Query 034808
Match_columns 82
No_of_seqs 100 out of 173
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 10:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034808.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034808hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s1da_ b.67.3.1 (A:) Soluble 79.9 0.3 2.2E-05 36.3 1.4 32 11-42 212-257 (317)
2 d1f97a2 b.1.1.4 (A:129-238) Ju 78.2 0.3 2.2E-05 27.8 0.8 28 16-43 83-110 (110)
3 d2f69a1 b.76.2.1 (A:116-193) H 57.6 2 0.00015 26.0 1.4 24 27-53 9-32 (78)
4 d2gexa1 d.17.4.9 (A:2-139) Nog 42.6 15 0.0011 20.9 3.8 32 36-67 106-137 (138)
5 d3cdda2 b.106.1.1 (A:2-180) Ba 36.3 6.1 0.00044 24.1 1.2 23 57-79 144-167 (179)
6 d1udza_ b.51.1.1 (A:) Isoleucy 36.2 3.9 0.00028 26.3 0.2 39 37-81 139-177 (179)
7 d2gysa1 b.1.2.1 (A:1-103) Comm 35.2 4.5 0.00033 25.5 0.4 23 11-33 66-90 (103)
8 d1wkaa1 b.51.1.1 (A:195-337) V 30.7 3.8 0.00027 26.0 -0.6 42 38-81 99-140 (143)
9 d1vqou1 g.39.1.6 (U:4-56) Ribo 27.8 11 0.00078 20.8 1.1 12 15-26 1-12 (53)
10 d2p0sa1 c.94.1.3 (A:48-183) Un 26.6 8.9 0.00064 23.9 0.7 16 35-50 4-19 (136)
11 d1fdra1 b.43.4.2 (A:2-100) Fer 26.0 23 0.0017 20.0 2.5 42 4-46 31-75 (99)
12 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 23.5 12 0.00086 23.7 0.9 17 1-17 100-116 (132)
13 d3d37a1 b.106.1.1 (A:6-178) Ba 23.4 22 0.0016 21.6 2.2 25 56-80 137-162 (173)
14 d1nbqa2 b.1.1.4 (A:130-233) Ju 21.3 8.4 0.00061 20.9 -0.2 22 16-37 82-103 (104)
No 1
>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.93 E-value=0.3 Score=36.29 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=24.4
Q ss_pred eeeecccc------------CcCCcccC-CCCcceE-eEeeEeCCC
Q 034808 11 LYIPRKCS------------ATNRLITS-KDHAAVQ-INIGHVDAD 42 (82)
Q Consensus 11 lYiPRKCS------------~TnriI~a-kDHaSVQ-Inva~vd~~ 42 (82)
..+||+|| .+|-||.+ .|...++ |.|+.++|+
T Consensus 212 ~FlPRr~S~e~Y~e~~DE~~G~N~li~~~e~F~~i~vi~ig~~~p~ 257 (317)
T d1s1da_ 212 FFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPT 257 (317)
T ss_dssp EECCSEEESSCCCHHHHTTCBCCEEEEECTTSSCEEEEECSCCCTT
T ss_pred EEechhhccccCCchhhhhcCCcEEEEecCCCceeEEEEcCCcCCC
Confidence 36799999 68999996 5667777 557777774
No 2
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.24 E-value=0.3 Score=27.83 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=22.7
Q ss_pred cccCcCCcccCCCCcceEeEeeEeCCCc
Q 034808 16 KCSATNRLITSKDHAAVQINIGHVDADG 43 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInva~vd~~G 43 (82)
.|.++|..=.+.-.++|+|+|-+||-.|
T Consensus 83 ~C~a~N~~G~~~~s~~v~l~V~~l~~~g 110 (110)
T d1f97a2 83 YCQAQNGYGTAMRSEAAHMDAVELNVGG 110 (110)
T ss_dssp EEEEECSSSCCEECCCEEEEEESSCSCC
T ss_pred EEEEEECCCcEEEEEEEEEEEEecCCCC
Confidence 6999998866666678999999987655
No 3
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.63 E-value=2 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred CCCcceEeEeeEeCCCceeeCceeEEE
Q 034808 27 KDHAAVQINIGHVDADGIYTGQFSTFA 53 (82)
Q Consensus 27 kDHaSVQInva~vd~~G~~tg~~~t~a 53 (82)
-|-+|+ |++||++|.|||+...|.
T Consensus 9 pdGGsl---vG~vne~gEmtGd~IAYv 32 (78)
T d2f69a1 9 PDGGSL---VGEVNEDGEMTGEKIAYV 32 (78)
T ss_dssp TTSCEE---EECCCTTSCCCEEEEEEE
T ss_pred CCCCEE---EeeecCCCccccceEEEE
Confidence 355554 799999999999998885
No 4
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}
Probab=42.60 E-value=15 Score=20.93 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=26.5
Q ss_pred eeEeCCCceeeCceeEEEEehhhhhcccchHH
Q 034808 36 IGHVDADGIYTGQFSTFALCGFVRAQGDGDSA 67 (82)
Q Consensus 36 va~vd~~G~~tg~~~t~ai~G~iR~~GesD~~ 67 (82)
+-.++++|++......|...+.++++|..=++
T Consensus 106 ~~~~~d~GkI~e~~~~~D~~~~~~QlG~~P~~ 137 (138)
T d2gexa1 106 ELRFSEAGKVVEHWDVFNFSPLFRDLGVVPDG 137 (138)
T ss_dssp EEEECTTSCEEEEEEEEECHHHHHHSTTCHHH
T ss_pred EEEEccCCEEEEEEEEECHHHHHHHcCCCCCC
Confidence 45667789999999999999999999876554
No 5
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella oneidensis [TaxId: 70863]}
Probab=36.29 E-value=6.1 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.2
Q ss_pred hhhhcccch-HHHHHHHHhccccc
Q 034808 57 FVRAQGDGD-SAIDRLWQKKKVEV 79 (82)
Q Consensus 57 ~iR~~GesD-~~l~rL~~~~~~~~ 79 (82)
++-+.|||| +.|.|||++.|++.
T Consensus 144 ~~~q~~Esd~~fl~Rla~~~G~~~ 167 (179)
T d3cdda2 144 IQIEQGETPHELLARLAKQRGVLL 167 (179)
T ss_dssp EECCTTCCHHHHHHHHHHTTTCEE
T ss_pred eEeecCCcHHHHHHHHHHHCCCEE
Confidence 445689999 88999999999864
No 6
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=36.18 E-value=3.9 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=28.6
Q ss_pred eEeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhccccccc
Q 034808 37 GHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 81 (82)
Q Consensus 37 a~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~~ 81 (82)
..||++|+|+.. .+.|--. .+++..+-...+++|+|.++
T Consensus 139 ~~Vd~~G~~~~~----~~~Gl~v--~dA~~~Ii~~L~~~g~L~~~ 177 (179)
T d1udza_ 139 KTVDEEGKLLVE----PFKGLYF--REANRAILRDLRGRGFLFKE 177 (179)
T ss_dssp CCBCTTSBBCST----TCTTCBH--HHHHHHHHHHHHHHTCEEEE
T ss_pred ccccCcceeccc----ccCCCCH--HHhHHHHHHHHHHCCCEEee
Confidence 457999999754 2455433 57899999888999988654
No 7
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.22 E-value=4.5 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.519 Sum_probs=18.0
Q ss_pred eeeeccc--cCcCCcccCCCCcceE
Q 034808 11 LYIPRKC--SATNRLITSKDHAAVQ 33 (82)
Q Consensus 11 lYiPRKC--S~TnriI~akDHaSVQ 33 (82)
-.|||+| -.+.-.|+.+|.=|.|
T Consensus 66 ~CvPrrCVipy~~F~~~d~DyfSF~ 90 (103)
T d2gysa1 66 RCVPRRCVIPCQSFVVTDVDYFSFQ 90 (103)
T ss_dssp SEEEEEEEEECSCCCTTCEEEEEEE
T ss_pred CCcCceEEeechheeeeccceEeec
Confidence 3789999 5677788888887765
No 8
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=30.66 E-value=3.8 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=28.2
Q ss_pred EeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhccccccc
Q 034808 38 HVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 81 (82)
Q Consensus 38 ~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~~ 81 (82)
-+|++|+|+.+...-.+.|--+. ++...+-..++++|++.+.
T Consensus 99 ~i~~~G~~~~~~~~~~~~Gl~~~--~A~~~Ii~~L~~~gll~k~ 140 (143)
T d1wkaa1 99 VINLEGRMEGERVPEALRGLDRF--EARRKAVELFREAGHLVKE 140 (143)
T ss_dssp SBCTTSBBCSTTSCGGGTTSBHH--HHHHHHHHHHHHHTCEEEE
T ss_pred cccccceEeeecchHhhCCCcHH--HHHHHHHHHHHhCCCEEee
Confidence 36889999876432224454443 6778888888999988654
No 9
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=27.82 E-value=11 Score=20.81 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.2
Q ss_pred ccccCcCCcccC
Q 034808 15 RKCSATNRLITS 26 (82)
Q Consensus 15 RKCS~TnriI~a 26 (82)
|+||++...|.+
T Consensus 1 r~CsF~g~~I~P 12 (53)
T d1vqou1 1 RECDYCGTDIEP 12 (53)
T ss_dssp CBCTTTCCBCCT
T ss_pred CcccccCCeecC
Confidence 689999998875
No 10
>d2p0sa1 c.94.1.3 (A:48-183) Uncharacterized protein PG0945 {Porphyromonas gingivalis [TaxId: 837]}
Probab=26.60 E-value=8.9 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=12.9
Q ss_pred EeeEeCCCceeeCcee
Q 034808 35 NIGHVDADGIYTGQFS 50 (82)
Q Consensus 35 nva~vd~~G~~tg~~~ 50 (82)
+|+.||++|.|...|+
T Consensus 4 ~IaVvDesG~f~~~fk 19 (136)
T d2p0sa1 4 TIAIADRTGEYEQLFK 19 (136)
T ss_dssp EEEEEETTSSSGGGGT
T ss_pred EEEEEcCCCcchhhcc
Confidence 5899999999876554
No 11
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.01 E-value=23 Score=20.03 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=22.0
Q ss_pred ccCceeeeeeeccccCcCC---cccCCCCcceEeEeeEeCCCceee
Q 034808 4 EEGQNMDLYIPRKCSATNR---LITSKDHAAVQINIGHVDADGIYT 46 (82)
Q Consensus 4 d~g~~VDlYiPRKCS~Tnr---iI~akDHaSVQInva~vd~~G~~t 46 (82)
..|++|.|.+|-.=...-| |.++.+...+.+.|-.++ +|.++
T Consensus 31 ~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~~~~~~~vk~~~-~G~~S 75 (99)
T d1fdra1 31 TAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVP-DGKLS 75 (99)
T ss_dssp CTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCT-TCSSH
T ss_pred CCCcEEEeccCCCCCcEEEEEccCCCCCCceeEEEEEEec-CcHHH
Confidence 4689999988732111111 333444566777776653 45443
No 12
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=23.54 E-value=12 Score=23.68 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.5
Q ss_pred CccccCceeeeeeeccc
Q 034808 1 MQNEEGQNMDLYIPRKC 17 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKC 17 (82)
|+|++|+..+.+||+==
T Consensus 100 m~~~~g~~F~v~Ip~F~ 116 (132)
T d1tzaa_ 100 MVSESGEHFNAIIKPFR 116 (132)
T ss_dssp EEETTCCEEEEEEEEEE
T ss_pred EEECCCCEEEEECCCEE
Confidence 78899999999999743
No 13
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=23.42 E-value=22 Score=21.58 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=19.2
Q ss_pred hhhhhcccch-HHHHHHHHhcccccc
Q 034808 56 GFVRAQGDGD-SAIDRLWQKKKVEVR 80 (82)
Q Consensus 56 G~iR~~GesD-~~l~rL~~~~~~~~~ 80 (82)
-+.-+.||+| +.|.|||++.|++.+
T Consensus 137 ~~~vQ~~ETd~~fl~Rla~~~G~~~~ 162 (173)
T d3d37a1 137 KIDIEPGETVWQALTHIANSVGLHPW 162 (173)
T ss_dssp CCCCCTTCBHHHHHHHHHHHTTCEEE
T ss_pred eEEecCCCCHHHHHHHHHHHCCCEEE
Confidence 3445779999 568999999998753
No 14
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.35 E-value=8.4 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=14.3
Q ss_pred cccCcCCcccCCCCcceEeEee
Q 034808 16 KCSATNRLITSKDHAAVQINIG 37 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInva 37 (82)
+|.++|..=.+.-.++|.+.|.
T Consensus 82 ~C~a~N~~G~~~~s~~v~v~v~ 103 (104)
T d1nbqa2 82 SCEARNGYGTPMTSNAVRMEAV 103 (104)
T ss_dssp EEEEECSSSCCEECCCBCCEEE
T ss_pred EEEEEECCCceEEEEEEEEEEE
Confidence 4888888655555556666553
Done!