Query 034805
Match_columns 82
No_of_seqs 55 out of 57
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12095 DUF3571: Protein of u 100.0 2E-39 4.4E-44 214.1 6.8 72 2-81 6-77 (83)
2 PHA03373 tegument protein; Pro 76.7 5.8 0.00013 31.1 4.7 50 7-65 21-70 (247)
3 PF12091 DUF3567: Protein of u 64.0 3.8 8.1E-05 27.5 1.1 14 1-15 3-16 (85)
4 PRK10941 hypothetical protein; 59.4 33 0.00072 26.3 5.7 52 8-66 135-186 (269)
5 PF05721 PhyH: Phytanoyl-CoA d 46.7 17 0.00038 23.7 2.1 19 5-28 2-20 (211)
6 COG2912 Uncharacterized conser 45.5 36 0.00078 26.8 3.9 55 5-66 132-186 (269)
7 PLN03107 eukaryotic translatio 45.0 25 0.00054 25.4 2.8 35 2-36 93-133 (159)
8 PF14584 DUF4446: Protein of u 44.6 22 0.00048 25.4 2.4 27 2-28 117-146 (151)
9 PF08343 RNR_N: Ribonucleotide 41.8 53 0.0011 21.3 3.7 22 46-67 34-55 (82)
10 TIGR01280 xseB exodeoxyribonuc 41.6 49 0.0011 20.5 3.4 25 21-49 1-25 (67)
11 cd04470 S1_EF-P_repeat_1 S1_EF 40.6 20 0.00044 21.6 1.5 34 2-35 8-41 (61)
12 cd02419 Peptidase_C39C A sub-f 40.0 36 0.00078 21.3 2.7 27 5-31 93-119 (127)
13 PF13474 SnoaL_3: SnoaL-like d 38.9 61 0.0013 19.5 3.5 31 7-37 26-56 (121)
14 PF10436 BCDHK_Adom3: Mitochon 37.6 52 0.0011 23.3 3.4 43 23-71 28-70 (164)
15 PF00113 Enolase_C: Enolase, C 37.4 29 0.00063 27.2 2.3 32 7-38 116-150 (295)
16 PLN03145 Protein phosphatase 2 37.4 1.1E+02 0.0023 24.5 5.5 50 5-70 267-316 (365)
17 PF08852 DUF1822: Protein of u 36.7 37 0.00081 26.9 2.8 42 29-79 36-77 (368)
18 cd02983 P5_C P5 family, C-term 35.9 70 0.0015 21.6 3.8 40 8-48 84-129 (130)
19 TIGR02178 yeiP elongation fact 35.2 28 0.0006 25.8 1.8 34 2-35 73-106 (186)
20 PRK14578 elongation factor P; 35.0 28 0.00061 25.7 1.8 34 2-35 75-108 (187)
21 cd02425 Peptidase_C39F A sub-f 34.5 51 0.0011 20.5 2.7 25 5-29 94-118 (126)
22 PRK00982 acpP acyl carrier pro 34.3 70 0.0015 19.0 3.2 37 22-66 39-76 (78)
23 PRK14063 exodeoxyribonuclease 34.2 77 0.0017 20.2 3.5 27 19-49 3-29 (76)
24 PF00159 Hormone_3: Pancreatic 33.7 58 0.0013 18.5 2.6 22 12-33 3-24 (36)
25 TIGR03355 VI_chp_2 type VI sec 33.6 18 0.00039 30.5 0.7 31 8-38 383-414 (473)
26 PRK00977 exodeoxyribonuclease 32.6 1.1E+02 0.0023 19.7 4.0 31 15-49 4-34 (80)
27 PF07453 NUMOD1: NUMOD1 domain 32.6 27 0.00059 18.6 1.1 14 50-63 13-26 (37)
28 PRK05828 acyl carrier protein; 31.9 66 0.0014 20.6 3.0 17 21-37 1-17 (84)
29 PF07766 LETM1: LETM1-like pro 30.4 44 0.00095 25.4 2.2 20 20-39 238-257 (268)
30 COG4030 Uncharacterized protei 29.7 55 0.0012 26.4 2.7 49 18-74 153-206 (315)
31 cd04436 DEP_fRgd2 DEP (Disheve 29.5 89 0.0019 20.7 3.3 42 26-67 2-43 (84)
32 PRK05350 acyl carrier protein; 29.4 87 0.0019 19.2 3.1 18 21-38 2-19 (82)
33 PF11918 DUF3436: Domain of un 29.2 46 0.001 20.7 1.8 14 20-33 37-50 (55)
34 PF13986 DUF4224: Domain of un 28.2 38 0.00082 19.7 1.3 22 54-75 15-36 (47)
35 KOG3424 40S ribosomal protein 28.1 80 0.0017 22.8 3.1 28 10-39 26-53 (132)
36 PF02037 SAP: SAP domain; Int 28.0 67 0.0015 17.3 2.2 13 22-34 23-35 (35)
37 cd08203 SAM_PNT Sterile alpha 28.0 82 0.0018 19.2 2.8 30 20-57 4-34 (66)
38 cd00126 PAH Pancreatic Hormone 27.9 93 0.002 17.7 2.8 22 12-33 3-24 (36)
39 cd08757 SAM_PNT_ESE Sterile al 27.5 49 0.0011 20.4 1.8 37 20-64 4-43 (68)
40 PF13193 AMP-binding_C: AMP-bi 27.3 54 0.0012 19.2 1.8 17 22-38 36-52 (73)
41 PF02260 FATC: FATC domain; I 27.0 25 0.00055 19.2 0.3 15 55-69 4-18 (33)
42 cd08320 Pyrin_NALPs Pyrin deat 26.7 1.8E+02 0.0039 18.7 4.8 49 20-69 9-57 (86)
43 cd02418 Peptidase_C39B A sub-f 26.6 81 0.0018 19.8 2.7 24 6-29 100-123 (136)
44 cd08532 SAM_PNT-PDEF-like Ster 26.4 92 0.002 19.9 2.9 29 19-54 11-39 (76)
45 PF11338 DUF3140: Protein of u 26.4 40 0.00087 22.8 1.3 18 20-37 7-24 (92)
46 PF14000 Packaging_FI: DNA pac 26.3 1.3E+02 0.0027 21.3 3.8 41 22-71 1-41 (125)
47 PF13297 Telomere_Sde2_2: Telo 26.3 1.2E+02 0.0026 19.1 3.3 37 19-66 5-45 (60)
48 PRK04081 hypothetical protein; 25.5 1.1E+02 0.0023 23.7 3.5 31 8-38 73-103 (207)
49 PF05201 GlutR_N: Glutamyl-tRN 25.2 25 0.00053 24.5 0.1 61 9-71 39-103 (152)
50 PF09743 DUF2042: Uncharacteri 25.2 64 0.0014 24.9 2.4 65 11-75 41-106 (272)
51 PF12939 DUF3837: Domain of un 25.1 99 0.0021 21.3 3.0 40 16-71 42-81 (102)
52 PRK10853 putative reductase; P 25.0 1.9E+02 0.004 19.3 4.3 47 18-66 34-86 (118)
53 PRK04542 elongation factor P; 24.7 58 0.0012 24.2 2.0 34 2-35 75-108 (189)
54 PF13499 EF-hand_7: EF-hand do 24.4 37 0.00081 19.2 0.7 19 19-37 15-33 (66)
55 PTZ00224 protein phosphatase 2 24.0 2.6E+02 0.0057 22.5 5.7 48 7-70 209-257 (381)
56 PF07293 DUF1450: Protein of u 24.0 75 0.0016 20.6 2.2 24 15-38 53-76 (78)
57 PRK12426 elongation factor P; 23.9 58 0.0013 24.1 1.8 33 2-34 73-105 (185)
58 COG4296 Uncharacterized protei 23.9 57 0.0012 24.1 1.8 16 16-31 97-112 (156)
59 KOG0700 Protein phosphatase 2C 23.8 1.2E+02 0.0026 25.3 3.7 35 5-39 328-363 (390)
60 cd02420 Peptidase_C39D A sub-f 23.6 1.1E+02 0.0023 19.2 2.8 24 6-29 94-117 (125)
61 PF01132 EFP: Elongation facto 22.9 9.9 0.00022 22.5 -2.0 33 2-34 7-39 (55)
62 PF02609 Exonuc_VII_S: Exonucl 22.9 1.2E+02 0.0027 17.5 2.8 22 24-49 2-23 (53)
63 PRK12449 acyl carrier protein; 22.7 1E+02 0.0022 18.5 2.5 17 21-37 1-17 (80)
64 PRK00529 elongation factor P; 22.4 74 0.0016 23.0 2.1 33 2-34 73-105 (186)
65 cd05213 NAD_bind_Glutamyl_tRNA 22.3 96 0.0021 23.6 2.8 57 8-71 41-104 (311)
66 cd08536 SAM_PNT-Mae Sterile al 22.0 1.2E+02 0.0026 18.8 2.8 33 20-60 4-37 (66)
67 cd02423 Peptidase_C39G A sub-f 22.0 1.2E+02 0.0025 18.9 2.8 25 6-30 98-122 (129)
68 PF13369 Transglut_core2: Tran 21.6 2.7E+02 0.0059 18.9 4.8 51 7-64 101-151 (152)
69 PRK09860 putative alcohol dehy 21.4 1.4E+02 0.0031 23.4 3.7 40 23-69 320-359 (383)
70 PF06348 DUF1059: Protein of u 20.8 1.9E+02 0.0042 17.2 3.4 27 22-51 21-47 (57)
71 PRK13669 hypothetical protein; 20.7 1E+02 0.0022 20.2 2.3 25 14-38 52-76 (78)
72 PF08216 CTNNBL: Catenin-beta- 20.7 68 0.0015 22.1 1.5 44 14-63 50-96 (108)
73 COG3905 Predicted transcriptio 20.6 86 0.0019 21.0 2.0 19 19-37 61-79 (83)
74 cd08192 Fe-ADH7 Iron-containin 20.5 1.5E+02 0.0032 22.9 3.5 39 23-68 310-348 (370)
75 smart00309 PAH Pancreatic horm 20.4 1.6E+02 0.0035 16.8 2.8 21 13-33 4-24 (36)
76 PF14829 GPAT_N: Glycerol-3-ph 20.3 1.4E+02 0.0031 19.7 3.0 23 22-51 10-32 (77)
77 TIGR02408 ectoine_ThpD ectoine 20.3 94 0.002 23.2 2.4 27 3-36 25-51 (277)
78 cd01813 UBP_N UBP ubiquitin pr 20.2 48 0.001 20.4 0.7 26 23-54 18-43 (74)
79 TIGR00037 eIF_5A translation i 20.1 95 0.002 21.4 2.2 19 2-20 79-97 (130)
No 1
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=100.00 E-value=2e-39 Score=214.13 Aligned_cols=72 Identities=47% Similarity=0.898 Sum_probs=56.1
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccccccCCcceeee
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQC 81 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELEi~pg~~~lQW 81 (82)
|| ++|||||||||+||||||++||++|||+||++. ++||+||+||+|+++||+||++|+|||||+|| +||||
T Consensus 6 m~-~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~------~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg-~~lQW 77 (83)
T PF12095_consen 6 MY-QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQ------DDLPPDLAKFSSVEEQAQYLLDTACELEIGPG-GYLQW 77 (83)
T ss_dssp S------EEEEESSS-SEEE-HHHHHHHHHHHHHHT------TTS-HHHHH---HHHHHHHHHHH---EEEETT-EEEEE
T ss_pred hh-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcC------CCCCHHHHhCCCHHHHHHHHHHhceeeecCCC-CEEEE
Confidence 89 999999999999999999999999999999994 48999999999999999999999999999999 69999
No 2
>PHA03373 tegument protein; Provisional
Probab=76.72 E-value=5.8 Score=31.12 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=43.5
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHH
Q 034805 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLIT 65 (82)
Q Consensus 7 D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lld 65 (82)
-.||+|-|..+ +..+||.+.|++-..+. +-.|.||..|.-..+-..+|+.
T Consensus 21 a~Y~lL~~sed---ve~~eL~~flee~f~~l------Git~~Di~~~~rDtEv~khLL~ 70 (247)
T PHA03373 21 AEYVLLRPSED---VELAELEAFLEENFKDF------GITQADIRSLSRDTEVVKHLLQ 70 (247)
T ss_pred CceEEecCcch---hhHHHHHHHHHHhHHhc------CcCHHHHHHHhhhhHHHHHHHH
Confidence 46999988763 77899999999988888 5789999999999999999975
No 3
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=64.01 E-value=3.8 Score=27.51 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.2
Q ss_pred CCccccCceEEecCC
Q 034805 1 MAYSRTETYVLLEPG 15 (82)
Q Consensus 1 ~my~q~D~yVvLEp~ 15 (82)
|+| ++|+|+|++=+
T Consensus 3 miY-nSd~y~VV~~~ 16 (85)
T PF12091_consen 3 MIY-NSDNYCVVEFP 16 (85)
T ss_pred eee-cCCceEEEEec
Confidence 799 99999999854
No 4
>PRK10941 hypothetical protein; Provisional
Probab=59.38 E-value=33 Score=26.33 Aligned_cols=52 Identities=21% Similarity=0.079 Sum_probs=37.9
Q ss_pred ceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHh
Q 034805 8 TYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (82)
Q Consensus 8 ~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt 66 (82)
..+++.|-.. ++||++++..||+..+.... .|-++--+-.|..+-..++++|
T Consensus 135 ~~~~IDPf~G-~~L~~~~l~~~L~~~~g~~~------~l~~~~L~~a~~~~il~Rml~n 186 (269)
T PRK10941 135 EMWLINPFNG-ETLDEHTLEVWLKGNISPSA------ELFNEDLDEADNIEVIRKLLDT 186 (269)
T ss_pred ceEEEeCCCC-CCCCHHHHHHHHHhhcCCcc------cCCHHHcCCCCHHHHHHHHHHH
Confidence 3677899664 49999999999997776552 4555555556677777777776
No 5
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=46.73 E-value=17 Score=23.70 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=13.1
Q ss_pred ccCceEEecCCCCccccCHHHHHH
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKA 28 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~ 28 (82)
+++.|||++. +++++++..
T Consensus 2 ~~~Gyvvi~~-----~l~~~~~~~ 20 (211)
T PF05721_consen 2 RRDGYVVIRN-----VLSPEEVER 20 (211)
T ss_dssp HHHSEEEETT-----SS-HHHHHH
T ss_pred cCCcEEEECC-----cCCHHHHHH
Confidence 6789999965 888855433
No 6
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.51 E-value=36 Score=26.78 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=39.9
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHh
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt 66 (82)
.+|.+.++.|..++ .++..++..|+++-+.-.. .-+|.+|++- +..+-..+|++|
T Consensus 132 ~~~~~~~idP~ng~-~l~~~~l~~~l~~~~~~~a-----el~~~~L~~a-~~~~il~rll~~ 186 (269)
T COG2912 132 VEDEPLLIDPFNGG-TLSQHELQEWLKGTIGPSA-----ELLPEDLKQA-SNREILSRLLRN 186 (269)
T ss_pred cCCCceeeCCCCCC-cccHHHHHHHHHhccCcHh-----hhhhhhhhhc-cHHHHHHHHHHH
Confidence 56789999999988 9999999999999877332 2466666654 444555555554
No 7
>PLN03107 eukaryotic translation initiation factor 5A; Provisional
Probab=44.99 E-value=25 Score=25.36 Aligned_cols=35 Identities=9% Similarity=0.315 Sum_probs=26.9
Q ss_pred CccccCce-EEecC--CCCccc-cC--HHHHHHHHHHHHHh
Q 034805 2 AYSRTETY-VLLEP--GVEEKF-VT--EEELKARLKYWLEN 36 (82)
Q Consensus 2 my~q~D~y-VvLEp--~~~Eqf-lT--~~Ell~~Lk~~L~~ 36 (82)
+|.+.|.| ++|.+ ..-||+ |+ ..|+..+|+.+...
T Consensus 93 ly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~~ 133 (159)
T PLN03107 93 IDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFDE 133 (159)
T ss_pred EEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHhC
Confidence 46667897 99988 367777 77 46999999988753
No 8
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=44.55 E-value=22 Score=25.37 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.6
Q ss_pred CccccCceEEecC---CCCccccCHHHHHH
Q 034805 2 AYSRTETYVLLEP---GVEEKFVTEEELKA 28 (82)
Q Consensus 2 my~q~D~yVvLEp---~~~EqflT~~Ell~ 28 (82)
+||+++.|+-.-| |+....||+||-.+
T Consensus 117 I~~Re~s~~YaK~I~~G~S~~~LS~EE~ea 146 (151)
T PF14584_consen 117 IHSREESRTYAKPIVNGQSSYPLSEEEKEA 146 (151)
T ss_pred eecCCCcEEEEEEecCCcccccCCHHHHHH
Confidence 6899999998766 99999999999765
No 9
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=41.82 E-value=53 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=15.6
Q ss_pred CChhhhccCCHHHHHHHHHHhc
Q 034805 46 LPPDLAKFATIDEAVAFLITNV 67 (82)
Q Consensus 46 LP~dL~k~~s~~~qa~~Lldt~ 67 (82)
.-|-..+|.|+.+...||+++-
T Consensus 34 V~pnt~~F~S~~Erl~yLv~~~ 55 (82)
T PF08343_consen 34 VNPNTVKFNSLKERLDYLVEND 55 (82)
T ss_dssp TGGGB---SSHHHHHHHHHHTT
T ss_pred cccceeecCCHHHHHHHHHHcC
Confidence 3456789999999999999874
No 10
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=41.57 E-value=49 Score=20.54 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChh
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPD 49 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (82)
+|-+|.+++|..+++++.. +++|-+
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~----~~l~Le 25 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLES----GDLALE 25 (67)
T ss_pred CCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 5778999999999999986 377764
No 11
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=40.61 E-value=20 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=24.4
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (82)
+|.+.+.||++.+..=||+-=+.+.+..=+.||.
T Consensus 8 lY~dg~~~~FMd~etyeQ~~i~~~~igd~~~~L~ 41 (61)
T cd04470 8 LYKDGDNYVFMDTETYEQIELPKEALGDAAKFLK 41 (61)
T ss_pred EEeCCCEEEEeCCCCceEEEECHHHhhhHHhhCc
Confidence 6878899999999999998444555544445554
No 12
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=40.05 E-value=36 Score=21.34 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=19.7
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHH
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKARLK 31 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~Lk 31 (82)
..+.+++..|+.+.+.+|.+|+.+...
T Consensus 93 ~~~~~~i~dp~~~~~~~~~~el~~~~~ 119 (127)
T cd02419 93 SRRRIVIHDPALGKRKLSLEEASRHFT 119 (127)
T ss_pred cCCEEEEECCccCCEEEcHHHHHhhCC
Confidence 345667778887777899999876543
No 13
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=38.91 E-value=61 Score=19.50 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=28.7
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhh
Q 034805 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENW 37 (82)
Q Consensus 7 D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~ 37 (82)
+.++...++.++.+-+.+++.+.++.+++..
T Consensus 26 ~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 56 (121)
T PF13474_consen 26 DDFVFFGTGPGEIWRGREAIRAYFERDFESF 56 (121)
T ss_dssp EEEEEEETTSSSEEESHHHHHHHHHHHHHTH
T ss_pred CCEEEEcCCCCceECCHHHHHHHHHHHhhhC
Confidence 7889999999999999999999999999876
No 14
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=37.60 E-value=52 Score=23.30 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccccc
Q 034805 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (82)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELE 71 (82)
..||.-+|...+...+ .||..+..-+++..-.++-+++.++|-
T Consensus 28 ~~ELpvRlA~ri~~l~------~LP~~l~~~p~i~~V~~~Y~~sF~~L~ 70 (164)
T PF10436_consen 28 RRELPVRLAHRIRELQ------NLPYILVSNPSIQQVYEWYLQSFEELR 70 (164)
T ss_dssp HHHHHHHHHHHHHHHT------TS-HHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hCChhhccChhHHHHHHHHHHHHHHHH
Confidence 5688999999999994 799999999999999999999988874
No 15
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=37.40 E-value=29 Score=27.18 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.6
Q ss_pred CceEEe---cCCCCccccCHHHHHHHHHHHHHhhh
Q 034805 7 ETYVLL---EPGVEEKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 7 D~yVvL---Ep~~~EqflT~~Ell~~Lk~~L~~~~ 38 (82)
..|.+- .++.+.+.+|++|+.+..++|+.++|
T Consensus 116 gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YP 150 (295)
T PF00113_consen 116 GKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYP 150 (295)
T ss_dssp TEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-
T ss_pred CeEEEeecccccccccccCHHHHHHHHHHHHHhcC
Confidence 345543 13456789999999999999999999
No 16
>PLN03145 Protein phosphatase 2c; Provisional
Probab=37.36 E-value=1.1e+02 Score=24.47 Aligned_cols=50 Identities=4% Similarity=-0.030 Sum_probs=38.3
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccc
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 70 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CEL 70 (82)
..|.|+||-.+-==.+++.+|....++..|+.. .+.+++|+.|++.++.-
T Consensus 267 ~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~----------------~~p~~aa~~Lv~~Al~r 316 (365)
T PLN03145 267 EEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH----------------NDPVMCSKELVDEALKR 316 (365)
T ss_pred CCCEEEEEeCCccccCcCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHhC
Confidence 357788888876677899999988887777654 23468899999988765
No 17
>PF08852 DUF1822: Protein of unknown function (DUF1822); InterPro: IPR014951 This group of proteins are functionally uncharacterised.
Probab=36.74 E-value=37 Score=26.87 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=34.5
Q ss_pred HHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccccccCCccee
Q 034805 29 RLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSI 79 (82)
Q Consensus 29 ~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELEi~pg~~~l 79 (82)
-+..||+.+ +.|.++..-++... +..+++++|+|.|+.+ |.|
T Consensus 36 av~~wL~~~-------~~~~~l~~~~~~~~-~~~~~~~V~~l~i~~~-~kl 77 (368)
T PF08852_consen 36 AVENWLQEM-------DIPTNLEVSDSWNP-LPRFWEDVADLQIGDF-GKL 77 (368)
T ss_pred HHHHHHHhc-------CCCcCcccCccccH-HHHHHHHccCcEEccC-ceE
Confidence 457788887 58888988888887 7888899999999977 554
No 18
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=35.92 E-value=70 Score=21.56 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=27.7
Q ss_pred ceEEecCCCCcccc------CHHHHHHHHHHHHHhhhccCCCCCCCh
Q 034805 8 TYVLLEPGVEEKFV------TEEELKARLKYWLENWAGQVGKGGLPP 48 (82)
Q Consensus 8 ~yVvLEp~~~Eqfl------T~~Ell~~Lk~~L~~~~~~~~~~~LP~ 48 (82)
.++++.+... ++. |.+.+.+++++.+...-..+.+++||.
T Consensus 84 ~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p~ 129 (130)
T cd02983 84 AMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPTLPVNGLPK 129 (130)
T ss_pred EEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCcccccCCCCCC
Confidence 4566666443 554 999999999999988765555556663
No 19
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=35.21 E-value=28 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=24.9
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (82)
+|.+.++||+|.+..=||+.=+++++..=..||.
T Consensus 73 lY~dg~~~~FMD~etyEQ~~i~~~~lgd~~~fL~ 106 (186)
T TIGR02178 73 SYKDGEEYVFMDEEDYTPYTFDKDAIEDELLFIS 106 (186)
T ss_pred EEeCCCeEEEccCCCcEEEEeCHHHhhhhhhhhh
Confidence 5878899999999889999545556554445554
No 20
>PRK14578 elongation factor P; Provisional
Probab=35.02 E-value=28 Score=25.73 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.8
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (82)
+|.+.|+||+|.+..=||+-=+.|++..-+.||.
T Consensus 75 lY~dg~~~~FMD~etyEQ~~i~~~~~g~~~~fL~ 108 (187)
T PRK14578 75 LYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLL 108 (187)
T ss_pred EEeCCCEEEEecCCCcEEEEecHHHhhhHHhhcc
Confidence 6877899999999999999555566655555554
No 21
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=34.49 E-value=51 Score=20.47 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=18.8
Q ss_pred ccCceEEecCCCCccccCHHHHHHH
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKAR 29 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~ 29 (82)
+.+++++..|+...+.+|.+|+.+.
T Consensus 94 ~~~~~~i~dp~~~~~~~~~~~l~~~ 118 (126)
T cd02425 94 KKNKVTIVDPAIGRIKISIDEFLEN 118 (126)
T ss_pred ECCEEEEEcCCCCCEEECHHHHHhh
Confidence 3456777889888778999888663
No 22
>PRK00982 acpP acyl carrier protein; Provisional
Probab=34.27 E-value=70 Score=18.98 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChh-hhccCCHHHHHHHHHHh
Q 034805 22 TEEELKARLKYWLENWAGQVGKGGLPPD-LAKFATIDEAVAFLITN 66 (82)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~d-L~k~~s~~~qa~~Lldt 66 (82)
..-++...|++.+.- .+|++ +..++|+.+-+.|+...
T Consensus 39 ~~~~li~~le~~f~i--------~i~~~~~~~~~ti~~l~~~l~~~ 76 (78)
T PRK00982 39 DTVELVMALEEEFGI--------EIPDEDAEKIKTVGDAVDYIEKH 76 (78)
T ss_pred HHHHHHHHHHHHHCC--------CcCHHHHHHcCcHHHHHHHHHHh
Confidence 345666666666522 35544 88899999999988653
No 23
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.16 E-value=77 Score=20.18 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHHHHHhhhccCCCCCCChh
Q 034805 19 KFVTEEELKARLKYWLENWAGQVGKGGLPPD 49 (82)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (82)
+-+|-+|.+.+|..+++++.. +++|-+
T Consensus 3 ~~~sfEeal~~LE~Iv~~LE~----~~l~Le 29 (76)
T PRK14063 3 NKLSFEEAISQLEHLVSKLEQ----GDVPLE 29 (76)
T ss_pred cccCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 447899999999999999986 488865
No 24
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=33.69 E-value=58 Score=18.51 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.9
Q ss_pred ecCCCCccccCHHHHHHHHHHH
Q 034805 12 LEPGVEEKFVTEEELKARLKYW 33 (82)
Q Consensus 12 LEp~~~EqflT~~Ell~~Lk~~ 33 (82)
.+|..|+.|-|++||...+..+
T Consensus 3 ~~P~~P~~~aspeel~~Y~~~L 24 (36)
T PF00159_consen 3 SKPERPGDFASPEELAQYYAAL 24 (36)
T ss_dssp SSSSSSSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
Confidence 4677889999999987766543
No 25
>TIGR03355 VI_chp_2 type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=33.60 E-value=18 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.530 Sum_probs=24.7
Q ss_pred ceE-EecCCCCccccCHHHHHHHHHHHHHhhh
Q 034805 8 TYV-LLEPGVEEKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 8 ~yV-vLEp~~~EqflT~~Ell~~Lk~~L~~~~ 38 (82)
||+ |+--++-=.|.|++++..+|.+||.++-
T Consensus 383 HYlKv~~Rd~IGs~~~~~~~e~~Ln~Wi~~Yv 414 (473)
T TIGR03355 383 HYLKVIQRDKIGSFKERADLERELNNWINQYV 414 (473)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 444 4555556678999999999999999994
No 26
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.62 E-value=1.1e+02 Score=19.66 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCccccCHHHHHHHHHHHHHhhhccCCCCCCChh
Q 034805 15 GVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 49 (82)
Q Consensus 15 ~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (82)
..+.+-+|-++.+++|..++.++.. +++|-|
T Consensus 4 ~~~~~~~sfEea~~~LEeIv~~LE~----~~l~Le 34 (80)
T PRK00977 4 AKKSKPLSFEEALAELEEIVTRLES----GDLPLE 34 (80)
T ss_pred ccCCCcCCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 3455668999999999999999996 378865
No 27
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=32.59 E-value=27 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.6
Q ss_pred hhccCCHHHHHHHH
Q 034805 50 LAKFATIDEAVAFL 63 (82)
Q Consensus 50 L~k~~s~~~qa~~L 63 (82)
+..|+|+.++|++|
T Consensus 13 i~~F~Si~eAa~~l 26 (37)
T PF07453_consen 13 IKSFDSIREAARYL 26 (37)
T ss_pred EEEEcCHHHHHHHh
Confidence 68899999999987
No 28
>PRK05828 acyl carrier protein; Validated
Probab=31.90 E-value=66 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.0
Q ss_pred cCHHHHHHHHHHHHHhh
Q 034805 21 VTEEELKARLKYWLENW 37 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~ 37 (82)
+|.+|++++++.+++..
T Consensus 1 m~~~eI~~~i~~ii~e~ 17 (84)
T PRK05828 1 MQEMEILLKIKEIAKKK 17 (84)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 58899999999999973
No 29
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=30.36 E-value=44 Score=25.36 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=15.5
Q ss_pred ccCHHHHHHHHHHHHHhhhc
Q 034805 20 FVTEEELKARLKYWLENWAG 39 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~ 39 (82)
-+|.+++..||+.||+-.-.
T Consensus 238 ~~s~~~lr~~L~~WL~ls~~ 257 (268)
T PF07766_consen 238 GLSEEELREWLKQWLQLSSN 257 (268)
T ss_dssp T--HHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcc
Confidence 47999999999999987754
No 30
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.72 E-value=55 Score=26.45 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=37.4
Q ss_pred ccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHH-----HHHHHhcccccccC
Q 034805 18 EKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAV-----AFLITNVCELELQG 74 (82)
Q Consensus 18 EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa-----~~Lldt~CELEi~p 74 (82)
+.-++.+||.++|-++..++ .|-++.|+-+--+++ ..+++-+||||.-+
T Consensus 153 ~~~~~geelfe~lDe~F~rL--------ip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d 206 (315)
T COG4030 153 IASLSGEELFEKLDELFSRL--------IPSEVGKIVESVKAVGGGEKAKIMEGYCELEGID 206 (315)
T ss_pred cccccHHHHHHHHHHHHhhc--------CHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCC
Confidence 44578899999999999987 677777775544433 47899999999654
No 31
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=29.45 E-value=89 Score=20.73 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhc
Q 034805 26 LKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNV 67 (82)
Q Consensus 26 ll~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~ 67 (82)
+++-|+..|++.|-.--+-.+|-.-++..|-++-++||.++-
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~ 43 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENM 43 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcC
Confidence 344455566665532233456666666777777777776654
No 32
>PRK05350 acyl carrier protein; Provisional
Probab=29.42 E-value=87 Score=19.15 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHHHhhh
Q 034805 21 VTEEELKARLKYWLENWA 38 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~ 38 (82)
+|.+++.++++.+|++..
T Consensus 2 m~~~~i~~~v~~ii~~~~ 19 (82)
T PRK05350 2 MTREEILERLRAILVELF 19 (82)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 578899999999998775
No 33
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=29.18 E-value=46 Score=20.71 Aligned_cols=14 Identities=36% Similarity=0.209 Sum_probs=12.1
Q ss_pred ccCHHHHHHHHHHH
Q 034805 20 FVTEEELKARLKYW 33 (82)
Q Consensus 20 flT~~Ell~~Lk~~ 33 (82)
-||+|||+++|+.-
T Consensus 37 ~Lt~EqLla~lq~~ 50 (55)
T PF11918_consen 37 NLTPEQLLAMLQKS 50 (55)
T ss_pred CcCHHHHHHHHHhh
Confidence 58999999999864
No 34
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=28.24 E-value=38 Score=19.75 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHhcccccccCC
Q 034805 54 ATIDEAVAFLITNVCELELQGD 75 (82)
Q Consensus 54 ~s~~~qa~~Lldt~CELEi~pg 75 (82)
.-...|+++|..+.=-..+.++
T Consensus 15 k~~~~Q~~~L~~~Gi~~~~~~~ 36 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGIPFVVRAD 36 (47)
T ss_pred CCHHHHHHHHHHCCCeeEECCC
Confidence 3456777777777666666555
No 35
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.12 E-value=80 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred EEecCCCCccccCHHHHHHHHHHHHHhhhc
Q 034805 10 VLLEPGVEEKFVTEEELKARLKYWLENWAG 39 (82)
Q Consensus 10 VvLEp~~~EqflT~~Ell~~Lk~~L~~~~~ 39 (82)
+||-||.+ .+|.+|+.++|...-..-|+
T Consensus 26 dvlHPG~a--~vsK~EirEKla~mYkt~~d 53 (132)
T KOG3424|consen 26 DVLHPGKA--NVSKTEIREKLAKMYKTTPD 53 (132)
T ss_pred EEecCCCC--CCCHHHHHHHHHHHhcCCcc
Confidence 58899986 69999999999999888775
No 36
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.04 E-value=67 Score=17.29 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHH
Q 034805 22 TEEELKARLKYWL 34 (82)
Q Consensus 22 T~~Ell~~Lk~~L 34 (82)
+.++|+++|++++
T Consensus 23 ~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 23 KKAELIERLKEHL 35 (35)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC
Confidence 3566777776654
No 37
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=27.95 E-value=82 Score=19.17 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCCh-hhhccCCHH
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLPP-DLAKFATID 57 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~-dL~k~~s~~ 57 (82)
.=|++...+||.-..... +||+ ++.+| ..+
T Consensus 4 ~Wt~~~V~~Wl~w~~~~f-------~L~~~~~~~F-~m~ 34 (66)
T cd08203 4 LWTKEHVLQWLEWAVKEF-------SLPPIDFSKF-NMN 34 (66)
T ss_pred hCCHHHHHHHHHHHHHhc-------CCCCCChhhc-CCC
Confidence 358899999999888888 6776 88888 443
No 38
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=27.94 E-value=93 Score=17.71 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.7
Q ss_pred ecCCCCccccCHHHHHHHHHHH
Q 034805 12 LEPGVEEKFVTEEELKARLKYW 33 (82)
Q Consensus 12 LEp~~~EqflT~~Ell~~Lk~~ 33 (82)
.+|..|..|-|++||...++++
T Consensus 3 ~~P~~Pg~~a~~eel~~Y~~~L 24 (36)
T cd00126 3 SKPENPGDDASPEELRQYLAAL 24 (36)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
Confidence 4678888999999998877664
No 39
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=27.52 E-value=49 Score=20.44 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=26.3
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCC---hhhhccCCHHHHHHHHH
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLP---PDLAKFATIDEAVAFLI 64 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP---~dL~k~~s~~~qa~~Ll 64 (82)
.=|++..++||.-..... .+| .++++| .++-++--.+
T Consensus 4 ~Wt~~~V~~Wl~w~~~e~-------~l~~~~i~~~~F-~m~Gk~LC~m 43 (68)
T cd08757 4 YWTKNDVLEWLQFVAEQN-------KLDAECISFQKF-NIDGQTLCSM 43 (68)
T ss_pred hCCHHHHHHHHHHHHHHc-------CCCCCcCCcccc-CCCHHHHHcC
Confidence 458899999999888876 354 488888 6665554333
No 40
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=27.29 E-value=54 Score=19.19 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHhhh
Q 034805 22 TEEELKARLKYWLENWA 38 (82)
Q Consensus 22 T~~Ell~~Lk~~L~~~~ 38 (82)
+.+++.++++..|..+.
T Consensus 36 ~~~~i~~~~~~~l~~~~ 52 (73)
T PF13193_consen 36 DEEEIRDHLRDKLPPYM 52 (73)
T ss_dssp HHHHHHHHHHHHS-GGG
T ss_pred eecccccchhhhCCCcc
Confidence 55899999999888873
No 41
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=27.04 E-value=25 Score=19.20 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHhccc
Q 034805 55 TIDEAVAFLITNVCE 69 (82)
Q Consensus 55 s~~~qa~~Lldt~CE 69 (82)
|+++||+.||+.+=+
T Consensus 4 sv~~qV~~LI~~At~ 18 (33)
T PF02260_consen 4 SVEQQVDELISEATD 18 (33)
T ss_dssp -STHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC
Confidence 678899999986643
No 42
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=26.74 E-value=1.8e+02 Score=18.67 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
-||.+|+ .+.|..|.+.+..-|+..+|..--+-.|..+=|..|++.+.+
T Consensus 9 ~L~~~El-kkFK~~L~~~~~~~~~~~Ip~~~le~ad~~dLa~lLv~~y~~ 57 (86)
T cd08320 9 ELSKEEL-KKFKLLLKTEPLQSGLKPIPWTEVKKADGEDLAELLVEHYGG 57 (86)
T ss_pred HcCHHHH-HHHHHHHhccchhccCCCCChHhHhcCCHHHHHHHHHHHcCh
Confidence 4677776 467888888765456678997776677888889999988765
No 43
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=26.64 E-value=81 Score=19.80 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=16.8
Q ss_pred cCceEEecCCCCccccCHHHHHHH
Q 034805 6 TETYVLLEPGVEEKFVTEEELKAR 29 (82)
Q Consensus 6 ~D~yVvLEp~~~EqflT~~Ell~~ 29 (82)
.+.+++..|....+.+|.+|+.+.
T Consensus 100 ~~~~~i~dp~~~~~~~~~~ef~~~ 123 (136)
T cd02418 100 KKKILIADPAVGITKISKEEFEKE 123 (136)
T ss_pred CCEEEEECCCCCCEEeeHHHHHhh
Confidence 344556678777778888888653
No 44
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=26.39 E-value=92 Score=19.91 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.6
Q ss_pred cccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccC
Q 034805 19 KFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFA 54 (82)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 54 (82)
+.=|++....||.-...+. +||+++++|.
T Consensus 11 ~~Ws~~~V~~WL~w~~~ef-------~L~~~~~~F~ 39 (76)
T cd08532 11 YQWSPANVQKWLLWTEHQY-------RLPPPPRCFE 39 (76)
T ss_pred hhcCHHHHHHHHHHHHHHh-------CCCCchhcCC
Confidence 4569999999999999988 6888888883
No 45
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=26.37 E-value=40 Score=22.76 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=12.7
Q ss_pred ccCHHHHHHHHHHHHHhh
Q 034805 20 FVTEEELKARLKYWLENW 37 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~ 37 (82)
-+|++||.+||+.--++-
T Consensus 7 NMt~~EL~~WL~t~~S~~ 24 (92)
T PF11338_consen 7 NMTPAELEDWLRTDESKS 24 (92)
T ss_pred CCCHHHHHHHHcCccccc
Confidence 479999988887544433
No 46
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=26.35 E-value=1.3e+02 Score=21.34 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccccc
Q 034805 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (82)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELE 71 (82)
|++|++++|+++=..+ =++..-=+|..+-+|++.+===||+
T Consensus 1 tKee~l~RL~eLa~~L---------GRE~d~SGSaAeiaqRVAEwEEEl~ 41 (125)
T PF14000_consen 1 TKEENLARLRELAAQL---------GREPDMSGSAAEIAQRVAEWEEELD 41 (125)
T ss_pred ChHHHHHHHHHHHHHh---------CcCCCccccHHHHHHHHHHHHHHHh
Confidence 7899999998865444 3455556899999999887555555
No 47
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=26.32 E-value=1.2e+02 Score=19.13 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=28.3
Q ss_pred cccCHHHH----HHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHh
Q 034805 19 KFVTEEEL----KARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (82)
Q Consensus 19 qflT~~El----l~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt 66 (82)
.|=|.+|| +++||.-|+.+ .|..=.|+.+.|++|.-+
T Consensus 5 ~f~sa~eLe~lGldrLK~~L~a~-----------GLKcGGTl~ERA~RLfs~ 45 (60)
T PF13297_consen 5 AFSSAEELEALGLDRLKSALMAL-----------GLKCGGTLQERAARLFSV 45 (60)
T ss_pred hcCCHHHHHHhCHHHHHHHHHHc-----------CCccCCCHHHHHHHHHHh
Confidence 45577777 57899999888 345558999999999754
No 48
>PRK04081 hypothetical protein; Provisional
Probab=25.47 E-value=1.1e+02 Score=23.67 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=24.5
Q ss_pred ceEEecCCCCccccCHHHHHHHHHHHHHhhh
Q 034805 8 TYVLLEPGVEEKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 8 ~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~ 38 (82)
+-||=+++-.|++||.+|+.+-+++--.+..
T Consensus 73 rvilr~~dG~ER~LS~eE~dkLi~eE~~KId 103 (207)
T PRK04081 73 RVVLRDLDGTERVLSQEEIDKLIKEEEAKID 103 (207)
T ss_pred eEEEecCCCcccccCHHHHHHHHHHHHHhhc
Confidence 3344566889999999999999988777664
No 49
>PF05201 GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal domain; InterPro: IPR015895 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the N-terminal domain of glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=25.22 E-value=25 Score=24.54 Aligned_cols=61 Identities=28% Similarity=0.304 Sum_probs=28.0
Q ss_pred eEEecC-CCCccccCHH---HHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccccc
Q 034805 9 YVLLEP-GVEEKFVTEE---ELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (82)
Q Consensus 9 yVvLEp-~~~EqflT~~---Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELE 71 (82)
.|+|-+ |.-|=++... .....+.++|....+ +..+.++..+.- -+-++++.||++-+|=||
T Consensus 39 ~viLsTCNR~Eiy~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-~~g~~a~~HLf~VasGLd 103 (152)
T PF05201_consen 39 AVILSTCNRVEIYVVSDDPEAGIDDVKEFLADFSG-VDPDELSEYLYV-YTGDEAVRHLFRVASGLD 103 (152)
T ss_dssp EEEEEETTEEEEEEES-TT-------HHHHH--------HTT-TT-EE-EEHHHHHHHHHHHHTTTT
T ss_pred EEEeecCCeEEEEEEeCcchhhHHHHHHHHHhhcc-cchhhhhcceEE-EcChHHHHHHHHHHhcch
Confidence 344443 4444444333 334556666666532 122344555443 446999999999999776
No 50
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=25.21 E-value=64 Score=24.92 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=51.5
Q ss_pred EecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhh-ccCCHHHHHHHHHHhcccccccCC
Q 034805 11 LLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLA-KFATIDEAVAFLITNVCELELQGD 75 (82)
Q Consensus 11 vLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~-k~~s~~~qa~~Lldt~CELEi~pg 75 (82)
|+-+.....++|++.|..-+++-|...-|.+..-+||.-|. .+..++.+|+.++..-..+-+-.|
T Consensus 41 li~T~dGkeyiT~~~L~~EI~~el~~~gGRv~~~dL~~~LnVd~~~ie~~~~~i~~~~~~~~l~~g 106 (272)
T PF09743_consen 41 LIHTTDGKEYITPEQLEKEIKDELYVHGGRVNLVDLAQALNVDLDHIERRAQEIVKSDKSLQLVQG 106 (272)
T ss_pred EEEECCCCEEECHHHHHHHHHHHHHHcCCceEHHHHHHhcCcCHHHHHHHHHHHHhCCCcEEEECC
Confidence 55566678999999999999999888777666666776554 466788999999998887777666
No 51
>PF12939 DUF3837: Domain of unknown function (DUF3837); InterPro: IPR024212 This entry represents a small, compact all-alpha helical domain of unknown function. This domain is currently only found in Clostridiales species.
Probab=25.12 E-value=99 Score=21.32 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=28.8
Q ss_pred CCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccccc
Q 034805 16 VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (82)
Q Consensus 16 ~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELE 71 (82)
.||.--|+-||++.|...+.+. ++-+++.++|+-=-|++.
T Consensus 42 ~pe~~~~~~eLk~~l~~~~~~~----------------~p~de~~k~l~~lL~~y~ 81 (102)
T PF12939_consen 42 IPEGDETPFELKEKLQKDIDKI----------------SPEDEREKKLISLLKDYI 81 (102)
T ss_pred CcccccCHHHHHHHHHHhccCC----------------CCchHHHHHHHHHHHhcC
Confidence 4566778888888887766655 455778888877777766
No 52
>PRK10853 putative reductase; Provisional
Probab=24.96 E-value=1.9e+02 Score=19.35 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=28.1
Q ss_pred ccccCHHHHHHHHHH-----HHHhhhccCCCCCCChhh-hccCCHHHHHHHHHHh
Q 034805 18 EKFVTEEELKARLKY-----WLENWAGQVGKGGLPPDL-AKFATIDEAVAFLITN 66 (82)
Q Consensus 18 EqflT~~Ell~~Lk~-----~L~~~~~~~~~~~LP~dL-~k~~s~~~qa~~Lldt 66 (82)
++-+|.+||..||+. ++.+.. ..+..|..+. ...+|.+++++-|+++
T Consensus 34 k~p~s~~eL~~~l~~~g~~~l~n~~~--~~~r~L~~~~k~~~~~~~e~~~ll~~~ 86 (118)
T PRK10853 34 VDGLDSELLQGFIDELGWEALLNTRG--TTWRKLDETQRNAITDAASAAALMLEQ 86 (118)
T ss_pred cCCcCHHHHHHHHHHcCHHHHHhcCC--chHHhCCHhHhhcCCCHHHHHHHHHhC
Confidence 567899999999963 333331 1223455554 2455667777776654
No 53
>PRK04542 elongation factor P; Provisional
Probab=24.69 E-value=58 Score=24.18 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=24.0
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (82)
+|.+.++||++.+..=||+-=+.+++..=..||.
T Consensus 75 lY~dg~~~~FMd~etyEQ~~i~~~~lgd~~~~L~ 108 (189)
T PRK04542 75 SYIDGDEYVFMDNEDYTPYTFKKDQIEDELLFIP 108 (189)
T ss_pred EEeCCCEEEEecCCCceEEEECHHHhhhHhhhhh
Confidence 5877899999999888999444455544444443
No 54
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=24.43 E-value=37 Score=19.15 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=14.2
Q ss_pred cccCHHHHHHHHHHHHHhh
Q 034805 19 KFVTEEELKARLKYWLENW 37 (82)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~ 37 (82)
-++|.+|+...++......
T Consensus 15 G~i~~~el~~~~~~~~~~~ 33 (66)
T PF13499_consen 15 GYISKEELRRALKHLGRDM 33 (66)
T ss_dssp SEEEHHHHHHHHHHTTSHS
T ss_pred CCCCHHHHHHHHHHhcccc
Confidence 4688899888888776544
No 55
>PTZ00224 protein phosphatase 2C; Provisional
Probab=24.00 E-value=2.6e+02 Score=22.50 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=33.4
Q ss_pred CceEEecCC-CCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccc
Q 034805 7 ETYVLLEPG-VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 70 (82)
Q Consensus 7 D~yVvLEp~-~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CEL 70 (82)
+.|+||-.+ --+..+|.+|+.+-++..+++. .+.+++|+.|++.+++-
T Consensus 209 ~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~----------------~~~~~aA~~Lv~~A~~r 257 (381)
T PTZ00224 209 NDFIILACDGVFEGNFSNEEVVAFVKEQLETC----------------DDLAVVAGRVCDEAIRR 257 (381)
T ss_pred CCEEEEECCCcCcCccCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHhc
Confidence 346666664 4455899999877776554332 35678999999988664
No 56
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.98 E-value=75 Score=20.60 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCccccCHHHHHHHHHHHHHhhh
Q 034805 15 GVEEKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 15 ~~~EqflT~~Ell~~Lk~~L~~~~ 38 (82)
|+.=.--|++||+++++..+.+-|
T Consensus 53 G~~V~A~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 53 GEIVAAETAEELLEKIKEKIEENP 76 (78)
T ss_pred CEEEecCCHHHHHHHHHHHHhccc
Confidence 444555699999999999988764
No 57
>PRK12426 elongation factor P; Provisional
Probab=23.92 E-value=58 Score=24.12 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=23.6
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWL 34 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L 34 (82)
+|.+.|+||+|.+..=||+-=+.+++..=..||
T Consensus 73 lY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL 105 (185)
T PRK12426 73 LYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFL 105 (185)
T ss_pred EEECCCeEEEecCCCceEEEeCHHHhhhHHhhc
Confidence 687889999999999999944444554334444
No 58
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.86 E-value=57 Score=24.08 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.1
Q ss_pred CCccccCHHHHHHHHH
Q 034805 16 VEEKFVTEEELKARLK 31 (82)
Q Consensus 16 ~~EqflT~~Ell~~Lk 31 (82)
.+|+++||++.+.+.+
T Consensus 97 EDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 97 EDEQPITPESFKERMA 112 (156)
T ss_pred ccCCccCHHHHHHHhh
Confidence 6899999999998865
No 59
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=23.80 E-value=1.2e+02 Score=25.29 Aligned_cols=35 Identities=9% Similarity=0.293 Sum_probs=30.3
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHh-hhc
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLEN-WAG 39 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~-~~~ 39 (82)
..|.|+||-.+-==++||.+|...-..+++.+ .|+
T Consensus 328 p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd 363 (390)
T KOG0700|consen 328 PNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPD 363 (390)
T ss_pred CCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCC
Confidence 46999999999989999999999988888887 443
No 60
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=23.55 E-value=1.1e+02 Score=19.17 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=17.1
Q ss_pred cCceEEecCCCCccccCHHHHHHH
Q 034805 6 TETYVLLEPGVEEKFVTEEELKAR 29 (82)
Q Consensus 6 ~D~yVvLEp~~~EqflT~~Ell~~ 29 (82)
.+.+++..|+...+.+|.+|+.+.
T Consensus 94 ~~~~~i~dp~~~~~~~s~~el~~~ 117 (125)
T cd02420 94 KRKVFLNDPATGRRTVSLEEFDQS 117 (125)
T ss_pred CCEEEEECCCcCceeecHHHHHhh
Confidence 455667788776778888887654
No 61
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.
Probab=22.94 E-value=9.9 Score=22.47 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=22.1
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWL 34 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L 34 (82)
+|.+.|+||++.+..=||+-=+.+.+..-..||
T Consensus 7 lY~dgd~~~FMd~etyeQi~v~~~~~g~~~~~L 39 (55)
T PF01132_consen 7 LYKDGDNYVFMDTETYEQIEVPKDQLGDALKFL 39 (55)
T ss_dssp EEEESSEEEEEETTT--EEEEEHHHHTTTGCC-
T ss_pred EEeCCCEEEEecCCCceEEEecHHHhChHHhhC
Confidence 577889999999999898866666654433333
No 62
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.89 E-value=1.2e+02 Score=17.48 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChh
Q 034805 24 EELKARLKYWLENWAGQVGKGGLPPD 49 (82)
Q Consensus 24 ~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (82)
+|.+.+|..++++... +++|-|
T Consensus 2 Ee~~~~Le~Iv~~Le~----~~~sLd 23 (53)
T PF02609_consen 2 EEAMERLEEIVEKLES----GELSLD 23 (53)
T ss_dssp HHHHHHHHHHHHHHHT----T-S-HH
T ss_pred HHHHHHHHHHHHHHHc----CCCCHH
Confidence 6788999999999986 377753
No 63
>PRK12449 acyl carrier protein; Provisional
Probab=22.72 E-value=1e+02 Score=18.47 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=12.1
Q ss_pred cCHHHHHHHHHHHHHhh
Q 034805 21 VTEEELKARLKYWLENW 37 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~ 37 (82)
+|.+++.+|++.+++..
T Consensus 1 m~~~~i~~~l~~il~~~ 17 (80)
T PRK12449 1 MTREEIFERLINLIQKQ 17 (80)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35677777877777764
No 64
>PRK00529 elongation factor P; Validated
Probab=22.41 E-value=74 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=21.8
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHH
Q 034805 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWL 34 (82)
Q Consensus 2 my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L 34 (82)
+|.+.|+|++|.+..-||+-=+.+.+..-..||
T Consensus 73 ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L 105 (186)
T PRK00529 73 LYNDGDGYVFMDTETYEQIEVPADQVGDAAKFL 105 (186)
T ss_pred EEECCCEEEEecCCCceeeEcCHHHhHHHHhhc
Confidence 576778999999877788744444444334444
No 65
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=22.26 E-value=96 Score=23.55 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=35.2
Q ss_pred ceEEecC-CCCccccCHH---HHHHHHHHHHHhhhccCCCCCCChhh---hccCCHHHHHHHHHHhccccc
Q 034805 8 TYVLLEP-GVEEKFVTEE---ELKARLKYWLENWAGQVGKGGLPPDL---AKFATIDEAVAFLITNVCELE 71 (82)
Q Consensus 8 ~yVvLEp-~~~EqflT~~---Ell~~Lk~~L~~~~~~~~~~~LP~dL---~k~~s~~~qa~~Lldt~CELE 71 (82)
..|+|-+ |.-|=.+... .....+.+||....+ +| ++ ..+..-++++.||+.-+|=||
T Consensus 41 e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~------~~-~~~~~~~~~~~~~a~~HLf~Va~GLd 104 (311)
T cd05213 41 EAVLLSTCNRVELYLVGDNFHKLADELEELLAELLN------EP-ELREYLYVGRGQDAVRHLFRVASGLD 104 (311)
T ss_pred eEEEEecCCeEEEEEEeCCcchhHHHHHHHHHHhcC------ch-HhhhhheeecCHHHHHHHHHHHhhhh
Confidence 4556655 5555554322 234567778877643 44 33 223445799999999999876
No 66
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=22.02 E-value=1.2e+02 Score=18.78 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=24.6
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCCh-hhhccCCHHHHH
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLPP-DLAKFATIDEAV 60 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~-dL~k~~s~~~qa 60 (82)
.=|++....||.-..... +||+ ++.+|. ..-++
T Consensus 4 ~Ws~~~V~~WL~w~~~ef-------~L~~~~~~~F~-m~Gk~ 37 (66)
T cd08536 4 SWSREHVRTWLRWVSARY-------QLEVVDLDKFL-MNGKG 37 (66)
T ss_pred cCCHHHHHHHHHHHHHHh-------CCCCCCccccC-CCHHH
Confidence 348899999999999988 5766 788874 34333
No 67
>cd02423 Peptidase_C39G A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=22.01 E-value=1.2e+02 Score=18.87 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=18.0
Q ss_pred cCceEEecCCCCccccCHHHHHHHH
Q 034805 6 TETYVLLEPGVEEKFVTEEELKARL 30 (82)
Q Consensus 6 ~D~yVvLEp~~~EqflT~~Ell~~L 30 (82)
.+.+++..|+.+.+-+|.+|+.+..
T Consensus 98 ~~~~~i~dp~~~~~~~s~~el~~~w 122 (129)
T cd02423 98 GDRVLVGDPALGNISMSREEFERIW 122 (129)
T ss_pred CCEEEEECCCCCCcccCHHHHHHHh
Confidence 4556667788877788888877643
No 68
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=21.57 E-value=2.7e+02 Score=18.91 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=33.8
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHH
Q 034805 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLI 64 (82)
Q Consensus 7 D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Ll 64 (82)
+..+.++|-..-+++|.+|+..+|+..... . .+.++.-+-.|..+-..+++
T Consensus 101 ~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~-~------~~~~~~l~p~s~~eil~R~l 151 (152)
T PF13369_consen 101 DGEFYIDPFNGGRLLSREELERLLSRMGGP-A------ELDPEYLKPASPREILLRML 151 (152)
T ss_pred CCcEEEccCCCCccCCHHHHHHHHHhccCc-c------cCCHHHhCCCCHHHHHHHHh
Confidence 445889998877999999998888776544 1 24444444455555555543
No 69
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.45 E-value=1.4e+02 Score=23.43 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
..+..+++++++..+ .||..|+.+.=-++....+.+.++.
T Consensus 320 a~~~i~~i~~l~~~l-------glP~~L~e~gv~~~~~~~ia~~a~~ 359 (383)
T PRK09860 320 AEACINAIRELAKKV-------DIPAGLRDLNVKEEDFAVLATNALK 359 (383)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHHh
Confidence 356788899999988 7998888876555666677766553
No 70
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=20.83 E-value=1.9e+02 Score=17.20 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChhhh
Q 034805 22 TEEELKARLKYWLENWAGQVGKGGLPPDLA 51 (82)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 51 (82)
|.+|++..++.-...--+ .+.+|+++.
T Consensus 21 tedEll~~~~~Ha~~~Hg---~~~~~~el~ 47 (57)
T PF06348_consen 21 TEDELLEAVVEHAREVHG---MTEIPEELR 47 (57)
T ss_pred CHHHHHHHHHHHHHHhcC---CccCCHHHH
Confidence 678999999998887754 367888764
No 71
>PRK13669 hypothetical protein; Provisional
Probab=20.71 E-value=1e+02 Score=20.24 Aligned_cols=25 Identities=28% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCCCccccCHHHHHHHHHHHHHhhh
Q 034805 14 PGVEEKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 14 p~~~EqflT~~Ell~~Lk~~L~~~~ 38 (82)
-|+.-.--|++||+++++..|...|
T Consensus 52 ng~~V~a~t~eeL~~kI~~~i~e~~ 76 (78)
T PRK13669 52 NGEVVEGETPEELVENIYAHLEENP 76 (78)
T ss_pred CCeEeecCCHHHHHHHHHHHHhhcC
Confidence 4555666799999999999988753
No 72
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.69 E-value=68 Score=22.13 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=28.9
Q ss_pred CCCCccccCH-HHHHHHHHHH--HHhhhccCCCCCCChhhhccCCHHHHHHHH
Q 034805 14 PGVEEKFVTE-EELKARLKYW--LENWAGQVGKGGLPPDLAKFATIDEAVAFL 63 (82)
Q Consensus 14 p~~~EqflT~-~Ell~~Lk~~--L~~~~~~~~~~~LP~dL~k~~s~~~qa~~L 63 (82)
|++|++|+.. .+|=+-++.+ |++.| +|=+.+.++..+..-+.-|
T Consensus 50 ~ddP~KFmdSE~dLd~~Ik~l~~La~~P------~LYp~lv~l~~v~sL~~LL 96 (108)
T PF08216_consen 50 PDDPEKFMDSEVDLDEEIKKLSVLATAP------ELYPELVELGAVPSLLGLL 96 (108)
T ss_pred CCCHHHHHHhHHHHHHHHHHHHHccCCh------hHHHHHHHcCCHHHHHHHH
Confidence 7899999954 4555555544 55555 4667777777776655544
No 73
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=20.56 E-value=86 Score=20.96 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.4
Q ss_pred cccCHHHHHHHHHHHHHhh
Q 034805 19 KFVTEEELKARLKYWLENW 37 (82)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~ 37 (82)
+|+|++|..+|+-+|-..-
T Consensus 61 r~v~heEv~a~i~~~~tk~ 79 (83)
T COG3905 61 RFVTHEEVIAWIDSWGTKN 79 (83)
T ss_pred CcCCHHHHHHHHHhhcCcc
Confidence 6999999999988875443
No 74
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=20.47 E-value=1.5e+02 Score=22.93 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcc
Q 034805 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (82)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~C 68 (82)
.++..+++++|+.+. .+|..|+.+.=-++....+.+.++
T Consensus 310 ~~~~~~~i~~l~~~l-------glp~~L~e~gv~~~~~~~~a~~a~ 348 (370)
T cd08192 310 FADFADAILALNARL-------GIPHTLRELGVDEDDLDRIAEKAL 348 (370)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 467889999999998 799888777645555666666554
No 75
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=20.38 E-value=1.6e+02 Score=16.76 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=15.8
Q ss_pred cCCCCccccCHHHHHHHHHHH
Q 034805 13 EPGVEEKFVTEEELKARLKYW 33 (82)
Q Consensus 13 Ep~~~EqflT~~Ell~~Lk~~ 33 (82)
.|..|..+-|++||...++++
T Consensus 4 ~P~~Pg~~a~~e~l~~Y~~~L 24 (36)
T smart00309 4 KPERPGDDASPEDLRQYLAAL 24 (36)
T ss_pred CCCCCCCCCCHHHHHHHHHHH
Confidence 577888899999976666543
No 76
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=20.33 E-value=1.4e+02 Score=19.67 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChhhh
Q 034805 22 TEEELKARLKYWLENWAGQVGKGGLPPDLA 51 (82)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 51 (82)
|++|+++-+|.-.+.- .||+.++
T Consensus 10 ~Eqells~IkkeveaG-------kLP~~va 32 (77)
T PF14829_consen 10 SEQELLSGIKKEVEAG-------KLPANVA 32 (77)
T ss_dssp SHHHHHHHHHHHHHTT-------SS-HHHH
T ss_pred cHHHHHHHHHHHHHcC-------CCChhHH
Confidence 7889999998877654 7998764
No 77
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.31 E-value=94 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=17.7
Q ss_pred ccccCceEEecCCCCccccCHHHHHHHHHHHHHh
Q 034805 3 YSRTETYVLLEPGVEEKFVTEEELKARLKYWLEN 36 (82)
Q Consensus 3 y~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~ 36 (82)
| ++|.||++ +.+||++|+. .|+..+..
T Consensus 25 f-~~dGyvvl-----~~vls~eev~-~lr~~i~~ 51 (277)
T TIGR02408 25 Y-ERDGFLLL-----ENLFSDDEVA-ALLAEVER 51 (277)
T ss_pred H-HHCCEEEC-----cccCCHHHHH-HHHHHHHH
Confidence 5 78999998 4678876643 34444433
No 78
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=20.19 E-value=48 Score=20.36 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChhhhccC
Q 034805 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFA 54 (82)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 54 (82)
+.++.+.||..|+... ..|++-||+=
T Consensus 18 ~~~Tv~~lK~~i~~~t------gvp~~~QKLi 43 (74)
T cd01813 18 SEDTVLDLKQFIKTLT------GVLPERQKLL 43 (74)
T ss_pred CCCCHHHHHHHHHHHH------CCCHHHEEEE
Confidence 4467778888888885 4899888775
No 79
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=20.07 E-value=95 Score=21.43 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=16.2
Q ss_pred CccccCceEEecCCCCccc
Q 034805 2 AYSRTETYVLLEPGVEEKF 20 (82)
Q Consensus 2 my~q~D~yVvLEp~~~Eqf 20 (82)
+|.+.|.|++|.+..-||+
T Consensus 79 lY~dg~~~~fMd~etyeq~ 97 (130)
T TIGR00037 79 LAIMGGMVQLMDLDTYETD 97 (130)
T ss_pred EEecCCEEEEEcCCCcEEE
Confidence 5767789999999888887
Done!