQSLANMRNMETDLKQISMAMM 83
A++C S AN R + D KQI + M
Sbjct: 61 ALVCSCISFANTRTSD-DAKQIVSSFM 86
>sp|F8RT80|ASTER_CHICK Protein Asterix OS=Gallus gallus GN=WDR83OS PE=2 SV=1
Length = 101
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 9 DPRQPSAAK----PYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQS 64
DPR+P+ P + A ED DY + ++F + G+M + K C+W+A+ C S
Sbjct: 3 DPRRPARVTRYKPPTTESNPALEDPTPDYMNLLGMVFSMCGLMLKLKWCAWIAVYCSFIS 62
Query: 65 LANMRNMETDLKQISMAMM 83
AN R+ E D KQ+ + M
Sbjct: 63 FANSRSSE-DTKQMMSSFM 80
>sp|Q6Q7K0|ASTER_PIG Protein Asterix OS=Sus scrofa GN=WDR83OS PE=2 SV=1
Length = 106
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 3 SHNNSNDPRQPSAA---KPYVSTAVAPEDLPV-DYSGFIAVIFGLAGVMFRYKLCSWLAI 58
S N+ +DPR P+ KP S D P DY + +IF + G+M + K C+W+A+
Sbjct: 2 SANSMSDPRSPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAV 61
Query: 59 ICCAQSLANMRNMETDLKQISMAMM 83
C S AN R+ E D KQ+ + M
Sbjct: 62 YCSFISFANSRSSE-DTKQMMSSFM 85
>sp|Q9VRJ8|ASTER_DROME Protein Asterix OS=Drosophila melanogaster GN=CG10674 PE=1 SV=1
Length = 108
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 5 NNSNDPRQPSAAKPYVS------TAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAI 58
N + DPR+ Y + + A ED+ DY + +IF + G+M + K C+W A+
Sbjct: 2 NMTVDPRRKEKINRYKAPKNQGQSGGANEDMMPDYMNILGMIFSMCGLMMKLKWCAWFAL 61
Query: 59 ICCAQSLANMRNMETDLKQI 78
C S A+ R + D KQ+
Sbjct: 62 YCSCISFASSRASD-DAKQV 80
>sp|Q9JJQ0|PIGB_MOUSE GPI mannosyltransferase 3 OS=Mus musculus GN=Pigb PE=1 SV=2
Length = 542
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 43 LAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISM 80
+A +F +LCSW CC ++L N MET L +++
Sbjct: 159 VAQWVFLCQLCSWFTWYCCTRTLTN--TMETSLTALAL 194
>sp|Q92521|PIGB_HUMAN GPI mannosyltransferase 3 OS=Homo sapiens GN=PIGB PE=2 SV=1
Length = 554
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 47 MFRYKLCSWLAIICCAQSLANMRNMETDLKQISM 80
+F +LCSW CC ++L N MET L I++
Sbjct: 174 VFFCQLCSWFTWYCCTRTLTN--TMETVLTIIAL 205
>sp|A0PY95|ALR_CLONN Alanine racemase OS=Clostridium novyi (strain NT) GN=alr PE=3 SV=1
Length = 387
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 29 LPVDYS-GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLK 76
LPV Y+ G+ ++FG A V+ +L + IC Q + ++ +++ D+K
Sbjct: 282 LPVGYADGYTRLLFGKAKVIINGQLAPVVGRICMDQCMVDITDIKGDIK 330
>sp|Q1LZA0|PIGB_BOVIN GPI mannosyltransferase 3 OS=Bos taurus GN=PIGB PE=2 SV=1
Length = 541
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 47 MFRYKLCSWLAIICCAQSLANMRNMETDLKQISM 80
+F +LCSW CC ++L N MET L I++
Sbjct: 164 VFFCQLCSWFTWYCCTRTLTN--TMETVLTIIAL 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,975,337
Number of Sequences: 539616
Number of extensions: 851436
Number of successful extensions: 2684
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2671
Number of HSP's gapped (non-prelim): 16
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)