Query 034798
Match_columns 83
No_of_seqs 96 out of 106
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3462 Predicted membrane pro 100.0 1.7E-41 3.7E-46 224.4 8.3 77 6-83 3-84 (105)
2 PF03669 UPF0139: Uncharacteri 100.0 6E-40 1.3E-44 218.2 7.8 77 6-83 3-83 (103)
3 PF14235 DUF4337: Domain of un 84.0 2.7 6E-05 29.6 4.7 32 35-66 120-151 (157)
4 PF05251 UPF0197: Uncharacteri 67.8 29 0.00063 22.1 5.7 29 14-48 2-30 (77)
5 PF06363 Picorna_P3A: Picornav 49.2 22 0.00048 23.7 2.8 27 38-66 56-82 (100)
6 COG3308 Predicted membrane pro 45.9 83 0.0018 22.0 5.4 34 32-65 72-110 (131)
7 PRK10381 LPS O-antigen length 45.5 1.3E+02 0.0028 23.8 7.1 30 30-66 26-56 (377)
8 PRK09459 pspG phage shock prot 42.7 69 0.0015 20.5 4.2 28 37-66 34-61 (76)
9 PF09583 Phageshock_PspG: Phag 38.7 92 0.002 19.4 4.2 26 36-63 33-58 (65)
10 TIGR02595 PEP_exosort PEP-CTER 37.3 46 0.001 16.6 2.4 20 32-51 3-22 (26)
11 PF04973 NMN_transporter: Nico 37.2 1.2E+02 0.0026 21.0 5.2 29 33-61 2-32 (181)
12 PHA00724 hypothetical protein 36.2 1.1E+02 0.0023 19.7 4.4 36 31-66 6-41 (83)
13 PF13273 DUF4064: Protein of u 36.0 81 0.0018 19.7 3.9 30 36-65 66-98 (100)
14 TIGR02975 phageshock_pspG phag 36.0 1.1E+02 0.0023 19.0 4.2 25 37-63 33-57 (64)
15 PF11342 DUF3144: Protein of u 32.3 23 0.00051 22.5 0.9 23 61-83 8-30 (78)
16 PF06687 SUR7: SUR7/PalI famil 32.2 1.1E+02 0.0024 21.0 4.4 15 52-66 148-162 (212)
17 PF01146 Caveolin: Caveolin; 28.9 1.3E+02 0.0028 21.2 4.2 27 35-68 72-98 (148)
18 TIGR01528 NMN_trans_PnuC nicot 28.3 1.6E+02 0.0035 20.8 4.7 31 32-62 2-34 (189)
19 PF14340 DUF4395: Domain of un 27.6 2E+02 0.0042 19.4 6.2 42 26-67 68-113 (131)
20 PRK12361 hypothetical protein; 27.5 1.4E+02 0.0031 24.2 4.8 34 33-66 10-47 (547)
21 PRK15397 nicotinamide riboside 27.4 1.6E+02 0.0035 21.9 4.8 32 32-63 23-56 (239)
22 PRK14762 membrane protein; Pro 26.9 57 0.0012 16.9 1.6 17 50-66 1-17 (27)
23 PRK05771 V-type ATP synthase s 26.5 2.9E+02 0.0062 23.1 6.5 26 19-44 336-361 (646)
24 PRK10414 biopolymer transport 25.8 67 0.0014 24.1 2.5 16 51-66 24-39 (244)
25 PHA02831 EEV host range protei 25.6 53 0.0012 25.1 2.0 58 9-66 202-259 (268)
26 PF12359 DUF3645: Protein of u 25.5 37 0.00081 18.6 0.8 16 9-24 2-17 (34)
27 PF06168 DUF981: Protein of un 24.8 2.3E+02 0.005 20.7 5.1 38 29-66 72-113 (191)
28 PF13828 DUF4190: Domain of un 24.3 1.7E+02 0.0036 17.5 4.5 37 35-72 2-38 (62)
29 PF06946 Phage_holin_5: Phage 24.2 1.7E+02 0.0036 19.3 3.9 9 54-62 64-72 (93)
30 PF09435 DUF2015: Fungal prote 23.0 1.2E+02 0.0026 21.1 3.2 36 35-70 9-48 (128)
31 PTZ00373 60S Acidic ribosomal 21.4 85 0.0018 21.2 2.1 31 48-81 1-31 (112)
32 PF10726 DUF2518: Protein of f 21.2 99 0.0021 22.0 2.5 18 49-66 10-27 (145)
33 PF01679 Pmp3: Proteolipid mem 20.8 1.5E+02 0.0034 17.1 2.9 32 35-66 6-39 (51)
34 PF10960 DUF2762: Protein of u 20.5 92 0.002 19.3 2.0 18 53-70 13-30 (71)
35 PF09624 DUF2393: Protein of u 20.4 2.2E+02 0.0048 18.9 4.0 22 37-59 2-23 (149)
36 PF10112 Halogen_Hydrol: 5-bro 20.4 3.1E+02 0.0068 19.1 5.2 25 42-66 21-45 (199)
37 PF03176 MMPL: MMPL family; I 20.3 2E+02 0.0044 21.2 4.2 31 36-66 152-182 (333)
No 1
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.7e-41 Score=224.44 Aligned_cols=77 Identities=52% Similarity=0.917 Sum_probs=73.5
Q ss_pred CCCCCCCCCCccccccCCCCC-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHh
Q 034798 6 NSNDPRQPSAAKPYVSTAVAP-----EDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISM 80 (83)
Q Consensus 6 ~~~DPRRp~~v~py~~p~~~~-----dd~~~D~~~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~N~r~~e~D~kQi~s 80 (83)
+.+|||||++|+||+||+..+ ||+++||+|+|||||+|||+|+|+|||+|+|++|||+||||+|+.| |+|||+|
T Consensus 3 ~~~DPRrp~~i~rYkp~p~~~~~~~~eD~~pdYmn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~se-D~KQi~s 81 (105)
T KOG3462|consen 3 SVNDPRRPNKIKRYKPPPSAPQGAANEDPPPDYMNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSE-DAKQISS 81 (105)
T ss_pred CCCCCCCcccccCCCCCCCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHH
Confidence 447999999999999998876 9999999999999999999999999999999999999999999976 9999999
Q ss_pred hcC
Q 034798 81 AMM 83 (83)
Q Consensus 81 s~m 83 (83)
|||
T Consensus 82 sfM 84 (105)
T KOG3462|consen 82 SFM 84 (105)
T ss_pred HHH
Confidence 997
No 2
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=100.00 E-value=6e-40 Score=218.17 Aligned_cols=77 Identities=45% Similarity=0.850 Sum_probs=73.2
Q ss_pred CCCCCCCCCCccccccCCCCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHhh
Q 034798 6 NSNDPRQPSAAKPYVSTAVAP----EDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISMA 81 (83)
Q Consensus 6 ~~~DPRRp~~v~py~~p~~~~----dd~~~D~~~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~N~r~~e~D~kQi~ss 81 (83)
+++|||||++|+||++|+.++ ||+++||+|+||++|+|||+|||+|||+|+|++||++||+|+|+ |+|+|||+|+
T Consensus 3 ~~~DPRRp~~i~~y~~p~~~~~~~~ed~~~Dy~~~L~~~~~m~gl~mr~K~~aW~al~~s~~S~an~k~-~~d~kq~~ss 81 (103)
T PF03669_consen 3 SSSDPRRPDLIVPYKPPPASPNQPQEDPPPDYMSFLGMIFSMAGLMMRNKWCAWAALFFSCQSFANMKS-SNDTKQISSS 81 (103)
T ss_pred CCCCCCCccccccCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-cccchHHHHH
Confidence 458999999999999999766 88899999999999999999999999999999999999999998 8899999999
Q ss_pred cC
Q 034798 82 MM 83 (83)
Q Consensus 82 ~m 83 (83)
||
T Consensus 82 ~m 83 (103)
T PF03669_consen 82 FM 83 (103)
T ss_pred HH
Confidence 85
No 3
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=84.00 E-value=2.7 Score=29.58 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 35 GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 35 ~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
--++.+|+=..+++|.||+.|+++.++..+++
T Consensus 120 lQIaI~Lasit~Lt~~~~l~~~~~~~g~~G~~ 151 (157)
T PF14235_consen 120 LQIAIVLASITALTKKKWLWYASLGLGAVGVA 151 (157)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999999988764
No 4
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=67.78 E-value=29 Score=22.14 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCccccccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 034798 14 SAAKPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMF 48 (83)
Q Consensus 14 ~~v~py~~p~~~~dd~~~D~~~~l~~~~~m~gl~m 48 (83)
|...||..|- +|..+..+++++-..|+++
T Consensus 2 ~~m~~Y~sPV------~p~~~p~La~vll~iGl~f 30 (77)
T PF05251_consen 2 ESMSRYTSPV------NPALYPHLAVVLLAIGLFF 30 (77)
T ss_pred CcccCcCCCC------CHHHHHHHHHHHHHHHHHH
Confidence 4567898875 4678999999999999987
No 5
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=49.21 E-value=22 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 38 AVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 38 ~~~~~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
.=+-.|.-..+||| ||.-++-++.|++
T Consensus 56 ~k~k~~~~FV~RNk--~W~T~~S~~tS~i 82 (100)
T PF06363_consen 56 NKMKSMLSFVERNK--AWFTVVSAVTSFI 82 (100)
T ss_pred HHHHHHHHHHHHcc--hHhhHHHHHHHHH
Confidence 44557788899999 5666665555554
No 6
>COG3308 Predicted membrane protein [Function unknown]
Probab=45.91 E-value=83 Score=21.99 Aligned_cols=34 Identities=9% Similarity=0.337 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Q 034798 32 DYSGFIAVIFGLAGVMF-----RYKLCSWLAIICCAQSL 65 (83)
Q Consensus 32 D~~~~l~~~~~m~gl~m-----R~K~~aW~al~~s~~s~ 65 (83)
-|.+++-+++=.-|++- --|+|+|+.++++++-|
T Consensus 72 awA~~vvlLyF~~av~~lfdd~aer~lawaevllS~~~F 110 (131)
T COG3308 72 AWASMVVLLYFAEAVMRLFDDPAERILAWAEVLLSIIFF 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 34555555544445543 56899998776655544
No 7
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=45.46 E-value=1.3e+02 Score=23.79 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 034798 30 PVDYSGFIAVIFGLAGVMFRYKL-CSWLAIICCAQSLA 66 (83)
Q Consensus 30 ~~D~~~~l~~~~~m~gl~mR~K~-~aW~al~~s~~s~~ 66 (83)
..|...+ +.++.|.|| +..++++|++.+++
T Consensus 26 eidl~~l-------l~~L~r~k~~Il~~~~~~~~~g~~ 56 (377)
T PRK10381 26 EIDLFEL-------ISVLWKAKKTIIAITFAFACAGLL 56 (377)
T ss_pred ccCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566553 455566654 44555555555443
No 8
>PRK09459 pspG phage shock protein G; Reviewed
Probab=42.73 E-value=69 Score=20.49 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 37 IAVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 37 l~~~~~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
+-++.||.|++. |.+-|..+.....=+-
T Consensus 34 vM~l~Gm~~lvi--KLLPWLil~~v~vW~~ 61 (76)
T PRK09459 34 VMFLGGMFALMI--KLLPWLLLAVVVVWVI 61 (76)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 345667788887 8899988776655443
No 9
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=38.65 E-value=92 Score=19.36 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034798 36 FIAVIFGLAGVMFRYKLCSWLAIICCAQ 63 (83)
Q Consensus 36 ~l~~~~~m~gl~mR~K~~aW~al~~s~~ 63 (83)
.+..+.||.|++. |.+-|..+.....
T Consensus 33 ~vm~l~Gm~~lvi--KLLPWLil~~~~v 58 (65)
T PF09583_consen 33 AVMFLGGMFGLVI--KLLPWLILAAVVV 58 (65)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3455677888887 8899988766543
No 10
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=37.32 E-value=46 Score=16.65 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 034798 32 DYSGFIAVIFGLAGVMFRYK 51 (83)
Q Consensus 32 D~~~~l~~~~~m~gl~mR~K 51 (83)
|-..++++.++..++..|.|
T Consensus 3 EPstl~ll~~g~~~~~~rrr 22 (26)
T TIGR02595 3 EPSTLLLLLLGLGFLLLRRR 22 (26)
T ss_pred CchHHHHHHHHHHHHHHhhc
Confidence 44566666666655555443
No 11
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=37.19 E-value=1.2e+02 Score=21.03 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 034798 33 YSGFIAVIFGLAGVMF--RYKLCSWLAIICC 61 (83)
Q Consensus 33 ~~~~l~~~~~m~gl~m--R~K~~aW~al~~s 61 (83)
+..+++.++|++.+.+ |.|...|..-+++
T Consensus 2 ~~~~~~~i~g~l~v~l~~k~~~~~~~~giis 32 (181)
T PF04973_consen 2 WLELIASILGLLCVILAAKGNIWNWPFGIIS 32 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3467788888887766 6666666544443
No 12
>PHA00724 hypothetical protein
Probab=36.20 E-value=1.1e+02 Score=19.67 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 31 VDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 31 ~D~~~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
.|..-++|..++.+|+.-||-..--.+.+.....|+
T Consensus 6 gdviyilgil~p~lgli~rnyl~nlmgfvmgtigfl 41 (83)
T PHA00724 6 GDVIYILGILIPLLGLIVRNYLVNLMGFVMGTIGFL 41 (83)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhee
Confidence 577788999999999999998877777666665554
No 13
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=36.00 E-value=81 Score=19.70 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 034798 36 FIAVIFGLAGVMF---RYKLCSWLAIICCAQSL 65 (83)
Q Consensus 36 ~l~~~~~m~gl~m---R~K~~aW~al~~s~~s~ 65 (83)
+++.+++..|.++ |.|..+|.-++.++.++
T Consensus 66 ii~~il~iia~i~ikk~~k~~Gil~Ii~aii~~ 98 (100)
T PF13273_consen 66 IISSILGIIASILIKKNPKLAGILFIIAAIISL 98 (100)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhhhhHHHHHHH
Confidence 3444445555444 24566666666655543
No 14
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=35.99 E-value=1.1e+02 Score=19.00 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034798 37 IAVIFGLAGVMFRYKLCSWLAIICCAQ 63 (83)
Q Consensus 37 l~~~~~m~gl~mR~K~~aW~al~~s~~ 63 (83)
+-++.||.|++. |.+-|..+.....
T Consensus 33 vm~l~Gm~~lvi--KLLPWLil~~v~v 57 (64)
T TIGR02975 33 FMALGGMFALMI--KLLPWLILAVVVV 57 (64)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 345567778777 8899988766544
No 15
>PF11342 DUF3144: Protein of unknown function (DUF3144); InterPro: IPR021490 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.32 E-value=23 Score=22.46 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=19.3
Q ss_pred HHHHhhhhcccchhhHHHHhhcC
Q 034798 61 CAQSLANMRNMETDLKQISMAMM 83 (83)
Q Consensus 61 s~~s~~N~r~~e~D~kQi~ss~m 83 (83)
.++.++|....+.|.-|+..|+|
T Consensus 8 ~fI~lAN~~~~~~~~g~Vsaall 30 (78)
T PF11342_consen 8 EFIALANEQNKEEDAGQVSAALL 30 (78)
T ss_pred HHHHHHHHhhccCCcchHHHHHH
Confidence 57889999888889999888875
No 16
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=32.21 E-value=1.1e+02 Score=21.01 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhh
Q 034798 52 LCSWLAIICCAQSLA 66 (83)
Q Consensus 52 ~~aW~al~~s~~s~~ 66 (83)
+..|.+.++++.++.
T Consensus 148 ~~~~~~~~~s~~a~~ 162 (212)
T PF06687_consen 148 ILSLVASILSLLAFI 162 (212)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766653
No 17
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=28.92 E-value=1.3e+02 Score=21.20 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 034798 35 GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANM 68 (83)
Q Consensus 35 ~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~N~ 68 (83)
.+|+.++|.-.. -..+++|++.|+.|-
T Consensus 72 r~Ls~ilaiP~A-------~~~Gi~FA~lsf~hI 98 (148)
T PF01146_consen 72 RILSLILAIPLA-------FLWGILFACLSFLHI 98 (148)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 555555554333 236777777777753
No 18
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=28.31 E-value=1.6e+02 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 034798 32 DYSGFIAVIFGLAGVMF--RYKLCSWLAIICCA 62 (83)
Q Consensus 32 D~~~~l~~~~~m~gl~m--R~K~~aW~al~~s~ 62 (83)
++..++|.++|.+.+.+ |.|...|+.-+.++
T Consensus 2 s~le~~a~i~g~~~v~l~~k~~~~~w~~Giis~ 34 (189)
T TIGR01528 2 SIIELIAGLMGILCVVLASEGKVSNYIFGLISA 34 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45677888888888777 77777776544443
No 19
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=27.64 E-value=2e+02 Score=19.38 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=26.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHhhh
Q 034798 26 PEDLPVDYSGFIAVIFGLAGVMF---RYKLCSWL-AIICCAQSLAN 67 (83)
Q Consensus 26 ~dd~~~D~~~~l~~~~~m~gl~m---R~K~~aW~-al~~s~~s~~N 67 (83)
+|..+.-+.+.+|.+|...++.. .....+|+ +.++.+..++|
T Consensus 68 e~~~pkRFAq~iG~~f~~~~~~~~~~g~~~~~~i~~~~~~~aA~le 113 (131)
T PF14340_consen 68 EDAAPKRFAQGIGLVFLGVALVAFLLGWPVAGYILAAILLVAAFLE 113 (131)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 44446788899999988877665 45566665 33334444443
No 20
>PRK12361 hypothetical protein; Provisional
Probab=27.48 E-value=1.4e+02 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 034798 33 YSGFIAVIFGLAGVMFR----YKLCSWLAIICCAQSLA 66 (83)
Q Consensus 33 ~~~~l~~~~~m~gl~mR----~K~~aW~al~~s~~s~~ 66 (83)
||.+-+.++..+++..- .=|+.|+|+.+.+.+++
T Consensus 10 ~y~~ga~~~~~~~~~~~~~~~~~~~~w~~~~~~~v~~~ 47 (547)
T PRK12361 10 YYLAGALLLLYLAVTGPSILLTFLFAWISLSLFLVGSA 47 (547)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444322 23788999988877765
No 21
>PRK15397 nicotinamide riboside transporter PnuC; Provisional
Probab=27.39 E-value=1.6e+02 Score=21.91 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 034798 32 DYSGFIAVIFGLAGVMF--RYKLCSWLAIICCAQ 63 (83)
Q Consensus 32 D~~~~l~~~~~m~gl~m--R~K~~aW~al~~s~~ 63 (83)
++..++|.++|.+.+.+ |.|...|+.-+.++.
T Consensus 23 s~lel~a~i~Gll~V~L~~k~~v~~w~~Giis~~ 56 (239)
T PRK15397 23 SWIEAVGTIAGLLCIWLASLEKIINYLFGLINVT 56 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55688999999998888 777777876554443
No 22
>PRK14762 membrane protein; Provisional
Probab=26.93 E-value=57 Score=16.93 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034798 50 YKLCSWLAIICCAQSLA 66 (83)
Q Consensus 50 ~K~~aW~al~~s~~s~~ 66 (83)
+|++.|+.++.-+..++
T Consensus 1 mki~lw~i~iifligll 17 (27)
T PRK14762 1 MKIILWAVLIIFLIGLL 17 (27)
T ss_pred CeeHHHHHHHHHHHHHH
Confidence 37788988887777665
No 23
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.52 E-value=2.9e+02 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=15.0
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHH
Q 034798 19 YVSTAVAPEDLPVDYSGFIAVIFGLA 44 (83)
Q Consensus 19 y~~p~~~~dd~~~D~~~~l~~~~~m~ 44 (83)
|-.|..++=|+++=..-++..+|||+
T Consensus 336 Yg~P~Y~EiDPT~~~ai~f~lfFGmM 361 (646)
T PRK05771 336 YSLPKYNEIDPTPFLAIFFPLFFGMM 361 (646)
T ss_pred cCCCCCCCcCCccHHHHHHHHHHHHH
Confidence 33466666666665555555555554
No 24
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=25.82 E-value=67 Score=24.06 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 034798 51 KLCSWLAIICCAQSLA 66 (83)
Q Consensus 51 K~~aW~al~~s~~s~~ 66 (83)
|++-|+-++||+.+|+
T Consensus 24 k~Vm~~Ll~~Si~swa 39 (244)
T PRK10414 24 KCVMIGLILASVVTWA 39 (244)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788999999988884
No 25
>PHA02831 EEV host range protein; Provisional
Probab=25.61 E-value=53 Score=25.12 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCCCCCCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 9 DPRQPSAAKPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 9 DPRRp~~v~py~~p~~~~dd~~~D~~~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
||=||.-+.-+---.-+++|...|..+-+-+++-++++..=.=.++=++|+|+|.+-.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T PHA02831 202 NEIQPNYLFDDLDEDFNNSTTNYNMQQNIITIIILLSIICFIFVLGLIALFLSCNKST 259 (268)
T ss_pred CCCCccceecccccccCCcccccccccceEeehhHHHHHHHHHHHHHHHHhhcccccc
Confidence 4455555422221122344545666663333333444443334667788899985433
No 26
>PF12359 DUF3645: Protein of unknown function (DUF3645) ; InterPro: IPR022105 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a conserved HPD sequence motif.
Probab=25.45 E-value=37 Score=18.59 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.3
Q ss_pred CCCCCCCccccccCCC
Q 034798 9 DPRQPSAAKPYVSTAV 24 (83)
Q Consensus 9 DPRRp~~v~py~~p~~ 24 (83)
|++|--+++||.....
T Consensus 2 ~~~R~~lAVPf~akd~ 17 (34)
T PF12359_consen 2 DPSRTRLAVPFRAKDV 17 (34)
T ss_pred CcCCceeeeeeecCCC
Confidence 7888899999998654
No 27
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=24.85 E-value=2.3e+02 Score=20.75 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=30.9
Q ss_pred CCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q 034798 29 LPVDYSGFIAVIFGLAGVMF----RYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 29 ~~~D~~~~l~~~~~m~gl~m----R~K~~aW~al~~s~~s~~ 66 (83)
.=.|-+-++|.++-++|+.. +.|..+|.+++.++.-+.
T Consensus 72 lFgd~~~lfGv~lL~~~~~l~~~~~L~~~~~~~~flGl~~iv 113 (191)
T PF06168_consen 72 LFGDPWLLFGVLLLSAGLALYRGWDLRPLGIFALFLGLILIV 113 (191)
T ss_pred hHhhhHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34678889999999999988 678999999988876543
No 28
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=24.35 E-value=1.7e+02 Score=17.50 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 034798 35 GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNME 72 (83)
Q Consensus 35 ~~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~N~r~~e 72 (83)
...+++++.+|++.= -+++=++++|...+.-..|.++
T Consensus 2 Aiaslvlgi~~~~~~-~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 2 AIASLVLGILGLFLC-GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred cHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhccC
Confidence 356788888888883 4566678888888887665433
No 29
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.17 E-value=1.7e+02 Score=19.33 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 034798 54 SWLAIICCA 62 (83)
Q Consensus 54 aW~al~~s~ 62 (83)
+|+..+..+
T Consensus 64 ~~aG~laGl 72 (93)
T PF06946_consen 64 AWAGGLAGL 72 (93)
T ss_pred HHHHHHhhh
Confidence 465555544
No 30
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=23.01 E-value=1.2e+02 Score=21.06 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhcc
Q 034798 35 GFIAVIFGLAGVMFRYKLCSWLAIICC----AQSLANMRN 70 (83)
Q Consensus 35 ~~l~~~~~m~gl~mR~K~~aW~al~~s----~~s~~N~r~ 70 (83)
.++-++++.+..++|.||+.-..=.+. +.++...|.
T Consensus 9 ~~~~~i~~t~lf~~R~r~~~~~~~~~~~~~~~~~~~y~~l 48 (128)
T PF09435_consen 9 TFFVLIIGTLLFFTRHRWLPLLPRYRSRLLRIRSYFYSRL 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhhccccccccccC
Confidence 455677777888889999976443333 444444443
No 31
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=21.37 E-value=85 Score=21.16 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhhHHHHhh
Q 034798 48 FRYKLCSWLAIICCAQSLANMRNMETDLKQISMA 81 (83)
Q Consensus 48 mR~K~~aW~al~~s~~s~~N~r~~e~D~kQi~ss 81 (83)
|++||+ +.|+-+.-=-|...+.+|.|+|+.+
T Consensus 1 ~~Mkyv---aAYlL~~lgG~~~pTaddI~kIL~A 31 (112)
T PTZ00373 1 MAMKYV---AAYLMCVLGGNENPTKKEVKNVLSA 31 (112)
T ss_pred CchHHH---HHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345655 3333333334554567799999876
No 32
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=21.20 E-value=99 Score=21.97 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034798 49 RYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 49 R~K~~aW~al~~s~~s~~ 66 (83)
--+|++|+.++|++..++
T Consensus 10 ~~~W~~~~ti~~~~lTil 27 (145)
T PF10726_consen 10 YTQWLGIATIALAVLTIL 27 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347999988888776543
No 33
>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=20.83 E-value=1.5e+02 Score=17.11 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Q 034798 35 GFIAVIFGLAGVMFRYKL--CSWLAIICCAQSLA 66 (83)
Q Consensus 35 ~~l~~~~~m~gl~mR~K~--~aW~al~~s~~s~~ 66 (83)
-+++.+++-+|+++|... --|+.+++.+..|.
T Consensus 6 ~ilai~lPPlaV~~~~g~~~~~~inl~Ltl~g~i 39 (51)
T PF01679_consen 6 IILAIFLPPLAVFLKKGCSKDFWINLLLTLLGWI 39 (51)
T ss_pred HHHHHHcccHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 468889999999997651 13777777776664
No 34
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.47 E-value=92 Score=19.32 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 034798 53 CSWLAIICCAQSLANMRN 70 (83)
Q Consensus 53 ~aW~al~~s~~s~~N~r~ 70 (83)
-+|++||+.+.-+.--++
T Consensus 13 G~fA~LFv~Ll~yvlK~~ 30 (71)
T PF10960_consen 13 GIFAVLFVWLLFYVLKEN 30 (71)
T ss_pred CcHHHHHHHHHHHHHHHh
Confidence 368888777776664443
No 35
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=20.41 E-value=2.2e+02 Score=18.91 Aligned_cols=22 Identities=27% Similarity=0.470 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034798 37 IAVIFGLAGVMFRYKLCSWLAII 59 (83)
Q Consensus 37 l~~~~~m~gl~mR~K~~aW~al~ 59 (83)
+.+++-.+|+..|.|+ .|..++
T Consensus 2 ~~~~~~~l~i~~~~k~-~~~~~~ 23 (149)
T PF09624_consen 2 LFLLFFFLGIKLRKKI-LALSFI 23 (149)
T ss_pred hhHHHHHHHHHHhhHH-HHHHHH
Confidence 4567778899999994 454433
No 36
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.36 E-value=3.1e+02 Score=19.13 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 42 GLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 42 ~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
.....++....-.|+++++++..+.
T Consensus 21 ~~~~~~~~~~~~~~l~~l~~~~~~~ 45 (199)
T PF10112_consen 21 TFLVSFFGFDHSFLLSLLIGAVAFA 45 (199)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444566677778777775554
No 37
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.32 E-value=2e+02 Score=21.20 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034798 36 FIAVIFGLAGVMFRYKLCSWLAIICCAQSLA 66 (83)
Q Consensus 36 ~l~~~~~m~gl~mR~K~~aW~al~~s~~s~~ 66 (83)
.+..++-++.+++|.-..+++.+++.+.++.
T Consensus 152 ~l~~i~lvl~~~fRs~~~~l~~l~~~~~~~~ 182 (333)
T PF03176_consen 152 ALLLIFLVLLLVFRSVRAALLPLLPVLLSIV 182 (333)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778888988888888877776543
Done!