Query 034798
Match_columns 83
No_of_seqs 96 out of 106
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 10:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 16.6 71 0.0051 16.1 3.2 20 34-53 14-33 (46)
2 d2bsqe1 a.43.1.8 (E:2-70) Traf 12.8 27 0.002 19.5 0.6 18 63-80 19-36 (69)
3 d1h8ba_ a.39.1.7 (A:) alpha-Ac 11.3 55 0.004 18.2 1.6 24 17-42 46-69 (73)
4 d3cx5d2 f.23.11.1 (D:261-307) 10.6 1.2E+02 0.0085 15.4 3.2 21 33-53 13-33 (47)
5 d1fs1b1 a.157.1.1 (B:86-140) C 9.9 61 0.0044 16.7 1.4 31 44-79 21-54 (55)
6 d1tm9a_ a.225.1.1 (A:) Hypothe 8.0 56 0.0041 20.0 0.8 24 56-79 94-119 (137)
7 d1nexa1 a.157.1.1 (A:116-185) 7.7 92 0.0067 16.6 1.6 31 44-79 22-55 (70)
8 d1x5ua1 d.58.7.1 (A:7-99) Spli 7.2 66 0.0048 17.2 0.8 14 69-82 20-33 (93)
9 d3d7ca1 a.29.2.1 (A:731-832) G 7.2 85 0.0062 17.3 1.3 20 16-37 20-39 (102)
10 d1eqfa2 a.29.2.1 (A:1498-1625) 7.0 85 0.0062 18.2 1.3 21 16-38 28-48 (128)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.55 E-value=71 Score=16.14 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034798 34 SGFIAVIFGLAGVMFRYKLC 53 (83)
Q Consensus 34 ~~~l~~~~~m~gl~mR~K~~ 53 (83)
..+++++.+++...-|.+|.
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666677664
No 2
>d2bsqe1 a.43.1.8 (E:2-70) Trafficking protein A {Neisseria gonorrhoeae [TaxId: 485]}
Probab=12.78 E-value=27 Score=19.51 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.7
Q ss_pred HHhhhhcccchhhHHHHh
Q 034798 63 QSLANMRNMETDLKQISM 80 (83)
Q Consensus 63 ~s~~N~r~~e~D~kQi~s 80 (83)
..-.|+||.|...++|+-
T Consensus 19 rAa~hGrS~E~E~R~IL~ 36 (69)
T d2bsqe1 19 RARAAGRSTEAEIRLILD 36 (69)
T ss_dssp HHHHTTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 345789999999999974
No 3
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.27 E-value=55 Score=18.24 Aligned_cols=24 Identities=25% Similarity=0.702 Sum_probs=15.6
Q ss_pred cccccCCCCCCCCCchHHHHHHHHHH
Q 034798 17 KPYVSTAVAPEDLPVDYSGFIAVIFG 42 (83)
Q Consensus 17 ~py~~p~~~~dd~~~D~~~~l~~~~~ 42 (83)
.||.-|...++ ..||.++.-.++|
T Consensus 46 ~~y~~~~~~~~--ayDY~sF~~~l~g 69 (73)
T d1h8ba_ 46 PAYSGPGSVPG--ALDYAAFSSALYG 69 (73)
T ss_dssp CSCCCSSCCTT--CBCHHHHHHHHTC
T ss_pred cccCCCCCCCC--cccHHHHHHHHhc
Confidence 35666654333 7899998877654
No 4
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.56 E-value=1.2e+02 Score=15.43 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034798 33 YSGFIAVIFGLAGVMFRYKLC 53 (83)
Q Consensus 33 ~~~~l~~~~~m~gl~mR~K~~ 53 (83)
...++++++++++..=|.||.
T Consensus 13 ~~~i~s~l~~~~~y~KR~kWs 33 (47)
T d3cx5d2 13 TVIILSSLYLLSIWVKKFKWA 33 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 345677777777777788875
No 5
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.88 E-value=61 Score=16.73 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh---cccchhhHHHH
Q 034798 44 AGVMFRYKLCSWLAIICCAQSLANM---RNMETDLKQIS 79 (83)
Q Consensus 44 ~gl~mR~K~~aW~al~~s~~s~~N~---r~~e~D~kQi~ 79 (83)
++=++..|-+ +=.+|+.+|++ |+.| ..|+++
T Consensus 21 AAnyL~I~~L----ldl~c~~vA~~ikgKt~e-eiR~~f 54 (55)
T d1fs1b1 21 AANYLDIKGL----LDVTCKTVANMIKGKTPE-EIRKTF 54 (55)
T ss_dssp HHHHHTCHHH----HHHHHHHHHHHHTTCCHH-HHHHHT
T ss_pred HHHHcCcHHH----HHHHHHHHHHHHcCCCHH-HHHHHh
Confidence 4555555544 33455555554 7765 777664
No 6
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=8.01 E-value=56 Score=19.98 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhh--cccchhhHHHH
Q 034798 56 LAIICCAQSLANM--RNMETDLKQIS 79 (83)
Q Consensus 56 ~al~~s~~s~~N~--r~~e~D~kQi~ 79 (83)
+|++||++.|+-- =-+++..|||+
T Consensus 94 ~aiifci~yflyhf~fl~d~nkkq~~ 119 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKDNNKKQII 119 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCCSSCH
T ss_pred ceehhhHHHHHHHhcccccccHHHHH
Confidence 6788888887633 12345667764
No 7
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.70 E-value=92 Score=16.63 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh---cccchhhHHHH
Q 034798 44 AGVMFRYKLCSWLAIICCAQSLANM---RNMETDLKQIS 79 (83)
Q Consensus 44 ~gl~mR~K~~aW~al~~s~~s~~N~---r~~e~D~kQi~ 79 (83)
++=++..|-+ +=.+|+.+|++ |+.| +.++++
T Consensus 22 AAnyL~I~~L----l~l~c~~vA~~ikgkt~e-eiR~~f 55 (70)
T d1nexa1 22 AANYLNIKPL----LDAGCKVVAEMIRGRSPE-EIRRTF 55 (70)
T ss_dssp HHHHHTCHHH----HHHHHHHHHHHHTTCCHH-HHHHHH
T ss_pred HHHHcCcHHH----HHHHHHHHHHHHccCCHH-HHHHHh
Confidence 4555555544 34556666554 7765 777665
No 8
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.21 E-value=66 Score=17.22 Aligned_cols=14 Identities=14% Similarity=0.072 Sum_probs=10.3
Q ss_pred cccchhhHHHHhhc
Q 034798 69 RNMETDLKQISMAM 82 (83)
Q Consensus 69 r~~e~D~kQi~ss~ 82 (83)
..+|.|++++++.|
T Consensus 20 ~~t~~~l~~~F~~~ 33 (93)
T d1x5ua1 20 KVSEPLLWELFLQA 33 (93)
T ss_dssp TCCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHh
Confidence 45677888888765
No 9
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.18 E-value=85 Score=17.34 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=12.6
Q ss_pred ccccccCCCCCCCCCchHHHHH
Q 034798 16 AKPYVSTAVAPEDLPVDYSGFI 37 (83)
Q Consensus 16 v~py~~p~~~~dd~~~D~~~~l 37 (83)
..||..|.... + .|||+..+
T Consensus 20 s~~F~~pv~~~-~-~pdY~~~I 39 (102)
T d3d7ca1 20 AWPFMEPVKKS-E-APDYYEVI 39 (102)
T ss_dssp GGGGSSCCCTT-T-STTHHHHC
T ss_pred CCccCCCCChh-h-CcCHHHHc
Confidence 34677765432 2 67998865
No 10
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.04 E-value=85 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=13.6
Q ss_pred ccccccCCCCCCCCCchHHHHHH
Q 034798 16 AKPYVSTAVAPEDLPVDYSGFIA 38 (83)
Q Consensus 16 v~py~~p~~~~dd~~~D~~~~l~ 38 (83)
..||..|... + ..|||+..+.
T Consensus 28 a~pF~~pVd~-~-~~PdY~~vIk 48 (128)
T d1eqfa2 28 SWPFHHPVNK-K-FVPDYYKVIV 48 (128)
T ss_dssp CGGGTSCCCT-T-TSTTHHHHCS
T ss_pred CChhcCCCCc-c-cCcCHHHHcC
Confidence 4578877543 2 2679998753
Done!