Query 034798
Match_columns 83
No_of_seqs 96 out of 106
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tdg_A DSBG, putative uncharac 17.3 41 0.0014 24.6 0.9 17 64-80 24-40 (273)
2 2zt9_E Cytochrome B6-F complex 16.7 1.3E+02 0.0043 15.4 3.1 18 31-48 5-23 (31)
3 3ha4_A MIX1; TPR-like, helix-t 16.1 33 0.0011 23.2 0.1 7 8-14 27-33 (154)
4 2jrw_A Cyclic extended PEP.1; 15.5 59 0.002 15.8 1.0 10 15-24 13-22 (26)
5 2fly_A Proadrenomedullin N-20 14.5 82 0.0028 15.5 1.3 9 48-56 9-17 (26)
6 3k2j_A Protein polybromo-1; PB 14.2 97 0.0033 19.6 2.0 28 9-38 34-61 (130)
7 2lbf_A 60S acidic ribosomal pr 12.3 2E+02 0.0068 16.7 2.9 27 52-81 8-34 (69)
8 3ljw_A Protein polybromo-1; al 12.0 1.1E+02 0.0038 18.8 1.8 28 9-38 25-52 (120)
9 3a1y_A 50S ribosomal protein P 11.9 1.6E+02 0.0056 16.4 2.4 26 53-81 3-28 (58)
10 3ag7_A Putative uncharacterize 11.8 1.2E+02 0.004 18.7 1.8 19 62-82 15-33 (106)
No 1
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=17.31 E-value=41 Score=24.60 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=7.3
Q ss_pred HhhhhcccchhhHHHHh
Q 034798 64 SLANMRNMETDLKQISM 80 (83)
Q Consensus 64 s~~N~r~~e~D~kQi~s 80 (83)
++||.+..|..+||.+.
T Consensus 24 ~~a~~~~~~~~l~~~l~ 40 (273)
T 3tdg_A 24 VSANDKRMQDNLVSVIE 40 (273)
T ss_dssp --------CHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHH
Confidence 46788888889988774
No 2
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=16.71 E-value=1.3e+02 Score=15.36 Aligned_cols=18 Identities=50% Similarity=1.082 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHH-HHHH
Q 034798 31 VDYSGFIAVIFGLA-GVMF 48 (83)
Q Consensus 31 ~D~~~~l~~~~~m~-gl~m 48 (83)
.||..+++..++++ |+++
T Consensus 5 i~y~~~l~~~~~iA~GL~f 23 (31)
T 2zt9_E 5 VAYIGFLALFTGIAAGLLF 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 47788888888775 4444
No 3
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=16.09 E-value=33 Score=23.18 Aligned_cols=7 Identities=71% Similarity=1.441 Sum_probs=5.7
Q ss_pred CCCCCCC
Q 034798 8 NDPRQPS 14 (83)
Q Consensus 8 ~DPRRp~ 14 (83)
+|||||-
T Consensus 27 ndprrpp 33 (154)
T 3ha4_A 27 NDPRRPP 33 (154)
T ss_dssp HCTTCCC
T ss_pred CCCCCCC
Confidence 6999984
No 4
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=15.48 E-value=59 Score=15.85 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=7.4
Q ss_pred CccccccCCC
Q 034798 15 AAKPYVSTAV 24 (83)
Q Consensus 15 ~v~py~~p~~ 24 (83)
..+||.+|+.
T Consensus 13 serpyhpppp 22 (26)
T 2jrw_A 13 SERPYHPPPP 22 (26)
T ss_dssp CSSSCCSCSC
T ss_pred ccCCCCCCCC
Confidence 4579998874
No 5
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=14.49 E-value=82 Score=15.55 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=7.3
Q ss_pred HHHHHHHHH
Q 034798 48 FRYKLCSWL 56 (83)
Q Consensus 48 mR~K~~aW~ 56 (83)
+|.||-+|+
T Consensus 9 frKKwn~w~ 17 (26)
T 2fly_A 9 FRKKWNKWA 17 (26)
T ss_pred HHHHHHHHH
Confidence 588998886
No 6
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=14.15 E-value=97 Score=19.65 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=17.5
Q ss_pred CCCCCCCccccccCCCCCCCCCchHHHHHH
Q 034798 9 DPRQPSAAKPYVSTAVAPEDLPVDYSGFIA 38 (83)
Q Consensus 9 DPRRp~~v~py~~p~~~~dd~~~D~~~~l~ 38 (83)
|...-....||..|+... ..|||+.++-
T Consensus 34 d~~g~~~s~~F~~pv~~~--~~PdY~~iIk 61 (130)
T 3k2j_A 34 NNQGQLIAEPFYHLPSKK--KYPDYYQQIK 61 (130)
T ss_dssp CSSSCBTTGGGSSCCCTT--TCHHHHHHCS
T ss_pred cccCCCccHhhcCCCChh--hCccHHHHcC
Confidence 444344566777776433 3789998764
No 7
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=12.28 E-value=2e+02 Score=16.66 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHhh
Q 034798 52 LCSWLAIICCAQSLANMRNMETDLKQISMA 81 (83)
Q Consensus 52 ~~aW~al~~s~~s~~N~r~~e~D~kQi~ss 81 (83)
-|.++|+++.-.. + .-+++|.|.|+.+
T Consensus 8 a~~YAAllL~~~g--~-~~ta~~I~~il~A 34 (69)
T 2lbf_A 8 ACIYSALILHDDE--V-TVTEDKINALIKA 34 (69)
T ss_dssp HHHHHHHHHHHHT--C-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--C-CCCHHHHHHHHHH
Confidence 4778888887774 3 3457788988765
No 8
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=12.04 E-value=1.1e+02 Score=18.85 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=17.5
Q ss_pred CCCCCCCccccccCCCCCCCCCchHHHHHH
Q 034798 9 DPRQPSAAKPYVSTAVAPEDLPVDYSGFIA 38 (83)
Q Consensus 9 DPRRp~~v~py~~p~~~~dd~~~D~~~~l~ 38 (83)
|+..-....||..|+...+ .|||+.++-
T Consensus 25 d~~g~~~s~~F~~~~~~~~--~pdY~~iIk 52 (120)
T 3ljw_A 25 NPSGRLISELFQKLPSKVQ--YPDYYAIIK 52 (120)
T ss_dssp CTTSCBTTGGGSSCCCTTT--CHHHHHHCS
T ss_pred CcCCCcccHHhcCCCCccc--CCChHHHcC
Confidence 4443345667877764433 789998763
No 9
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=11.92 E-value=1.6e+02 Score=16.38 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhcccchhhHHHHhh
Q 034798 53 CSWLAIICCAQSLANMRNMETDLKQISMA 81 (83)
Q Consensus 53 ~aW~al~~s~~s~~N~r~~e~D~kQi~ss 81 (83)
|..+++++.... + .-+++|.|.|+.+
T Consensus 3 ~~yAallL~~~g--~-~~t~~~I~~il~a 28 (58)
T 3a1y_A 3 YVYAALLLHSVG--K-EINEENLKAVLQA 28 (58)
T ss_dssp HHHHHHHHHHTT--C-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--C-CCCHHHHHHHHHH
Confidence 456667666655 2 4457788888875
No 10
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=11.75 E-value=1.2e+02 Score=18.73 Aligned_cols=19 Identities=0% Similarity=0.195 Sum_probs=13.2
Q ss_pred HHHhhhhcccchhhHHHHhhc
Q 034798 62 AQSLANMRNMETDLKQISMAM 82 (83)
Q Consensus 62 ~~s~~N~r~~e~D~kQi~ss~ 82 (83)
+..|+|.+ +++.+|+++++
T Consensus 15 i~~W~~~~--~~~ir~lL~~l 33 (106)
T 3ag7_A 15 IRKWSSGK--SGNIRSLLSTL 33 (106)
T ss_dssp HHHHHTTT--TTCHHHHHTTG
T ss_pred HHHHhccc--HHHHHHHHHHH
Confidence 45566665 46899988765
Done!