Query 034805
Match_columns 82
No_of_seqs 55 out of 57
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2krx_A ASL3597 protein; struct 100.0 3.1E-40 1.1E-44 221.2 8.1 75 1-81 5-79 (94)
2 2k0m_A Uncharacterized protein 62.9 5.8 0.0002 26.0 2.8 58 16-80 10-67 (104)
3 3ddc_B RAS association domain- 60.3 4.8 0.00016 28.7 2.2 24 15-38 1-24 (163)
4 1wy1_A Hypothetical protein PH 58.0 14 0.00048 25.8 4.3 40 21-68 79-122 (172)
5 2l6a_A Nacht, LRR and PYD doma 52.8 29 0.001 22.1 4.9 48 20-69 21-68 (102)
6 2hm2_Q ASC2, pyrin-only protei 52.4 26 0.00089 21.4 4.4 49 20-69 14-62 (89)
7 1ucp_A Pycard, ASC, apoptosis- 49.3 29 0.001 21.3 4.3 48 21-69 15-62 (91)
8 3skq_A Mitochondrial distribut 47.1 19 0.00065 27.0 3.7 29 19-51 164-192 (249)
9 3cpf_A Eukaryotic translation 45.2 19 0.00064 24.0 3.1 35 2-36 79-116 (138)
10 2hp0_A IDS-epimerase; MMGE/PRP 44.4 20 0.00069 28.1 3.6 45 14-76 417-461 (466)
11 1vp7_A Exodeoxyribonuclease VI 44.3 31 0.0011 22.5 4.0 33 13-49 22-54 (100)
12 1w1n_A Phosphatidylinositol 3- 39.8 6.2 0.00021 21.0 0.0 17 55-71 4-20 (33)
13 2zhy_A ATP:COB(I)alamin adenos 39.5 32 0.0011 24.1 3.8 42 20-68 83-128 (183)
14 2g2d_A ATP:cobalamin adenosylt 38.2 42 0.0014 23.7 4.2 41 21-68 92-136 (193)
15 3ke4_A Hypothetical cytosolic 35.2 30 0.001 25.2 3.0 41 21-68 104-148 (213)
16 2dlx_A UBX domain-containing p 34.0 79 0.0027 20.7 4.8 33 7-39 103-140 (153)
17 1wvt_A Hypothetical protein ST 32.3 47 0.0016 23.1 3.6 41 21-68 75-119 (172)
18 2kn6_A Apoptosis-associated sp 30.5 1.2E+02 0.0041 21.6 5.6 48 21-69 35-82 (215)
19 2idx_A COB(I)yrinic acid A,C-d 29.4 42 0.0014 23.8 3.0 39 24-68 93-135 (196)
20 2p8e_A PPM1B beta isoform vari 29.2 40 0.0014 23.9 2.9 47 7-69 237-283 (307)
21 3ci3_A Cobalamin adenosyltrans 29.0 45 0.0015 23.6 3.1 41 21-68 93-137 (194)
22 1pn5_A Nacht-, LRR- and PYD-co 28.3 1.1E+02 0.0036 21.4 4.9 48 21-69 74-121 (159)
23 2dml_A Protein disulfide-isome 27.7 94 0.0032 18.0 4.2 32 7-38 91-127 (130)
24 2ah6_A BH1595, unknown conserv 27.7 48 0.0016 23.9 3.0 41 21-68 98-142 (208)
25 2nt8_A Cobalamin adenosyltrans 27.6 48 0.0016 24.1 3.1 41 21-68 122-166 (223)
26 1rty_A YVQK protein; all alpha 27.5 49 0.0017 23.4 3.0 41 21-68 85-129 (193)
27 2qjz_A Microtubule-associated 27.3 40 0.0014 22.3 2.4 18 19-36 3-20 (123)
28 2drn_C 24-residues peptide fro 27.1 39 0.0013 17.5 1.8 16 54-69 1-16 (26)
29 2opw_A Phyhd1 protein; double- 26.2 42 0.0014 23.2 2.5 20 5-29 13-32 (291)
30 3g2f_A Bone morphogenetic prot 24.9 47 0.0016 22.5 2.5 24 17-40 300-323 (336)
31 3hks_A EIF-5A-2, eukaryotic tr 24.1 50 0.0017 23.0 2.5 35 2-36 101-140 (167)
32 2i0o_A Ser/Thr phosphatase; be 24.1 59 0.002 22.9 3.0 50 6-70 235-284 (304)
33 2fct_A Syringomycin biosynthes 24.0 48 0.0017 23.2 2.5 27 5-36 19-45 (313)
34 3dml_A Putative uncharacterize 23.9 72 0.0025 20.4 3.2 32 7-38 78-113 (116)
35 1nog_A Conserved hypothetical 23.2 49 0.0017 23.1 2.4 41 21-68 78-122 (177)
36 2afd_A Protein ASL1650; twiste 22.9 78 0.0027 17.5 2.9 18 48-65 68-85 (88)
37 2a1x_A Phytanoyl-COA dioxygena 22.7 46 0.0016 23.3 2.1 22 5-31 32-53 (308)
38 2rdq_A 1-deoxypentalenic acid 22.2 49 0.0017 22.7 2.2 26 5-35 29-57 (288)
39 2kwl_A ACP, acyl carrier prote 21.6 1.1E+02 0.0039 17.1 3.4 17 21-37 5-21 (84)
40 3lhr_A Zinc finger protein 24; 21.4 16 0.00056 23.3 -0.4 8 21-28 43-50 (93)
41 2ehs_A ACP, acyl carrier prote 21.4 77 0.0026 17.1 2.6 38 22-66 37-74 (77)
42 1wyo_A Protein EB3, microtubul 21.3 50 0.0017 23.0 2.1 24 13-36 14-37 (159)
43 2ava_A ACP I, acyl carrier pro 21.1 1.1E+02 0.0038 16.9 3.3 37 21-65 39-76 (82)
44 3qf2_A Nacht, LRR and PYD doma 21.0 1.6E+02 0.0055 18.7 4.4 48 21-69 15-62 (110)
45 2pnq_A [pyruvate dehydrogenase 20.3 38 0.0013 26.3 1.4 32 6-37 338-369 (467)
46 1l0i_A Acyl carrier protein; a 20.3 82 0.0028 17.3 2.5 36 23-66 40-76 (78)
47 1sen_A Thioredoxin-like protei 20.1 1.7E+02 0.0059 18.4 4.5 20 20-39 133-152 (164)
No 1
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=100.00 E-value=3.1e-40 Score=221.24 Aligned_cols=75 Identities=31% Similarity=0.491 Sum_probs=72.5
Q ss_pred CCccccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccccccCCcceee
Q 034805 1 MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 80 (82)
Q Consensus 1 ~my~q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELEi~pg~~~lQ 80 (82)
.|| |+|||||||||+||||||++||++|||+||+++|+ ++||+||+||+|+++||+||++|+|||||+||+ |||
T Consensus 5 lmy-q~D~yVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~----~~LP~dL~~~~s~~~qaq~Lldt~CELei~pG~-~lQ 78 (94)
T 2krx_A 5 LMY-QQDNFVVLETNQPEQFLTTIELLEKLKGELEKISF----SDLPLELQKLDSLPAQAQHLIDTSCELDVGAGK-YLQ 78 (94)
T ss_dssp CSC-CCCCEEEEESSSCSEEECHHHHHHHHHHHHHHSCT----TTSCHHHHHCCCHHHHHHHHHHHCCCEEEETTE-EEE
T ss_pred hhc-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHhCcc----ccCCHHHHhCCCHHHHHHHHHHheeeeeeCCCC-EEE
Confidence 389 99999999999999999999999999999999995 499999999999999999999999999999995 999
Q ss_pred e
Q 034805 81 C 81 (82)
Q Consensus 81 W 81 (82)
|
T Consensus 79 W 79 (94)
T 2krx_A 79 W 79 (94)
T ss_dssp E
T ss_pred E
Confidence 9
No 2
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=62.95 E-value=5.8 Score=25.99 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=36.1
Q ss_pred CCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccccccCCcceee
Q 034805 16 VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 80 (82)
Q Consensus 16 ~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELEi~pg~~~lQ 80 (82)
-+..|=|..++.+.++++|.+++.+ +.|.++ ...-+.+..+| -.-++--||.|+.+++
T Consensus 10 G~~~F~s~~~~~~~~k~iL~~y~~g---~~l~~~--d~~~l~~lL~~--HP~~~~KiG~Gi~~i~ 67 (104)
T 2k0m_A 10 AGHEFARKADALAFMKVMLNRYRPG---DIVSTV--DGAFLVEALKR--HPDATSKIGPGVRNFE 67 (104)
T ss_dssp TTEEESSHHHHHHHHHHHHHHSCTT---EECCHH--HHHHHHHHHHT--STTHHHHHTTCEEEEE
T ss_pred CCEecCCHHHHHHHHHHHHHhCCCC---CccCHH--HHHHHHHHHHh--CCcHHHhcCCCcceEE
Confidence 3578999999999999999999853 344443 11112222222 2344556777765554
No 3
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=60.34 E-value=4.8 Score=28.65 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=16.9
Q ss_pred CCCccccCHHHHHHHHHHHHHhhh
Q 034805 15 GVEEKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 15 ~~~EqflT~~Ell~~Lk~~L~~~~ 38 (82)
|.||+-||.+|+.+|++++=++..
T Consensus 1 ~~~~~~ls~~ei~~kI~~YN~~~~ 24 (163)
T 3ddc_B 1 GSPEFPPTIQEIKQKIDSYNSREK 24 (163)
T ss_dssp -----CCCHHHHHHHHHHHHHTSC
T ss_pred CCccccCCHHHHHHHHHHHHHhcc
Confidence 679999999999999999877664
No 4
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=57.97 E-value=14 Score=25.75 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++ ++-.++|+.|+..+.. .+| |..| .|..+++-|+..|.|
T Consensus 79 i~-~~~v~~LE~~id~~~~-----~lp--l~~FILPgg~~~aA~Lh~aRtv~ 122 (172)
T 1wy1_A 79 IS-EERIKWLEGLISRYEE-----MVN--LKSFVLPGGTLESAKLDVCRTIA 122 (172)
T ss_dssp CC-HHHHHHHHHHHHHHHT-----TCS--CCSSCCSCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHhh-----hCC--CcCeEECCCCHHHHHHHHHHHHH
Confidence 44 4777999999999985 688 7777 588888889999988
No 5
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=52.83 E-value=29 Score=22.10 Aligned_cols=48 Identities=29% Similarity=0.348 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
-|+++|+. ++|..|.+ +-.-|+..+|..--+-.+..+-|..|+..+.+
T Consensus 21 ~L~~~Elk-kFK~~L~~-~l~~g~~~Ip~~~le~ad~~dLa~lLv~~y~e 68 (102)
T 2l6a_A 21 ELEAVELK-KFKLYLGT-ATELGEGKIPWGSMEKAGPLEMAQLLITHFGP 68 (102)
T ss_dssp TSCHHHHH-HHHHHHHS-CSTTTTCSSCSSTTTTCCHHHHHHHHHHHTCH
T ss_pred HcCHHHHH-HHHHHHcc-cccccCCCCChHHHhcCCHHHHHHHHHHHcCH
Confidence 47788876 77888887 54445667887766668888999999887754
No 6
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=52.39 E-value=26 Score=21.42 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
-|+++|+. ++|..|.+.+..-|+..+|..--.-.+..+=|..|+..+.+
T Consensus 14 ~L~~~Elk-~FK~~L~~~~~~~~~~~Ip~~~le~a~~~dla~lLv~~y~~ 62 (89)
T 2hm2_Q 14 NLTPEELK-KFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASYYE 62 (89)
T ss_dssp TSCHHHHH-HHHHHTTTSCCCTTCCCCCGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HcCHHHHH-HHHHHHccccccccCCCCChhhcccCCHHHHHHHHHHHcCH
Confidence 36777775 78889988765556667888777778899999988887754
No 7
>1ucp_A Pycard, ASC, apoptosis-associated speck-like protein containing A CARD; death domain fold; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=49.26 E-value=29 Score=21.34 Aligned_cols=48 Identities=25% Similarity=0.206 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
|+++|+. ++|..|.+.+..-|+..+|..--.-.+..+-|..|+..+.+
T Consensus 15 L~~~Elk-~FK~~L~~~~l~~g~~~Ip~~~le~a~~~dla~lLv~~y~~ 62 (91)
T 1ucp_A 15 LTAEELK-KFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLE 62 (91)
T ss_dssp SCHHHHH-HHHHHTTTSCCCSSSCCCCHHHHHHCCHHHHHHHHHHTSCH
T ss_pred cCHHHHH-HHHHHHhhccccccCCCCChhhcccCCHHHHHHHHHHHcCH
Confidence 6777765 78888988765556677888777778888899998887754
No 8
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=47.06 E-value=19 Score=27.01 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHHHHHhhhccCCCCCCChhhh
Q 034805 19 KFVTEEELKARLKYWLENWAGQVGKGGLPPDLA 51 (82)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 51 (82)
.-+|+++++.||+.||.=.-. ..+|.-|-
T Consensus 164 ~gls~e~LR~~L~~WL~Lsl~----~~vPssLL 192 (249)
T 3skq_A 164 YGVSKEDLVDNLKVWLELRLR----QKIPSVLM 192 (249)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT----SCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcc----CCCCHHHH
Confidence 348999999999999987754 37887663
No 9
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=45.16 E-value=19 Score=24.03 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=26.5
Q ss_pred CccccCceEEecCCCCcccc---CHHHHHHHHHHHHHh
Q 034805 2 AYSRTETYVLLEPGVEEKFV---TEEELKARLKYWLEN 36 (82)
Q Consensus 2 my~q~D~yVvLEp~~~Eqfl---T~~Ell~~Lk~~L~~ 36 (82)
+|.+.|.|++|.+.--||+= +++.+-..++.+|..
T Consensus 79 ly~dg~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~e 116 (138)
T 3cpf_A 79 IGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDC 116 (138)
T ss_dssp EEEETTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHH
T ss_pred EEecCCEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhC
Confidence 47788999999998888864 767666777666653
No 10
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium tumefaciens} PDB: 2hp3_A*
Probab=44.39 E-value=20 Score=28.11 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccccccCCc
Q 034805 14 PGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDV 76 (82)
Q Consensus 14 p~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CELEi~pg~ 76 (82)
.|.|+.-+|.+|+.+|++..+ . .+|. ++++.|++.+..||-.+++
T Consensus 417 ~G~p~~Pls~~~l~~KF~~~~-~--------~l~~---------~~~~~i~~~v~~le~~~dv 461 (466)
T 2hp0_A 417 PGSLEDPMDDAHLERKFKDCT-A--------WMPF---------GESGLLFDRLRSLTADQGI 461 (466)
T ss_dssp TTSTTSCCCHHHHHHHHHHHT-T--------TSCT---------THHHHHHHHHHTTTTTCBG
T ss_pred CCCCCCCCCHHHHHHHHHHhc-c--------cCCH---------HHHHHHHHHHhCcccCcch
Confidence 488999999999999999876 2 2544 3677888887777766654
No 11
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=44.34 E-value=31 Score=22.48 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.0
Q ss_pred cCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChh
Q 034805 13 EPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 49 (82)
Q Consensus 13 Ep~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (82)
.|+.+..-+|-+|.++.|..+++++.. +++|-+
T Consensus 22 ~~~~~~~~~sFEeal~eLEeIV~~LE~----gel~LE 54 (100)
T 1vp7_A 22 QTDARPLPQDFETALAELESLVSAMEN----GTLPLE 54 (100)
T ss_dssp ---CCCBCCSHHHHHHHHHHHHHHHHT----TCSCHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHc----CCCCHH
Confidence 456677789999999999999999986 378865
No 12
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=39.81 E-value=6.2 Score=21.01 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHhccccc
Q 034805 55 TIDEAVAFLITNVCELE 71 (82)
Q Consensus 55 s~~~qa~~Lldt~CELE 71 (82)
|+++|++.||..+-+.+
T Consensus 4 sv~~QV~~LI~~At~~~ 20 (33)
T 1w1n_A 4 DVPEQVDKLIQQATSIE 20 (33)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHH
Confidence 68899999998775543
No 13
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=39.55 E-value=32 Score=24.12 Aligned_cols=42 Identities=38% Similarity=0.722 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
-++ ++-.++|+.++..+.. .||| |..| .|..+++-|+..|.|
T Consensus 83 ~i~-~~~v~~LE~~id~~~~-----~l~p-l~~FILPgg~~~aA~Lh~aRtv~ 128 (183)
T 2zhy_A 83 AIT-DAHLARLDGWLAHYNG-----QLPP-LEEFILPGGARGAALAHVCRTVC 128 (183)
T ss_dssp CCC-HHHHHHHHHHHHHHHH-----TSCC-CCSCCBSCSSHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHh-----hCCC-CcceeeCCCCHHHHHHHHHHHHH
Confidence 355 4668899999998875 4655 5555 588888888888888
No 14
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=38.16 E-value=42 Score=23.70 Aligned_cols=41 Identities=24% Similarity=0.496 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
+++ +-.++|+.|+..+.. .||+ |..| .|..+++-|+..|+|
T Consensus 92 i~~-~~v~~LE~~id~~~~-----~l~p-l~~FILPGG~~~aA~LH~aRtv~ 136 (193)
T 2g2d_A 92 IAQ-SYIDRLEGWCDAYNA-----GLPA-LKSFVLPGGSPLSALLHVARTVV 136 (193)
T ss_dssp CCH-HHHHHHHHHHHHHHT-----TCCC-CSSCEESCSSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 554 558999999999986 5654 4555 588888889999988
No 15
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=35.23 E-value=30 Score=25.18 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++++ -.++|+.|+..+.. .||+ |..| .|..+++-++..|+|
T Consensus 104 i~~~-~v~~LE~~ID~~~~-----~lpp-l~~FILPGGs~~aA~LHvARTV~ 148 (213)
T 3ke4_A 104 VTIV-MVESLERKIDLYIE-----EAPP-LERFILPGGSEAAATIHIARTVV 148 (213)
T ss_dssp CCHH-HHHHHHHHHHHHHH-----HSCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHh-----cCCC-CCceEeCCCCHHHHHHHHHHHHH
Confidence 4544 45788888888864 4553 5454 578888888998888
No 16
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=34.02 E-value=79 Score=20.74 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=24.6
Q ss_pred CceEEecCCCCc-----cccCHHHHHHHHHHHHHhhhc
Q 034805 7 ETYVLLEPGVEE-----KFVTEEELKARLKYWLENWAG 39 (82)
Q Consensus 7 D~yVvLEp~~~E-----qflT~~Ell~~Lk~~L~~~~~ 39 (82)
-+++++.|+..+ .++++++++++|+..+.+...
T Consensus 103 P~~~fld~~~G~~l~~~~g~~~~~fl~~L~~~l~~~~~ 140 (153)
T 2dlx_A 103 PYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQ 140 (153)
T ss_dssp SEEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHTCS
T ss_pred CEEEEEeCCCCcEeeecCCCCHHHHHHHHHHHHHhcCC
Confidence 367888775221 248999999999999998853
No 17
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=32.26 E-value=47 Score=23.09 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
+++ +-.++|+.++..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 75 i~~-~~v~~LE~~id~~~~-----~l~p-l~~FILPgg~~~aA~Lh~aRtv~ 119 (172)
T 1wvt_A 75 FSD-EKVKGIEELITNYSK-----ELEP-LRNFVLPGGHIASSFLHLARAVC 119 (172)
T ss_dssp CCT-HHHHHHHHHHHHHHT-----TSCC-CCSCEESCSSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHh-----hCCC-CcceeeCCCCHHHHHHHHHHHHH
Confidence 444 558999999999985 5654 4444 588888889999888
No 18
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain modular protein structure, interdomain mobility, domain, inflammation; NMR {Homo sapiens}
Probab=30.52 E-value=1.2e+02 Score=21.55 Aligned_cols=48 Identities=25% Similarity=0.206 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
|+++|+. ++|..|.+.+-.-|+..+|..--+-.+..+-|..|+..+.+
T Consensus 35 L~~~Elk-kFK~~L~~~~l~~g~~~Ip~~~le~ad~~dla~lLv~~y~~ 82 (215)
T 2kn6_A 35 LTAEELK-KFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLE 82 (215)
T ss_dssp SCHHHHH-HHHHHHHHSCCSSCCCCCCHHHHHHSCHHHHHHHHHHHSCH
T ss_pred cCHHHHH-HHHHHHhhccccccCCCCChhhhhcCCHHHHHHHHHHHcCh
Confidence 6677765 78889988875567778998777778888888888887754
No 19
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=29.39 E-value=42 Score=23.75 Aligned_cols=39 Identities=23% Similarity=0.525 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 24 EELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 24 ~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++-.++|+.++..+.. .||+ |..| .|..+++-|+..|+|
T Consensus 93 ~~~v~~LE~~Id~~~~-----~lpp-l~~FILPGG~~~aA~LH~aRtv~ 135 (196)
T 2idx_A 93 AGPILELEQWIDKYTS-----QLPP-LTAFILPSGGKISSALHFCRAVC 135 (196)
T ss_dssp SHHHHHHHHHHHHHHH-----TSCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----hCCC-CCceEECCCCHHHHHHHHHHHHH
Confidence 3667899999998875 5663 5555 588888899999988
No 20
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=29.17 E-value=40 Score=23.86 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=33.1
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 7 D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
|.|+||-.+-==..||.+|+...++..+... .+.+++|+.|++.+.+
T Consensus 237 d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~----------------~~~~~~a~~Lv~~A~~ 283 (307)
T 2p8e_A 237 DEFIILACDGIWDVMSNEELCEYVKSRLEVS----------------DDLENVCNWVVDTCLH 283 (307)
T ss_dssp EEEEEEECHHHHTTSCHHHHHHHHHHHHTTC----------------CCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccCCCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHH
Confidence 4577776655455789999988877655322 4577889999988744
No 21
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=28.98 E-value=45 Score=23.63 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=29.9
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++ ++-.++|+.++..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 93 i~-~~~v~~LE~~id~~~~-----~l~p-l~~FILPGG~~~aA~LH~aRtv~ 137 (194)
T 3ci3_A 93 KQ-EQPTVWLEEKIDNYTQ-----VVPA-VKKFILPGGTQLASALHVARTIT 137 (194)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HSCC-CSSCBCSCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 45 4667889999988875 4544 3444 588888889998888
No 22
>1pn5_A Nacht-, LRR- and PYD-containing protein 2; alpha-helix bundle, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=28.33 E-value=1.1e+02 Score=21.43 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
|+++|+. ++|..|.+.+-.-|+..+|..--+-.+..+-|..|+..+.+
T Consensus 74 L~keELK-kFK~~L~~~~l~~g~~~IP~~eLEkAd~~dLAdLLV~~Yge 121 (159)
T 1pn5_A 74 LKKEELK-EFQLLLANKAHSRSSSGETPAQPEKTSGMEVASYLVAQYGE 121 (159)
T ss_dssp CCHHHHH-HHHHHHHHHCTTCCSSCSCSSCCCCCSHHHHHHHHHHHTCH
T ss_pred cCHHHHH-HHHHHhcccccccCCCCCChhhhhcCCHHHHHHHHHHHcCH
Confidence 5777764 67888888875556678888777778888889988887654
No 23
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.68 E-value=94 Score=18.01 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=23.4
Q ss_pred CceEEecCCCC-----ccccCHHHHHHHHHHHHHhhh
Q 034805 7 ETYVLLEPGVE-----EKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 7 D~yVvLEp~~~-----EqflT~~Ell~~Lk~~L~~~~ 38 (82)
-+++++.+|.. .-..+.+++.++|...+.+.+
T Consensus 91 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~~ 127 (130)
T 2dml_A 91 PTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127 (130)
T ss_dssp SEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred CEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence 46777777654 225689999999999887654
No 24
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=27.65 E-value=48 Score=23.87 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++ ++-.++|+.|+..+.. .||+ |..| .|..+++-++..|+|
T Consensus 98 i~-~~~v~~LE~~Id~~~~-----~l~p-l~~FILPGG~~~aA~LHvaRTv~ 142 (208)
T 2ah6_A 98 AK-QEIVDFLEQRIDAYIK-----EAPE-LERFILPGGSEAAASLHVCRTIA 142 (208)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HSCC-CCSCEESCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CcceeeCCCCHHHHHHHHHHHHH
Confidence 45 4667889999988875 4554 4444 588888888888888
No 25
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=27.62 E-value=48 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=30.3
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++ ++-.++|+.|+..+.. .||+ |..| .|..+++-++..|.|
T Consensus 122 i~-~~~v~~LE~~Id~~~~-----~lpp-l~~FILPGGs~~aA~LHvaRTv~ 166 (223)
T 2nt8_A 122 KQ-EQPTVWLEEKIDNYTQ-----VVPA-VKKFILPGGTQLASALHVARTIT 166 (223)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HSCC-CSSCEESCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CCceEeCCCCHHHHHHHHHHHHH
Confidence 45 4667889999998875 4554 4444 588888888888888
No 26
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=27.50 E-value=49 Score=23.42 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=29.9
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
+++ +-.++|+.++..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 85 i~~-~~v~~LE~~Id~~~~-----~l~p-l~~FILPGG~~~aA~LH~aRtv~ 129 (193)
T 1rty_A 85 LTE-ESVSFLETRIDAYTA-----EAPE-LKKFILPGGSKCASLLHIARTIT 129 (193)
T ss_dssp CCH-HHHHHHHHHHHHHHH-----HSCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 554 557889999988875 3543 3333 588888889999888
No 27
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=27.30 E-value=40 Score=22.33 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.7
Q ss_pred cccCHHHHHHHHHHHHHh
Q 034805 19 KFVTEEELKARLKYWLEN 36 (82)
Q Consensus 19 qflT~~Ell~~Lk~~L~~ 36 (82)
.++|..|+++|+.+.|..
T Consensus 3 ~~~sr~ElL~WIN~~L~~ 20 (123)
T 2qjz_A 3 DNLSRHDMLAWINESLQL 20 (123)
T ss_dssp CCCCHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHCC
Confidence 578999999999999854
No 28
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=27.09 E-value=39 Score=17.51 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHhccc
Q 034805 54 ATIDEAVAFLITNVCE 69 (82)
Q Consensus 54 ~s~~~qa~~Lldt~CE 69 (82)
+|++++|.+.+|.+-+
T Consensus 1 dsIEEaA~RIVdaVi~ 16 (26)
T 2drn_C 1 DLIEEAASRIVDAVIE 16 (26)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4899999999987643
No 29
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=26.20 E-value=42 Score=23.16 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.3
Q ss_pred ccCceEEecCCCCccccCHHHHHHH
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKAR 29 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~ 29 (82)
++|.|||++ .|+|++|+.+.
T Consensus 13 ~~dGyvvl~-----~~l~~e~v~~l 32 (291)
T 2opw_A 13 QQDGFLVLE-----GFLSAEECVAM 32 (291)
T ss_dssp HHHSEEEET-----TSSCHHHHHHH
T ss_pred HhCCEEEec-----CCCCHHHHHHH
Confidence 678999995 68888775543
No 30
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=24.86 E-value=47 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=18.1
Q ss_pred CccccCHHHHHHHHHHHHHhhhcc
Q 034805 17 EEKFVTEEELKARLKYWLENWAGQ 40 (82)
Q Consensus 17 ~EqflT~~Ell~~Lk~~L~~~~~~ 40 (82)
|++-.|.+|+++.|+.++..|..+
T Consensus 300 P~~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 300 AEARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp GGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred hhhCcchHHHHHHHHHHHHHHHhc
Confidence 455568888888888888888753
No 31
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=24.15 E-value=50 Score=23.03 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=25.8
Q ss_pred Ccccc-CceEEecCCCCccc---cCHH-HHHHHHHHHHHh
Q 034805 2 AYSRT-ETYVLLEPGVEEKF---VTEE-ELKARLKYWLEN 36 (82)
Q Consensus 2 my~q~-D~yVvLEp~~~Eqf---lT~~-Ell~~Lk~~L~~ 36 (82)
+|.+. +.|++|.+.--||+ |.++ +|-.+++.+|..
T Consensus 101 LY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~e 140 (167)
T 3hks_A 101 IDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDE 140 (167)
T ss_dssp EEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHT
T ss_pred EEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhC
Confidence 46423 68999999999995 6666 787888777753
No 32
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=24.14 E-value=59 Score=22.90 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=33.8
Q ss_pred cCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhcccc
Q 034805 6 TETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 70 (82)
Q Consensus 6 ~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CEL 70 (82)
.|.|+||-.+-==..|+.+|+...++..+... -.+.++.|+.|++.+..-
T Consensus 235 ~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~~---------------~~~~~~~a~~L~~~a~~~ 284 (304)
T 2i0o_A 235 EDEFMVLACDGIWNFMTSEQVVQFVQERINKP---------------GMKLSKICEELFDHCLAP 284 (304)
T ss_dssp TEEEEEEECHHHHTTCCHHHHHHHHHHHHTST---------------TCCHHHHHHHHHHHHC--
T ss_pred CCeEEEEECcCccccCCHHHHHHHHHHHHhhc---------------CCCHHHHHHHHHHHHHHh
Confidence 45677776654445789999888877665431 146788899999887653
No 33
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=23.95 E-value=48 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=19.4
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHh
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLEN 36 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~ 36 (82)
++|.|||++ .+++++++.+..+.+...
T Consensus 19 ~~dGyvvl~-----~~l~~e~v~~l~~~~~~~ 45 (313)
T 2fct_A 19 EKNGFIGPF-----DAYSPEEMKETWKRTRLR 45 (313)
T ss_dssp HHHSEEEEE-----ESSCHHHHHHHHHHHHHH
T ss_pred HhCCEEECC-----CCCCHHHHHHHHHHHHHH
Confidence 678999994 689988876655554443
No 34
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=23.95 E-value=72 Score=20.38 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=25.1
Q ss_pred CceEEecCCCC----ccccCHHHHHHHHHHHHHhhh
Q 034805 7 ETYVLLEPGVE----EKFVTEEELKARLKYWLENWA 38 (82)
Q Consensus 7 D~yVvLEp~~~----EqflT~~Ell~~Lk~~L~~~~ 38 (82)
-++|++.-|++ +=++++++++.||...+.+.+
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~~~ 113 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQAE 113 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhhcC
Confidence 47888885543 238899999999999998874
No 35
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=23.18 E-value=49 Score=23.08 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhcc----CCHHHHHHHHHHhcc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qa~~Lldt~C 68 (82)
++ ++-.++|+.++..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 78 i~-~~~v~~LE~~id~~~~-----~l~~-l~~FILPGg~~~aA~LH~aRtv~ 122 (177)
T 1nog_A 78 VT-REMIDYLEARVKEMKA-----EIGK-IELFVVPGGSVESASLHMARAVS 122 (177)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HHCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 45 3667888888887764 3433 3333 588888889988888
No 36
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=22.92 E-value=78 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=10.2
Q ss_pred hhhhccCCHHHHHHHHHH
Q 034805 48 PDLAKFATIDEAVAFLIT 65 (82)
Q Consensus 48 ~dL~k~~s~~~qa~~Lld 65 (82)
.++-+.+|+.+-|.++..
T Consensus 68 ~~~~~~~ti~~la~~l~~ 85 (88)
T 2afd_A 68 VLIFNYPTIAQLAKRLGE 85 (88)
T ss_dssp GGTTTCCSHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 445555666666666543
No 37
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=22.70 E-value=46 Score=23.31 Aligned_cols=22 Identities=5% Similarity=0.359 Sum_probs=16.2
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHH
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKARLK 31 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~~Lk 31 (82)
++|.|||++ .|+|++++.+..+
T Consensus 32 ~~dGyvvl~-----~~l~~e~v~~l~~ 53 (308)
T 2a1x_A 32 EENGFLVIK-----NLVPDADIQRFRN 53 (308)
T ss_dssp HHHSEEEET-----TCSCHHHHHHHHH
T ss_pred HhCCEEEcc-----CCCCHHHHHHHHH
Confidence 678999995 6899887655433
No 38
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=22.24 E-value=49 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=17.4
Q ss_pred ccCceEEecCCCCccccCHHHHHH---HHHHHHH
Q 034805 5 RTETYVLLEPGVEEKFVTEEELKA---RLKYWLE 35 (82)
Q Consensus 5 q~D~yVvLEp~~~EqflT~~Ell~---~Lk~~L~ 35 (82)
++|.|||++ .+++++++.+ .+..++.
T Consensus 29 ~~dGyvvl~-----~~l~~e~v~~l~~~~~~~~~ 57 (288)
T 2rdq_A 29 EEHGYLFLR-----NVLDRDLVKTVAEQMREGLV 57 (288)
T ss_dssp HHHSEEEEC-----SCSCHHHHHHHHHHHHHHHH
T ss_pred HhCCEEEEe-----CCCCHHHHHHHHHHHHHHHH
Confidence 678999995 5888876543 3444444
No 39
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=21.63 E-value=1.1e+02 Score=17.05 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=10.8
Q ss_pred cCHHHHHHHHHHHHHhh
Q 034805 21 VTEEELKARLKYWLENW 37 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~ 37 (82)
+|.+++.++++.+++..
T Consensus 5 m~~~~i~~~l~~~i~~~ 21 (84)
T 2kwl_A 5 MDNDEIFSKVRSIISEQ 21 (84)
T ss_dssp STHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56666666666666654
No 40
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=21.41 E-value=16 Score=23.33 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=4.2
Q ss_pred cCHHHHHH
Q 034805 21 VTEEELKA 28 (82)
Q Consensus 21 lT~~Ell~ 28 (82)
=|++++++
T Consensus 43 htKEQile 50 (93)
T 3lhr_A 43 HTKEQILE 50 (93)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 45565543
No 41
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=21.40 E-value=77 Score=17.10 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHh
Q 034805 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (82)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt 66 (82)
...++..+|+..+.- .--+.++.+++|+.+-++++...
T Consensus 37 ~~~~l~~~le~~~gi-------~i~~~~~~~~~tv~~l~~~i~~~ 74 (77)
T 2ehs_A 37 DVVELIMAFEEEFGI-------EIPDEDAEKIQTVGDVINYLKEK 74 (77)
T ss_dssp HHHHHHHHHHHHHTC-------CCCHHHHHTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-------ccCHHHHHHcCCHHHHHHHHHHH
Confidence 445566666555421 12345678999999999888654
No 42
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.31 E-value=50 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=19.2
Q ss_pred cCCCCccccCHHHHHHHHHHHHHh
Q 034805 13 EPGVEEKFVTEEELKARLKYWLEN 36 (82)
Q Consensus 13 Ep~~~EqflT~~Ell~~Lk~~L~~ 36 (82)
-+...-.+.+..|+++|+.+.|..
T Consensus 14 ~t~~~~~~~sr~ElL~WIN~~L~~ 37 (159)
T 1wyo_A 14 STSVTSENLSRHDMLAWVNDSLHL 37 (159)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHSCC
T ss_pred eccCCCCchhHHHHHHHHHHHHCC
Confidence 345567889999999999988843
No 43
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=21.14 E-value=1.1e+02 Score=16.94 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=23.8
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCC-hhhhccCCHHHHHHHHHH
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLP-PDLAKFATIDEAVAFLIT 65 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP-~dL~k~~s~~~qa~~Lld 65 (82)
|..-|+..+|+..+. . .+| .++.++.|+.+-+.++..
T Consensus 39 l~~vel~~~le~~fg-i-------~i~~~~~~~~~Tv~~l~~~i~~ 76 (82)
T 2ava_A 39 LDTVEIVMNLEEEFG-I-------NVDEDKAQDISTIQQAADVIEG 76 (82)
T ss_dssp SCHHHHHHHHHHHTT-C-------CCCGGGSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-C-------ccCHHHHHhCCCHHHHHHHHHH
Confidence 455566666665542 1 233 457788899888888754
No 44
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=21.02 E-value=1.6e+02 Score=18.70 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChhhhccCCHHHHHHHHHHhccc
Q 034805 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (82)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa~~Lldt~CE 69 (82)
|+++|+ .++|..|.+.+-.-|+..+|..--+-.+..+-|..|+..+.+
T Consensus 15 L~~eEl-kkFK~~L~~~~~~~g~~~Ip~~~le~ad~~dLA~lLv~~y~~ 62 (110)
T 3qf2_A 15 LEDVDL-KKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGE 62 (110)
T ss_dssp CCHHHH-HHHHHHHHTCCSSSSCCCCCHHHHHHCCHHHHHHHHHHHHCH
T ss_pred cCHHHH-HHHHHHHcccccccCCCCCCHHHHhcCCHHHHHHHHHHHcCH
Confidence 566665 467889988765446667887655556888888888887754
No 45
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=20.33 E-value=38 Score=26.30 Aligned_cols=32 Identities=6% Similarity=0.137 Sum_probs=24.0
Q ss_pred cCceEEecCCCCccccCHHHHHHHHHHHHHhh
Q 034805 6 TETYVLLEPGVEEKFVTEEELKARLKYWLENW 37 (82)
Q Consensus 6 ~D~yVvLEp~~~EqflT~~Ell~~Lk~~L~~~ 37 (82)
.|.|+||-.+-==.+||.+|+...+..++...
T Consensus 338 ~D~fLVLaSDGLwd~ls~~eiv~iv~~~~~~~ 369 (467)
T 2pnq_A 338 QDKFLVLATDGLWETMHRQDVVRIVGEYLTGM 369 (467)
T ss_dssp TEEEEEEECHHHHTTSCHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEecCccccCChHHHHHHHHHHHhhc
Confidence 45577666655556789999999999988654
No 46
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=20.29 E-value=82 Score=17.30 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCC-hhhhccCCHHHHHHHHHHh
Q 034805 23 EEELKARLKYWLENWAGQVGKGGLP-PDLAKFATIDEAVAFLITN 66 (82)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP-~dL~k~~s~~~qa~~Lldt 66 (82)
.-|+..+|+..+. . .+| .++.+++|+.+-+.++...
T Consensus 40 ~~el~~~le~~fg-i-------~i~~~~l~~~~Tv~~l~~~i~~~ 76 (78)
T 1l0i_A 40 TVELVMALEEEFD-T-------EIPDEEAEKMTTVQAAIDYINGH 76 (78)
T ss_dssp HHHHHHHHHHHHT-C-------CCCHHHHTTCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-C-------CCCHHHHHHcCCHHHHHHHHHHh
Confidence 4555555555442 1 344 4678899999999887653
No 47
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=20.09 E-value=1.7e+02 Score=18.35 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.8
Q ss_pred ccCHHHHHHHHHHHHHhhhc
Q 034805 20 FVTEEELKARLKYWLENWAG 39 (82)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~ 39 (82)
+.++++++++|+.+|++...
T Consensus 133 ~~~~~~l~~~l~~~l~~~~~ 152 (164)
T 1sen_A 133 YVSAEQVVQGMKEAQERLTG 152 (164)
T ss_dssp CCSHHHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHHhccH
Confidence 47899999999999999875
Done!