Query 034809
Match_columns 82
No_of_seqs 108 out of 276
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 99.9 3E-27 6.5E-32 157.5 5.3 78 2-79 35-113 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 99.9 1.2E-25 2.6E-30 148.9 6.2 79 2-80 33-111 (111)
3 KOG0004 Ubiquitin/40S ribosoma 99.7 3.4E-18 7.4E-23 119.2 2.8 62 2-71 25-86 (156)
4 cd01793 Fubi Fubi ubiquitin-li 99.6 1.4E-15 3.1E-20 92.6 4.5 51 3-61 24-74 (74)
5 cd01807 GDX_N ubiquitin-like d 99.5 2.4E-14 5.2E-19 87.0 4.1 49 3-59 26-74 (74)
6 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 3.7E-14 8.1E-19 88.7 3.9 47 3-56 26-74 (75)
7 cd01797 NIRF_N amino-terminal 99.5 4.6E-14 1E-18 87.7 4.1 50 3-60 28-77 (78)
8 cd01800 SF3a120_C Ubiquitin-li 99.5 7.5E-14 1.6E-18 85.6 4.5 54 3-64 23-76 (76)
9 KOG0003 Ubiquitin/60s ribosoma 99.5 2.2E-15 4.8E-20 100.9 -2.9 52 2-61 25-76 (128)
10 cd01810 ISG15_repeat2 ISG15 ub 99.5 8.3E-14 1.8E-18 84.8 4.2 51 3-61 24-74 (74)
11 cd01802 AN1_N ubiquitin-like d 99.4 9.4E-14 2E-18 90.6 4.5 51 3-61 53-103 (103)
12 cd01798 parkin_N amino-termina 99.4 2.2E-13 4.7E-18 81.9 3.9 47 3-57 24-70 (70)
13 PTZ00044 ubiquitin; Provisiona 99.4 5.5E-13 1.2E-17 80.7 4.2 51 3-61 26-76 (76)
14 cd01806 Nedd8 Nebb8-like ubiq 99.4 6.9E-13 1.5E-17 79.5 4.5 51 3-61 26-76 (76)
15 cd01794 DC_UbP_C dendritic cel 99.4 7.8E-13 1.7E-17 80.6 3.8 46 3-56 24-69 (70)
16 cd01808 hPLIC_N Ubiquitin-like 99.3 1.1E-12 2.4E-17 79.1 4.0 47 3-57 25-71 (71)
17 cd01803 Ubiquitin Ubiquitin. U 99.3 2.9E-12 6.4E-17 76.8 4.3 51 3-61 26-76 (76)
18 cd01809 Scythe_N Ubiquitin-lik 99.3 6.8E-12 1.5E-16 74.5 4.1 47 3-57 26-72 (72)
19 PF00240 ubiquitin: Ubiquitin 99.3 1.1E-11 2.3E-16 73.5 4.8 48 3-58 21-68 (69)
20 KOG0005 Ubiquitin-like protein 99.2 2.2E-12 4.8E-17 78.8 0.8 44 4-55 27-70 (70)
21 cd01791 Ubl5 UBL5 ubiquitin-li 99.2 1.4E-11 3E-16 75.9 3.8 46 3-56 27-72 (73)
22 cd01805 RAD23_N Ubiquitin-like 99.2 3.4E-11 7.3E-16 72.8 4.4 48 3-58 26-75 (77)
23 cd01804 midnolin_N Ubiquitin-l 99.2 2.6E-11 5.7E-16 74.9 4.0 50 3-61 27-76 (78)
24 cd01763 Sumo Small ubiquitin-r 99.2 4E-11 8.6E-16 75.4 4.6 48 6-61 40-87 (87)
25 cd01796 DDI1_N DNA damage indu 99.2 2.3E-11 4.9E-16 73.9 3.4 45 3-55 25-70 (71)
26 cd01790 Herp_N Homocysteine-re 99.1 3.1E-11 6.7E-16 76.1 3.1 34 17-56 43-78 (79)
27 cd01792 ISG15_repeat1 ISG15 ub 99.1 5.5E-11 1.2E-15 73.4 3.1 48 3-58 28-77 (80)
28 cd01812 BAG1_N Ubiquitin-like 99.0 4.3E-10 9.3E-15 66.8 3.1 46 3-56 25-70 (71)
29 cd01799 Hoil1_N Ubiquitin-like 98.9 1.6E-09 3.4E-14 67.0 3.5 45 3-56 28-74 (75)
30 KOG0010 Ubiquitin-like protein 98.8 4.2E-09 9.1E-14 84.2 3.3 49 3-59 40-88 (493)
31 cd01813 UBP_N UBP ubiquitin pr 98.7 1.1E-08 2.5E-13 62.8 3.3 45 3-55 25-72 (74)
32 TIGR00601 rad23 UV excision re 98.6 2.6E-08 5.7E-13 77.5 4.1 47 3-57 26-75 (378)
33 smart00213 UBQ Ubiquitin homol 98.6 2.3E-08 5E-13 57.3 2.6 40 3-44 25-64 (64)
34 KOG0001 Ubiquitin and ubiquiti 98.6 1.6E-07 3.4E-12 53.5 4.8 47 5-59 27-73 (75)
35 cd01769 UBL Ubiquitin-like dom 98.6 9.5E-08 2.1E-12 55.3 3.9 46 3-56 23-68 (69)
36 cd01795 USP48_C USP ubiquitin- 98.6 9.7E-08 2.1E-12 63.2 4.3 52 3-62 30-82 (107)
37 PF11976 Rad60-SLD: Ubiquitin- 98.2 1.4E-06 3E-11 51.9 3.3 41 9-56 32-72 (72)
38 KOG4248 Ubiquitin-like protein 98.1 2.1E-06 4.5E-11 73.9 3.9 51 3-62 28-78 (1143)
39 cd01789 Alp11_N Ubiquitin-like 98.0 8E-06 1.7E-10 51.1 4.2 45 4-56 29-80 (84)
40 KOG0011 Nucleotide excision re 97.7 2E-05 4.3E-10 61.0 2.8 37 6-44 29-67 (340)
41 cd01801 Tsc13_N Ubiquitin-like 97.5 8.2E-05 1.8E-09 45.4 2.7 32 17-54 41-74 (77)
42 cd01788 ElonginB Ubiquitin-lik 97.4 0.00018 3.9E-09 48.6 3.3 42 17-58 39-81 (119)
43 KOG0006 E3 ubiquitin-protein l 97.2 0.00018 3.9E-09 56.3 1.9 50 3-60 29-79 (446)
44 cd00196 UBQ Ubiquitin-like pro 96.8 0.0027 5.8E-08 33.4 4.0 44 5-56 25-68 (69)
45 PF14560 Ubiquitin_2: Ubiquiti 96.8 0.0013 2.7E-08 40.8 3.0 44 4-55 30-81 (87)
46 PLN02560 enoyl-CoA reductase 96.8 0.0014 3.1E-08 49.9 3.5 44 3-54 29-80 (308)
47 KOG1769 Ubiquitin-like protein 95.4 0.034 7.4E-07 36.6 4.3 45 9-61 52-96 (99)
48 PF10302 DUF2407: DUF2407 ubiq 95.0 0.02 4.3E-07 37.1 2.2 23 15-37 41-63 (97)
49 PF08817 YukD: WXG100 protein 94.5 0.03 6.4E-07 34.2 2.0 30 19-54 48-78 (79)
50 PF11069 DUF2870: Protein of u 89.9 0.47 1E-05 31.2 3.3 36 21-61 3-38 (98)
51 KOG4495 RNA polymerase II tran 88.4 0.33 7.1E-06 32.3 1.7 38 17-54 39-79 (110)
52 KOG1872 Ubiquitin-specific pro 88.1 0.61 1.3E-05 37.9 3.4 48 1-56 27-74 (473)
53 PF10790 DUF2604: Protein of U 80.0 2 4.3E-05 26.8 2.4 30 25-60 45-74 (76)
54 COG5417 Uncharacterized small 79.8 3.8 8.1E-05 26.0 3.7 28 17-44 49-76 (81)
55 KOG0013 Uncharacterized conser 76.1 3.2 7E-05 30.9 3.0 34 9-44 178-211 (231)
56 KOG4583 Membrane-associated ER 72.9 0.67 1.5E-05 36.7 -1.3 24 17-40 51-74 (391)
57 TIGR02958 sec_mycoba_snm4 secr 71.8 4.5 9.7E-05 32.3 3.1 32 24-61 53-84 (452)
58 COG5227 SMT3 Ubiquitin-like pr 71.1 1.1 2.4E-05 29.5 -0.4 27 18-44 63-89 (103)
59 KOG3391 Transcriptional co-rep 70.8 4.9 0.00011 28.1 2.8 32 25-62 110-141 (151)
60 PF11543 UN_NPL4: Nuclear pore 67.3 4.1 9E-05 25.2 1.7 40 3-44 29-73 (80)
61 PF11620 GABP-alpha: GA-bindin 66.1 18 0.00038 23.4 4.4 55 3-63 18-72 (88)
62 PF00789 UBX: UBX domain; Int 65.6 14 0.00029 22.0 3.7 45 3-54 32-80 (82)
63 PF06487 SAP18: Sin3 associate 62.4 9.8 0.00021 25.5 2.9 26 19-44 88-114 (120)
64 PF15044 CLU_N: Mitochondrial 60.1 15 0.00033 22.4 3.2 37 18-60 24-61 (76)
65 cd01811 OASL_repeat1 2'-5' oli 55.7 8.3 0.00018 24.5 1.5 24 18-41 38-66 (80)
66 PF13019 Telomere_Sde2: Telome 51.5 41 0.00088 23.8 4.6 51 8-62 35-89 (162)
67 PF11470 TUG-UBL1: GLUT4 regul 46.6 26 0.00055 21.0 2.6 33 10-44 29-61 (65)
68 PF04233 Phage_Mu_F: Phage Mu 44.5 14 0.00029 22.9 1.2 11 72-82 101-112 (112)
69 PF06200 tify: tify domain; I 44.2 26 0.00057 18.9 2.2 14 16-29 4-17 (36)
70 cd01774 Faf1_like2_UBX Faf1 ik 38.8 63 0.0014 20.0 3.6 39 3-44 30-78 (85)
71 cd01770 p47_UBX p47-like ubiqu 38.0 62 0.0013 19.7 3.4 39 3-42 30-71 (79)
72 PF14732 UAE_UbL: Ubiquitin/SU 35.5 54 0.0012 20.4 2.9 25 20-44 34-62 (87)
73 KOG2561 Adaptor protein NUB1, 35.3 17 0.00037 30.2 0.7 35 6-42 68-102 (568)
74 PF13889 Chromosome_seg: Chrom 33.1 31 0.00067 20.4 1.4 16 18-33 23-38 (56)
75 KOG0771 Prolactin regulatory e 27.4 95 0.0021 25.0 3.7 42 23-64 16-60 (398)
76 PF12754 Blt1: Cell-cycle cont 25.9 23 0.00049 27.6 0.0 30 10-41 126-160 (309)
77 KOG0007 Splicing factor 3a, su 24.6 40 0.00087 25.8 1.1 32 3-36 309-340 (341)
78 PF10209 DUF2340: Uncharacteri 24.2 57 0.0012 22.2 1.7 15 30-44 87-101 (122)
79 smart00166 UBX Domain present 22.0 1.4E+02 0.0031 17.6 3.1 38 3-42 30-72 (80)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.94 E-value=3e-27 Score=157.54 Aligned_cols=78 Identities=50% Similarity=0.777 Sum_probs=74.0
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccccccCCCCC-CceEE
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSK-SRCLC 79 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k~~~~~~~-~~C~C 79 (82)
.+++||++|||+|.++++|||||+||+|+|++||++|+++.|++|++++|||||+|++.++++.+|+.+..++ .+|+|
T Consensus 35 I~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 35 VVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred HHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 3578999999999888999999999999999999999999999999999999999999999999888888888 99998
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.92 E-value=1.2e-25 Score=148.90 Aligned_cols=79 Identities=38% Similarity=0.665 Sum_probs=57.7
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccccccCCCCCCceEEe
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSKSRCLCS 80 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k~~~~~~~~~C~C~ 80 (82)
+|++||+||+..|.+++++||||+||+|+|++||++|+++.++.|++++|||||+|++..+++.+++.+..++++|+|+
T Consensus 33 i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~ 111 (111)
T PF13881_consen 33 IWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC 111 (111)
T ss_dssp HHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred HHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence 4789999999999999999999999999999999999999999888999999999999999887666444344899985
No 3
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.4e-18 Score=119.21 Aligned_cols=62 Identities=34% Similarity=0.407 Sum_probs=55.7
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccccccCC
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSD 71 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k~~~~ 71 (82)
|+..-+||+||||+ ++|||||+|++|||++||+||+|+..+ |+||++++.|+.++++++...
T Consensus 25 ~~Kakiq~~egIp~--dqqrlifag~qLedgrtlSDY~Iqkes------tl~l~l~l~Gg~kkrkkk~~~ 86 (156)
T KOG0004|consen 25 NVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGAKKRKKKSYT 86 (156)
T ss_pred HHHHhhhcccCCCc--hhhhhhhhhcccccCCccccccccccc------eEEEEEEecCCcccccccccc
Confidence 34567899999997 999999999999999999999999988 999999999999998876544
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.59 E-value=1.4e-15 Score=92.57 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=46.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|+.++ |+||++|+.++
T Consensus 24 lK~~i~~~~gip~--~~q~Li~~Gk~L~D~~tL~~~~i~~~~------tl~l~~~l~GG 74 (74)
T cd01793 24 IKAHVAGLEGIDV--EDQVLLLAGVPLEDDATLGQCGVEELC------TLEVAGRLLGG 74 (74)
T ss_pred HHHHHHhhhCCCH--HHEEEEECCeECCCCCCHHHcCCCCCC------EEEEEEecCCC
Confidence 4566789999997 999999999999999999999999988 99999999875
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.50 E-value=2.4e-14 Score=87.02 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=44.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++++|+|+ ++|||||+||.|+|+.||++|+|+.++ |+||++|++
T Consensus 26 lK~~i~~~~gi~~--~~q~L~~~G~~L~d~~~L~~~~i~~~~------~l~l~~~~~ 74 (74)
T cd01807 26 LKKLVSEHLNVPE--EQQRLLFKGKALADDKRLSDYSIGPNA------KLNLVVRPP 74 (74)
T ss_pred HHHHHHHHHCCCH--HHeEEEECCEECCCCCCHHHCCCCCCC------EEEEEEcCC
Confidence 4456788999997 999999999999999999999999999 999999864
No 6
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.48 E-value=3.7e-14 Score=88.73 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=41.0
Q ss_pred hhhhhhhh--cCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEK--ENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~--eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-++++ +|+|. +++|||||+||+|+|++||++|+|+.++ |+|||.
T Consensus 26 LK~kI~~~~~egi~~-~dqQrLIy~GKiL~D~~TL~dygI~~gs------tlhLv~ 74 (75)
T cd01815 26 LKQLIAAQLPDSLPD-PELIDLIHCGRKLKDDQTLDFYGIQSGS------TIHILR 74 (75)
T ss_pred HHHHHHHhhccCCCC-hHHeEEEeCCcCCCCCCcHHHcCCCCCC------EEEEEe
Confidence 55677888 56753 4999999999999999999999999999 999985
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.47 E-value=4.6e-14 Score=87.67 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=45.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
+.+-+++.+|+|+ ++|||||+||+|+|+.||++|||+.++ |+||++|+..
T Consensus 28 lK~~i~~~~gi~~--~~QrLi~~Gk~L~D~~tL~~y~i~~~~------~i~l~~~~~~ 77 (78)
T cd01797 28 LREKIQELFNVEP--ECQRLFYRGKQMEDGHTLFDYNVGLND------IIQLLVRQDP 77 (78)
T ss_pred HHHHHHHHhCCCH--HHeEEEeCCEECCCCCCHHHcCCCCCC------EEEEEEecCC
Confidence 5567889999997 999999999999999999999999999 9999998753
No 8
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.46 E-value=7.5e-14 Score=85.59 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=48.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 64 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk 64 (82)
+.+-++...|+|+ +.|||+|+|+.|+|++||++|+|+.++ ++||++++.++.||
T Consensus 23 lK~~i~~~~gip~--~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~~gg~~~ 76 (76)
T cd01800 23 LKVKIHEETGMPA--GKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKERGGRKK 76 (76)
T ss_pred HHHHHHHHHCCCH--HHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEecCCCcCC
Confidence 4556778899996 999999999999999999999999999 99999999887764
No 9
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.2e-15 Score=100.90 Aligned_cols=52 Identities=37% Similarity=0.471 Sum_probs=48.1
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
|+.--+++++|+|+ ++|||||+||+|||++||++|||+..| |+|+++++.++
T Consensus 25 ~vKA~i~~~~Gi~~--~~~~L~~~~k~LED~~Tla~Y~i~~~~------Tl~~~~rL~GG 76 (128)
T KOG0003|consen 25 NVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKES------TLHLVLRLRGG 76 (128)
T ss_pred HHHHHhccccCCCH--HHHHHHhcccccccCCcccccCccchh------hhhhhHHHhcC
Confidence 45567899999996 999999999999999999999999988 99999999988
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.45 E-value=8.3e-14 Score=84.76 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=46.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||+|+||.|+|++||++|+|+.++ |+||++++.++
T Consensus 24 lK~~I~~~~gi~~--~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~l~~~l~gg 74 (74)
T cd01810 24 LKQQVSQRERVQA--DQFWLSFEGRPMEDEHPLGEYGLKPGC------TVFMNLRLRGG 74 (74)
T ss_pred HHHHHHHHhCCCH--HHeEEEECCEECCCCCCHHHcCCCCCC------EEEEEEEccCC
Confidence 4556788999997 999999999999999999999999998 99999998764
No 11
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.45 E-value=9.4e-14 Score=90.55 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=46.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++++|+|+ ++|||||+||.|+|+.||++|+|+.++ |+||++++.++
T Consensus 53 lK~kI~~~~gip~--~~QrLi~~Gk~L~D~~tL~dy~I~~~s------tL~l~~~l~GG 103 (103)
T cd01802 53 VKAKIQRLEGIPV--AQQHLIWNNMELEDEYCLNDYNISEGC------TLKLVLAMRGG 103 (103)
T ss_pred HHHHHHHHhCCCh--HHEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEecCCC
Confidence 5667889999997 999999999999999999999999998 99999998764
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.41 E-value=2.2e-13 Score=81.87 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=42.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+-+++++|+|. ++|||||+|+.|+|+.||++|+|+.++ |+||+.|
T Consensus 24 lK~~i~~~~gi~~--~~q~Li~~G~~L~d~~~l~~~~i~~~s------tl~l~~~ 70 (70)
T cd01798 24 LKEVVAKRQGVPP--DQLRVIFAGKELRNTTTIQECDLGQQS------ILHAVRR 70 (70)
T ss_pred HHHHHHHHHCCCH--HHeEEEECCeECCCCCcHHHcCCCCCC------EEEEEeC
Confidence 4566788999996 999999999999999999999999999 9999876
No 13
>PTZ00044 ubiquitin; Provisional
Probab=99.38 E-value=5.5e-13 Score=80.69 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=45.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|+.||++|+++.++ |+||++++.++
T Consensus 26 lK~~i~~~~gi~~--~~q~L~~~g~~L~d~~~l~~~~i~~~~------~i~l~~~~~gg 76 (76)
T PTZ00044 26 VKMALQEKEGIDV--KQIRLIYSGKQMSDDLKLSDYKVVPGS------TIHMVLQLRGG 76 (76)
T ss_pred HHHHHHHHHCCCH--HHeEEEECCEEccCCCcHHHcCCCCCC------EEEEEEEccCC
Confidence 4556788999996 999999999999999999999999988 99999997664
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.38 E-value=6.9e-13 Score=79.52 Aligned_cols=51 Identities=29% Similarity=0.336 Sum_probs=46.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+.+++..|+|+ +.|||+|+|+.|+|+.||++|+++.++ ++||+++..++
T Consensus 26 lK~~i~~~~g~~~--~~qrL~~~g~~L~d~~tl~~~~i~~g~------~i~l~~~~~gg 76 (76)
T cd01806 26 IKERVEEKEGIPP--QQQRLIYSGKQMNDDKTAADYKLEGGS------VLHLVLALRGG 76 (76)
T ss_pred HHHHHhHhhCCCh--hhEEEEECCeEccCCCCHHHcCCCCCC------EEEEEEEccCC
Confidence 5677888999996 999999999999999999999999999 99999987664
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.35 E-value=7.8e-13 Score=80.64 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=41.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|..++ |+||.+
T Consensus 24 lK~~I~~~~gi~~--~~q~Li~~G~~L~D~~~l~~~~i~~~~------tv~~~~ 69 (70)
T cd01794 24 LKKQLQAAEGVDP--CCQRWFFSGKLLTDKTRLQETKIQKDY------VVQVIV 69 (70)
T ss_pred HHHHHHHHhCCCH--HHeEEEECCeECCCCCCHHHcCCCCCC------EEEEEe
Confidence 4556788999996 999999999999999999999999888 999986
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.34 E-value=1.1e-12 Score=79.09 Aligned_cols=47 Identities=30% Similarity=0.448 Sum_probs=41.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+-+++.+|+|. ++|||||+||.|+|+.||++|+++.++ |+||++|
T Consensus 25 lK~~I~~~~~i~~--~~~~Li~~Gk~L~d~~tL~~~~i~~~s------tl~l~~~ 71 (71)
T cd01808 25 FKEAVSKKFKANQ--EQLVLIFAGKILKDTDTLTQHNIKDGL------TVHLVIK 71 (71)
T ss_pred HHHHHHHHhCCCH--HHEEEEECCeEcCCCCcHHHcCCCCCC------EEEEEEC
Confidence 3455677888886 999999999999999999999999998 9999985
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.30 E-value=2.9e-12 Score=76.77 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=45.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-++...|+|+ ++|||+|+|+.|+|++||++|+++.++ |+||++++.++
T Consensus 26 lK~~i~~~~g~~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~------~i~l~~~~~gg 76 (76)
T cd01803 26 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 76 (76)
T ss_pred HHHHHHHHhCCCH--HHeEEEECCEECCCCCcHHHcCCCCCC------EEEEEEEccCC
Confidence 4556778889986 999999999999999999999999998 99999998764
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.26 E-value=6.8e-12 Score=74.49 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=42.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+.+++..|+|+ +.|||+|+|+.|+|+++|++|+++.++ ++||++|
T Consensus 26 lK~~i~~~~gi~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~------~l~l~~~ 72 (72)
T cd01809 26 LKEKIAEEVGIPV--EQQRLIYSGRVLKDDETLSEYKVEDGH------TIHLVKR 72 (72)
T ss_pred HHHHHHHHHCcCH--HHeEEEECCEECCCcCcHHHCCCCCCC------EEEEEeC
Confidence 5567788889986 999999999999999999999999999 9999875
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.25 E-value=1.1e-11 Score=73.52 Aligned_cols=48 Identities=29% Similarity=0.484 Sum_probs=42.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++..++|+ ++|||+|+|+.|+|+.||++|+|..++ ++||++++
T Consensus 21 lK~~i~~~~~~~~--~~~~L~~~G~~L~d~~tL~~~~i~~~~------~I~l~~k~ 68 (69)
T PF00240_consen 21 LKQKIAEETGIPP--EQQRLIYNGKELDDDKTLSDYGIKDGS------TIHLVIKP 68 (69)
T ss_dssp HHHHHHHHHTSTG--GGEEEEETTEEESTTSBTGGGTTSTTE------EEEEEESS
T ss_pred hhhhccccccccc--ccceeeeeeecccCcCcHHHcCCCCCC------EEEEEEec
Confidence 3445677888886 999999999999999999999999998 99998875
No 20
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.2e-12 Score=78.76 Aligned_cols=44 Identities=34% Similarity=0.381 Sum_probs=40.5
Q ss_pred hhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEE
Q 034809 4 HIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
.+-++|+||||+ .+|||||+||++.|++|-++|++..|| ++|+|
T Consensus 27 KErvEEkeGIPp--~qqrli~~gkqm~DD~tA~~Y~~~~GS------VlHlv 70 (70)
T KOG0005|consen 27 KERVEEKEGIPP--QQQRLIYAGKQMNDDKTAAHYNLLGGS------VLHLV 70 (70)
T ss_pred HHHhhhhcCCCc--hhhhhhhccccccccccHHHhhhccce------eEeeC
Confidence 456789999996 999999999999999999999999999 99985
No 21
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.21 E-value=1.4e-11 Score=75.88 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=40.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-++++.|+|+ +.|||||+|+.|+|++||++|+|..++ |+||.-
T Consensus 27 LK~~I~~~~~~~~--~~qrLi~~Gk~L~D~~tL~~ygi~~~s------tv~l~~ 72 (73)
T cd01791 27 LKKLIAAQTGTRP--EKIVLKKWYTIFKDHISLGDYEIHDGM------NLELYY 72 (73)
T ss_pred HHHHHHHHhCCCh--HHEEEEeCCcCCCCCCCHHHcCCCCCC------EEEEEe
Confidence 3455677788886 999999999999999999999999999 999864
No 22
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.18 E-value=3.4e-11 Score=72.83 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=41.3
Q ss_pred hhhhhhhhcCC--CCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENG--PKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~--P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+ |+ ++|||+|+|+.|+|+.||++|+|+.++ ++|++++.
T Consensus 26 lK~~i~~~~~i~~~~--~~q~L~~~G~~L~d~~~L~~~~i~~~~------~i~~~~~~ 75 (77)
T cd01805 26 LKEKIEEEKGCDYPP--EQQKLIYSGKILKDDTTLEEYKIDEKD------FVVVMVSK 75 (77)
T ss_pred HHHHHHHhhCCCCCh--hHeEEEECCEEccCCCCHHHcCCCCCC------EEEEEEec
Confidence 44557788898 64 999999999999999999999999999 88887653
No 23
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.18 E-value=2.6e-11 Score=74.86 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=43.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-++++.++|+ ++|||||+||.|+|+ ||++|||..++ |+||+..+.++
T Consensus 27 LK~~I~~~~~~~~--~~qrL~~~Gk~L~d~-~L~~~gi~~~~------~i~l~~~~~~~ 76 (78)
T cd01804 27 LKKRISQRLKVPK--ERLALLHRETRLSSG-KLQDLGLGDGS------KLTLVPTVEAG 76 (78)
T ss_pred HHHHHHHHhCCCh--HHEEEEECCcCCCCC-cHHHcCCCCCC------EEEEEeecccc
Confidence 3445677788886 999999999999999 99999999998 99999887654
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.17 E-value=4e-11 Score=75.39 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=43.9
Q ss_pred hhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 6 YLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 6 w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
-.++++|+|. ++|||+|+|+.|+++.|+++|++..++ |+|+++++.++
T Consensus 40 ~y~~~~gi~~--~~~rf~f~G~~L~~~~T~~~l~m~d~d------~I~v~l~l~GG 87 (87)
T cd01763 40 AYCQRQGLSM--NSVRFLFDGQRIRDNQTPDDLGMEDGD------EIEVMLEQTGG 87 (87)
T ss_pred HHHHHhCCCc--cceEEEECCeECCCCCCHHHcCCCCCC------EEEEEEecccC
Confidence 3467889996 999999999999999999999999999 99999998775
No 25
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.17 E-value=2.3e-11 Score=73.86 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=39.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCc-cccccCCCCCCCCCCCcEEEEEE
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~-~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+ .+|++|+|+.++ ++||-
T Consensus 25 lK~~I~~~~gip~--~~q~Li~~Gk~L~D~~~~L~~~gi~~~~------~l~l~ 70 (71)
T cd01796 25 FKALCEAESGIPA--SQQQLIYNGRELVDNKRLLALYGVKDGD------LVVLR 70 (71)
T ss_pred HHHHHHHHhCCCH--HHeEEEECCeEccCCcccHHHcCCCCCC------EEEEe
Confidence 4566788999997 999999999999987 789999999999 88873
No 26
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.14 E-value=3.1e-11 Score=76.06 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCceEEEecceecCCccccccCC--CCCCCCCCCcEEEEEEe
Q 034809 17 VNNVQLIHAGKILEDNMTIAESR--LPVVELPGTAITMHVVL 56 (82)
Q Consensus 17 ~~~qrLI~~Gk~Led~~tL~~~~--i~~g~~p~~~~Tmhlv~ 56 (82)
|++|||||+||+|+|+.||++|. +..+. |||||-
T Consensus 43 ~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~------tiHLV~ 78 (79)
T cd01790 43 EQDQRLIYSGKLLPDHLKLRDVLRKQDEYH------MVHLVC 78 (79)
T ss_pred hhHeEEEEcCeeccchhhHHHHhhcccCCc------eEEEEe
Confidence 59999999999999999999996 87766 999984
No 27
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.11 E-value=5.5e-11 Score=73.41 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=42.1
Q ss_pred hhhhhhhhcCCCCCCCceEE--EecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrL--I~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++..|+|. ++||| ||+|++|+|++||++|||..++ |+||+++.
T Consensus 28 lK~~I~~~~~i~~--~~qrL~~~~~G~~L~D~~tL~~~gi~~gs------~l~l~~~~ 77 (80)
T cd01792 28 LKQQIAQKIGVPA--FQQRLAHLDSREVLQDGVPLVSQGLGPGS------TVLLVVQN 77 (80)
T ss_pred HHHHHHHHhCCCH--HHEEEEeccCCCCCCCCCCHHHcCCCCCC------EEEEEEEc
Confidence 3455677888886 99999 9999999999999999999998 99999874
No 28
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.98 E-value=4.3e-10 Score=66.77 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=40.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-+++..|+|+ ++|||+|+|+.|+|+++|++|+|..|+ ++||+.
T Consensus 25 lK~~i~~~~gi~~--~~q~L~~~g~~l~d~~~L~~~~i~~g~------~l~v~~ 70 (71)
T cd01812 25 LKKMLAPVTGVEP--RDQKLIFKGKERDDAETLDMSGVKDGS------KVMLLE 70 (71)
T ss_pred HHHHHHHhhCCCh--HHeEEeeCCcccCccCcHHHcCCCCCC------EEEEec
Confidence 4556778899996 999999999999999999999999999 888864
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.89 E-value=1.6e-09 Score=67.03 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=39.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecC-CccccccCCCC-CCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLP-VVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Le-d~~tL~~~~i~-~g~~p~~~~Tmhlv~ 56 (82)
+.+++++++|+|+ ++||| |+|+.|+ |++||++|++. .|+ |+||.+
T Consensus 28 lK~kI~~~~gip~--~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------~~~l~~ 74 (75)
T cd01799 28 LKDKVFLDYGFPP--AVQRW-VIGQRLARDQETLYSHGIRTNGD------SAFLYI 74 (75)
T ss_pred HHHHHHHHHCcCH--HHEEE-EcCCeeCCCcCCHHHcCCCCCCC------EEEEEe
Confidence 5678899999996 99999 9999995 77999999998 678 888864
No 30
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.78 E-value=4.2e-09 Score=84.23 Aligned_cols=49 Identities=27% Similarity=0.472 Sum_probs=41.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
|.+-+...-++|+ ++++|||+||+|.|+.||..|+|++|- |+|||....
T Consensus 40 lKE~I~~~f~a~~--dqlvLIfaGrILKD~dTL~~~gI~Dg~------TvHLVik~~ 88 (493)
T KOG0010|consen 40 LKELIAQRFGAPP--DQLVLIYAGRILKDDDTLKQYGIQDGH------TVHLVIKSQ 88 (493)
T ss_pred HHHHHHHhcCCCh--hHeeeeecCccccChhhHHHcCCCCCc------EEEEEeccC
Confidence 3444555556776 999999999999999999999999998 999998754
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.72 E-value=1.1e-08 Score=62.79 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=39.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEe---cceecCCccccccCCCCCCCCCCCcEEEEEE
Q 034809 3 FHIYLAEKENGPKTVNNVQLIH---AGKILEDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~---~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
|.+-+++..|+|+ ++||||| .|+.|+|+.+|++|+|..++ +++|+
T Consensus 25 lK~~i~~~tgvp~--~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~------~i~lm 72 (74)
T cd01813 25 LKQFIKTLTGVLP--ERQKLLGLKVKGKPAEDDVKISALKLKPNT------KIMMM 72 (74)
T ss_pred HHHHHHHHHCCCH--HHEEEEeecccCCcCCCCcCHHHcCCCCCC------EEEEE
Confidence 5567788999996 9999996 99999999999999999888 77774
No 32
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=2.6e-08 Score=77.46 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=39.5
Q ss_pred hhhhhhhhcC---CCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKEN---GPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg---~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+-+++..| +|. ++|||||+||+|+|+.||++|+|..++ ++++++.
T Consensus 26 LK~kI~~~~g~~~ip~--~~QkLIy~GkiL~Dd~tL~dy~I~e~~------~Ivvmv~ 75 (378)
T TIGR00601 26 LKEKIEAEQGKDAYPV--AQQKLIYSGKILSDDKTVREYKIKEKD------FVVVMVS 75 (378)
T ss_pred HHHHHHHhhCCCCCCh--hHeEEEECCEECCCCCcHHHcCCCCCC------EEEEEec
Confidence 4556677777 886 999999999999999999999999888 6666654
No 33
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.63 E-value=2.3e-08 Score=57.30 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=34.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
+.+-+++..|+|+ +.|||+|+|+.|+|+.||++|++..++
T Consensus 25 lk~~i~~~~~~~~--~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 25 LKEKIAELTGIPV--EQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred HHHHHHHHHCCCH--HHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 3455677889986 899999999999999999999998764
No 34
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.56 E-value=1.6e-07 Score=53.51 Aligned_cols=47 Identities=34% Similarity=0.457 Sum_probs=41.4
Q ss_pred hhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 5 IYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 5 ~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
.-+.+++|+|. ++|+|+|.|+.|+|+.+|++|+|..++ ++|++.++.
T Consensus 27 ~~i~~~~~~~~--~~q~~~~~~~~l~d~~~l~~~~i~~~~------~~~l~~~~~ 73 (75)
T KOG0001|consen 27 AKIRDKEGIPV--DQQRLIFGGKPLEDGRTLADYNIQEGS------TLHLVLSLR 73 (75)
T ss_pred HHHHhhcCCCC--eeEEEEECCEECcCCCcHHHhCCCCCC------EEEEEEecC
Confidence 44567788986 999999999999999999999999888 999988765
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.56 E-value=9.5e-08 Score=55.31 Aligned_cols=46 Identities=37% Similarity=0.533 Sum_probs=38.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-+++..|+|. +.|+|+|+|+.|+|+.+|++|++..++ ++|+..
T Consensus 23 lK~~i~~~~~~~~--~~~~l~~~g~~l~d~~~l~~~~v~~~~------~i~v~~ 68 (69)
T cd01769 23 LKAKIAAKEGVPP--EQQRLIYAGKILKDDKTLSDYGIQDGS------TLHLVL 68 (69)
T ss_pred HHHHHHHHHCcCh--HHEEEEECCcCCCCcCCHHHCCCCCCC------EEEEEE
Confidence 3445566778886 899999999999999999999999888 888754
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.56 E-value=9.7e-08 Score=63.21 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=43.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceec-CCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKIL-EDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~L-ed~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-++...++|+ ++|+|+|+|+.| ||.+||++|+|..++ +++|.+..+..+
T Consensus 30 LK~lImQ~f~V~P--~dQkL~~dG~~L~DDsrTLssyGv~sgS------vl~LlideP~~d 82 (107)
T cd01795 30 LKIQIMHAFSVAP--FDQNLSIDGKILSDDCATLGTLGVIPES------VILLKADEPIAD 82 (107)
T ss_pred HHHHHHHHhcCCc--ccceeeecCceeccCCccHHhcCCCCCC------EEEEEecCCccc
Confidence 4455777889985 999999999999 568999999999988 999998766554
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.22 E-value=1.4e-06 Score=51.95 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=32.7
Q ss_pred hhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 9 EKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 9 e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+..|+|. .+.++|+|.|+.|+++.|+++|++..++ ++||++
T Consensus 32 ~~~~i~~-~~~~~l~fdG~~L~~~~T~~~~~ied~d------~Idv~I 72 (72)
T PF11976_consen 32 EKKGIPP-EESIRLIFDGKRLDPNDTPEDLGIEDGD------TIDVII 72 (72)
T ss_dssp HHHTTTT--TTEEEEETTEEE-TTSCHHHHT-STTE------EEEEE-
T ss_pred HhhCCCc-cceEEEEECCEEcCCCCCHHHCCCCCCC------EEEEEC
Confidence 4557763 2899999999999999999999999999 899864
No 38
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.1e-06 Score=73.86 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=44.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
|.+-+.++.+||. +.|||||.||.|.|++++.+|+| +|. |+|||=|++.+.
T Consensus 28 ~~d~~r~~~ni~s--~~qr~i~~grvl~~~k~vq~~~v-dgk------~~hlverppp~~ 78 (1143)
T KOG4248|consen 28 FKDHIRASVNIPS--EKQRLIYQGRVLQDDKKVQEYNV-DGK------VIHLVERPPPQT 78 (1143)
T ss_pred HHHHHHHhccccc--ccceeeecceeeccchhhhhccC-CCe------EEEeeccCCCCc
Confidence 4556677889997 99999999999999999999999 688 999999977654
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.04 E-value=8e-06 Score=51.08 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=36.9
Q ss_pred hhhhhhhcCCCCCCCceEE-Eecce-----ec-CCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 4 HIYLAEKENGPKTVNNVQL-IHAGK-----IL-EDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrL-I~~Gk-----~L-ed~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
.+-.+...|+|+ +.||| +|.|+ .| +|.++|++|++..|. ++||+=
T Consensus 29 K~kl~~~~G~~~--~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~------~IhVvD 80 (84)
T cd01789 29 KKKLELVVGTPA--SSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGC------RIHVID 80 (84)
T ss_pred HHHHHHHHCCCc--cceEEEEEcCCCCeEeecCCCccEeeeccCCCCC------EEEEEe
Confidence 344455679986 99999 58999 56 788899999999999 999974
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.75 E-value=2e-05 Score=60.99 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=31.6
Q ss_pred hhhhhcC--CCCCCCceEEEecceecCCccccccCCCCCCC
Q 034809 6 YLAEKEN--GPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 6 w~~e~eg--~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
-++.-.| .|. ++|+|||+||+|.|+.|+.+|+|...+
T Consensus 29 kIet~~g~dyP~--~~QkLIy~GkiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 29 KIETEKGPDYPA--EQQKLIYSGKILKDETTVGEYKVKEKK 67 (340)
T ss_pred HHHhccCCCCch--hhheeeecceeccCCcchhhhccccCc
Confidence 3444455 676 999999999999999999999999877
No 41
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.52 E-value=8.2e-05 Score=45.43 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=28.4
Q ss_pred CCceEE--EecceecCCccccccCCCCCCCCCCCcEEEEE
Q 034809 17 VNNVQL--IHAGKILEDNMTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 17 ~~~qrL--I~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
++.||| ++.|+.|.|++||++|++..|+ |+|+
T Consensus 41 ~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~------~lyv 74 (77)
T cd01801 41 VNRQSLRLEPKGKSLKDDDTLVDLGVGAGA------TLYV 74 (77)
T ss_pred cceeEEEeCCCCcccCCcccHhhcCCCCCC------EEEE
Confidence 488888 6999999999999999999887 8876
No 42
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.39 E-value=0.00018 Score=48.57 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCceEEEecceecCCccccccCCCCCCCC-CCCcEEEEEEecc
Q 034809 17 VNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAITMHVVLRP 58 (82)
Q Consensus 17 ~~~qrLI~~Gk~Led~~tL~~~~i~~g~~-p~~~~Tmhlv~~~ 58 (82)
|++|||+-.+..|||++||+|||+..... +..+.++-|.+|-
T Consensus 39 p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 39 PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred hhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 59999998889999999999999953211 2334588888874
No 43
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00018 Score=56.35 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=40.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEE-eccCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV-LRPSL 60 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv-~~~~~ 60 (82)
+.+=.+-..|+|+ +++|+||+||.|.|+-|+..+.+...+ .+|.+ +|+..
T Consensus 29 lke~Vak~~gvp~--D~L~viFaGKeLs~~ttv~~cDL~qqs------~~hi~~lRP~~ 79 (446)
T KOG0006|consen 29 LKEVVAKRQGVPA--DQLRVIFAGKELSNDTTVQNCDLSQQS------ATHIMLLRPWR 79 (446)
T ss_pred HHHHHHHhhCCCh--hheEEEEeccccccCceeecccccccc------hhhhhccCccc
Confidence 3444556789997 999999999999999999988887766 77877 56543
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=96.85 E-value=0.0027 Score=33.35 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=36.3
Q ss_pred hhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 5 IYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 5 ~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+...++.|.+ ++.++|++.|..+++...+.+|++..++ ++|+..
T Consensus 25 ~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~i~~~~ 68 (69)
T cd00196 25 EKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGD------ELVLVP 68 (69)
T ss_pred HHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCC------EEEEEe
Confidence 4455666765 4999999999999999988899999888 888764
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.83 E-value=0.0013 Score=40.83 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred hhhhhhhcCCCCCCCceEEEec--------ceecCCccccccCCCCCCCCCCCcEEEEEE
Q 034809 4 HIYLAEKENGPKTVNNVQLIHA--------GKILEDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrLI~~--------Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
.+-.+...|+|+ +.|||.+. -...+|.++|.+|++..|. ++||+
T Consensus 30 K~kl~~~~Gi~~--~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~------~i~V~ 81 (87)
T PF14560_consen 30 KQKLEKLTGIPP--SDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGM------RIHVV 81 (87)
T ss_dssp HHHHHHHHTS-T--TTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTE------EEEEE
T ss_pred HHHHHHHhCCCc--ccEEEEEEecCCCccccccCCCccEeecCCCCCCC------EEEEE
Confidence 344556679996 99999776 2233679999999999998 89985
No 46
>PLN02560 enoyl-CoA reductase
Probab=96.78 E-value=0.0014 Score=49.85 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=34.4
Q ss_pred hhhhhhhhcCC-CCCCCceEEEe---cc----eecCCccccccCCCCCCCCCCCcEEEEE
Q 034809 3 FHIYLAEKENG-PKTVNNVQLIH---AG----KILEDNMTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 3 ~~~w~~e~eg~-P~s~~~qrLI~---~G----k~Led~~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
+.+.++++.++ + +++|||++ .| +.|+|++||+++++..++ |+++
T Consensus 29 LK~~Isk~~~~~~--~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gs------tLy~ 80 (308)
T PLN02560 29 LKKAIHKRKKKYY--PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGG------TVVF 80 (308)
T ss_pred HHHHHHHHcCCCC--hhheEEEEecCCCCcCccccCCCCCHHhcCCCCCc------eEEE
Confidence 34566777776 5 49999998 34 489999999999999887 7665
No 47
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.034 Score=36.59 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=38.9
Q ss_pred hhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 9 EKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 9 e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
++.|++- +.+|++|.|+.+....|-++.....+| ++-++....++
T Consensus 52 ~r~Gl~~--~s~RFlFdG~rI~~~~TP~~L~mEd~D------~Iev~~~q~gG 96 (99)
T KOG1769|consen 52 ERQGLSM--NSLRFLFDGQRIRETHTPADLEMEDGD------EIEVVQEQTGG 96 (99)
T ss_pred HHcCCcc--ceEEEEECCcCcCCCCChhhhCCcCCc------EEEEEeecccC
Confidence 4668876 999999999999999999999999999 88877765554
No 48
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=94.98 E-value=0.02 Score=37.08 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.0
Q ss_pred CCCCceEEEecceecCCcccccc
Q 034809 15 KTVNNVQLIHAGKILEDNMTIAE 37 (82)
Q Consensus 15 ~s~~~qrLI~~Gk~Led~~tL~~ 37 (82)
.+-..+||||+||.|.|...|+.
T Consensus 41 ~s~~rLRlI~~Gr~L~d~t~l~~ 63 (97)
T PF10302_consen 41 PSRRRLRLIYAGRLLNDHTDLSS 63 (97)
T ss_pred CccccEEeeecCcccCccchhhh
Confidence 33478999999999999988764
No 49
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.47 E-value=0.03 Score=34.19 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.4
Q ss_pred ceEEE-ecceecCCccccccCCCCCCCCCCCcEEEEE
Q 034809 19 NVQLI-HAGKILEDNMTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 19 ~qrLI-~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
..+|. -.|..|+++.||++++|.+|+ +++|
T Consensus 48 ~~~L~~~~g~~L~~~~tL~~~gV~dGd------~L~L 78 (79)
T PF08817_consen 48 QWVLARAGGRPLDPDQTLADAGVRDGD------VLVL 78 (79)
T ss_dssp -EEEG-GGTEEEETTSBCGGGT--TT-------EEEE
T ss_pred eEEEEecCCcccCCcCcHhHcCCCCCC------EEEe
Confidence 57787 889999999999999999999 7775
No 50
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=89.92 E-value=0.47 Score=31.16 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=25.9
Q ss_pred EEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 21 QLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 21 rLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
.|-|+||.|..+++|++| +-..+ -+.+-|-++..+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE----KtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE----KTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc----ceeEEEEeccCCC
Confidence 588999999999999999 65555 3455555544443
No 51
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=88.37 E-value=0.33 Score=32.28 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=26.6
Q ss_pred CCceEEEe-cc-eecCCccccccCCCCCCCC-CCCcEEEEE
Q 034809 17 VNNVQLIH-AG-KILEDNMTIAESRLPVVEL-PGTAITMHV 54 (82)
Q Consensus 17 ~~~qrLI~-~G-k~Led~~tL~~~~i~~g~~-p~~~~Tmhl 54 (82)
|+.|||.- .- ..|+|++||+|+|+..... |..+.++-|
T Consensus 39 vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 39 VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred CcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 49999977 33 6789999999998764332 334445554
No 52
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.61 Score=37.93 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=40.5
Q ss_pred CchhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 1 MNFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 1 ~~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
|+|..=.....|+|+ +.||++.-|+.|.|+--+....|..+. |+|++=
T Consensus 27 ~vlKaqlf~LTgV~P--eRQKv~vKGg~a~dd~~~~al~iKpn~------~lmMmG 74 (473)
T KOG1872|consen 27 SVLKAQLFALTGVPP--ERQKVMVKGGLAKDDVDWGALQIKPNE------TLMMMG 74 (473)
T ss_pred HHHHHHHHHhcCCCc--cceeEEEecccccccccccccccCCCC------EEEeec
Confidence 456667778899985 999999999999999888899998877 888753
No 53
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=80.00 E-value=2 Score=26.75 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=25.3
Q ss_pred cceecCCccccccCCCCCCCCCCCcEEEEEEeccCC
Q 034809 25 AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 25 ~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
+|..|+-++.+.||++..+- +++|.+..-.
T Consensus 45 ~G~vlD~~kKveD~Gftngv------kLFLsLKAGv 74 (76)
T PF10790_consen 45 SGQVLDVNKKVEDFGFTNGV------KLFLSLKAGV 74 (76)
T ss_pred CCcEeeccchhhhccccccc------eEEEEeeccc
Confidence 68899999999999999876 9998886543
No 54
>COG5417 Uncharacterized small protein [Function unknown]
Probab=79.84 E-value=3.8 Score=26.04 Aligned_cols=28 Identities=4% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCceEEEecceecCCccccccCCCCCCC
Q 034809 17 VNNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 17 ~~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
-..+|....++.|.++.-|++|+|..|+
T Consensus 49 g~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 49 GTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred CCEEEEeccceEecCCceEEeccccCCC
Confidence 3689999999999999999999999998
No 55
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.12 E-value=3.2 Score=30.91 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred hhcCCCCCCCceEEEecceecCCccccccCCCCCCC
Q 034809 9 EKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 9 e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
..+|+. |-.||.+|+|++|-|+.-|.+++|+.+.
T Consensus 178 Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 178 AAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred Hhhccc--hhhheeeccCCceeccccceeeeecCCC
Confidence 355665 3789999999999999999999999874
No 56
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=0.67 Score=36.67 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.5
Q ss_pred CCceEEEecceecCCccccccCCC
Q 034809 17 VNNVQLIHAGKILEDNMTIAESRL 40 (82)
Q Consensus 17 ~~~qrLI~~Gk~Led~~tL~~~~i 40 (82)
+.+|||||.||.|.|..-|+|.=+
T Consensus 51 ~~dqrliYsgkllld~qcl~d~lr 74 (391)
T KOG4583|consen 51 ELDQRLIYSGKLLLDHQCLTDWLR 74 (391)
T ss_pred hhhHHHHhhccccccchhHHHHHH
Confidence 578999999999999988877544
No 57
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=71.76 E-value=4.5 Score=32.33 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.2
Q ss_pred ecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 24 HAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 24 ~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
-+|..|+-+.||++.+|.+|| ++||..+....
T Consensus 53 ~gG~pL~~~~sL~~~gV~DG~------~L~L~p~~~~~ 84 (452)
T TIGR02958 53 AGGSPLDPDASLAEAGVRDGE------LLVLVPASATE 84 (452)
T ss_pred CCCCCCCCCCCHHHcCCCCCC------eEEEeeCCCCC
Confidence 467899999999999999999 99998854443
No 58
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=1.1 Score=29.46 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=25.6
Q ss_pred CceEEEecceecCCccccccCCCCCCC
Q 034809 18 NNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 18 ~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
+.+|++|.|+.++-+.|-+|++...++
T Consensus 63 ~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 63 SSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ceeEEEEcceecCCCCChhhcCCccch
Confidence 889999999999999999999999877
No 59
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=70.83 E-value=4.9 Score=28.15 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=24.9
Q ss_pred cceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 25 AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 25 ~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+-|..+|++||++.+++.|| -+.+.+-++.-.
T Consensus 110 g~Kg~ddnktL~~~kf~iGD------~lDVaI~~p~~~ 141 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGD------YLDVAITPPNRR 141 (151)
T ss_pred CcccCCccchhhhCCccccc------eEEEEecCcccC
Confidence 33455999999999999999 777777665443
No 60
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=67.32 E-value=4.1 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=18.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEec---ceec--CCccccccCCCCCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHA---GKIL--EDNMTIAESRLPVVE 44 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~---Gk~L--ed~~tL~~~~i~~g~ 44 (82)
+-+++++.-++|. +.+.|... ...| .++.||+++||..||
T Consensus 29 L~~kI~~~l~~~~--~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 29 LKEKISEQLSIPD--SSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp HHHHHHHHS---T--TT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred HHHHHHHHcCCCC--cceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 3456777777775 56666332 2234 578999999999999
No 61
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=66.13 E-value=18 Score=23.39 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=28.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+++-.+.+-++.- +.--+.....+|+++++|.|-+++- + |.+.+.+-+....+.+
T Consensus 18 Lk~lLe~Rl~~~L--~~~~f~LQD~~L~~~k~L~dQcVqg-e---GlVQlnvQi~s~~~~~ 72 (88)
T PF11620_consen 18 LKKLLERRLGISL--SDYEFWLQDIQLEPHKSLVDQCVQG-E---GLVQLNVQIKSNQGEP 72 (88)
T ss_dssp HHHHSHHHH-S----SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT--
T ss_pred HHHHHHHhhCCCc--CCCeEEeccceecCCccHHHhhccc-c---CEEEEEEEEEecCCCc
Confidence 4444555666665 5666667777799999999999984 3 4666666666665544
No 62
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=65.62 E-value=14 Score=21.97 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred hhhhhhhhcCCCCCCCceEEE--ecceecCCc--cccccCCCCCCCCCCCcEEEEE
Q 034809 3 FHIYLAEKENGPKTVNNVQLI--HAGKILEDN--MTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI--~~Gk~Led~--~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
+.+|++.....+. ....+|+ |--+.|.+. .||+|+++-... +|+|
T Consensus 32 l~~~v~~~~~~~~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~------~l~v 80 (82)
T PF00789_consen 32 LYDFVESQLFSPE-ESDFELITAFPRRELTDEDSKTLEEAGLLPSA------TLIV 80 (82)
T ss_dssp HHHHHHHHHHCTT-TSSEEEEESSSTEECCSTTTSBTCCCTTSSCE------EEEE
T ss_pred HHHHHHHhcCCCC-CccEEEEeCCCCcCCCccccccHHHhcCCCCe------EEEE
Confidence 3467766665554 1236775 667888654 699999887555 7766
No 63
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=62.39 E-value=9.8 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=17.0
Q ss_pred ceEEEeccee-cCCccccccCCCCCCC
Q 034809 19 NVQLIHAGKI-LEDNMTIAESRLPVVE 44 (82)
Q Consensus 19 ~qrLI~~Gk~-Led~~tL~~~~i~~g~ 44 (82)
++-.++.|+. -+|++||+++++..||
T Consensus 88 dlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 88 DLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp EEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred cCCeEECCCCCCCcccCHhhCCcccCC
Confidence 3445666665 4889999999999998
No 64
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=60.12 E-value=15 Score=22.39 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=28.9
Q ss_pred CceEEEecceecCCccccccCC-CCCCCCCCCcEEEEEEeccCC
Q 034809 18 NNVQLIHAGKILEDNMTIAESR-LPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 18 ~~qrLI~~Gk~Led~~tL~~~~-i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
....|.++|+.|+|...|++.. +..+. +|+|+..+-.
T Consensus 24 Tn~~L~~~g~~L~~~~el~~i~~~~~~~------~L~lve~pYt 61 (76)
T PF15044_consen 24 TNFSLEHNGQRLDDFVELSEIEGIKDGC------VLELVEEPYT 61 (76)
T ss_pred eEEEEEECCCccCCchhhhhhhCCCCCc------EEEEEecCCC
Confidence 4577899999999998888765 66555 9999876654
No 65
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=55.68 E-value=8.3 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=19.4
Q ss_pred CceEEEec---c--eecCCccccccCCCC
Q 034809 18 NNVQLIHA---G--KILEDNMTIAESRLP 41 (82)
Q Consensus 18 ~~qrLI~~---G--k~Led~~tL~~~~i~ 41 (82)
.+|||-|. | ..|.+..|||+|||=
T Consensus 38 g~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 38 GLQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred cceEEEeecCCcccccccccccHhhhcce
Confidence 68999984 2 356889999999995
No 66
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=51.51 E-value=41 Score=23.82 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=29.5
Q ss_pred hhhcCCCCCCCc-eEEEe-cceec--CCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 8 AEKENGPKTVNN-VQLIH-AGKIL--EDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 8 ~e~eg~P~s~~~-qrLI~-~Gk~L--ed~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
.+..++|. .. +-|.+ .|+.| +++..++.+.....+ ...++++|++++.|++
T Consensus 35 ~~~~~~~~--~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~--~~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 35 SERLPIPS--SSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD--SDFITLRLSLRLRGGK 89 (162)
T ss_pred HhhcCCCc--cceeEEEEeCCCeeCCCccccHHhhccCcCC--CCceEEEEEEeccCCC
Confidence 34455554 43 33444 34555 445555555443322 2478999999999986
No 67
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=46.61 E-value=26 Score=21.01 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=21.7
Q ss_pred hcCCCCCCCceEEEecceecCCccccccCCCCCCC
Q 034809 10 KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 10 ~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
+.++.. ++-.|.|++|.||-+-+..-.|++.|.
T Consensus 29 k~~l~~--~~~~L~h~~k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 29 KFGLDP--SSYDLKHNNKPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp HTT--G--GG-EEEETTEEESSS-BHHHH---SS-
T ss_pred HcCCCc--cceEEEECCEEeccccceeecCCCCCC
Confidence 456654 689999999999999999999999876
No 68
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=44.48 E-value=14 Score=22.88 Aligned_cols=11 Identities=18% Similarity=0.936 Sum_probs=8.6
Q ss_pred CCC-CceEEeeC
Q 034809 72 SSK-SRCLCSIL 82 (82)
Q Consensus 72 ~~~-~~C~C~i~ 82 (82)
.+. ++|+|+++
T Consensus 101 pp~h~nCRC~~i 112 (112)
T PF04233_consen 101 PPEHPNCRCTVI 112 (112)
T ss_pred CCCCCCCeeeeC
Confidence 345 89999985
No 69
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=44.23 E-value=26 Score=18.85 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=11.9
Q ss_pred CCCceEEEecceec
Q 034809 16 TVNNVQLIHAGKIL 29 (82)
Q Consensus 16 s~~~qrLI~~Gk~L 29 (82)
...++.++|+|+..
T Consensus 4 ~~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 4 ETAQLTIFYGGQVC 17 (36)
T ss_pred CCCcEEEEECCEEE
Confidence 35789999999987
No 70
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=38.85 E-value=63 Score=19.98 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecc--eecC--------CccccccCCCCCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAG--KILE--------DNMTIAESRLPVVE 44 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~G--k~Le--------d~~tL~~~~i~~g~ 44 (82)
+.+|+...... |...+|+++= |.++ .+.||.|.|+....
T Consensus 30 l~~fv~~~~~~---~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~ 78 (85)
T cd01774 30 IHDFLFSLKET---PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSE 78 (85)
T ss_pred HHHHHHhCCCC---CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCcc
Confidence 45677544333 3778888766 7885 36799999998544
No 71
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=37.96 E-value=62 Score=19.66 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=25.1
Q ss_pred hhhhhhhhcCCCCCCCceEEE--ecceecC-CccccccCCCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLI--HAGKILE-DNMTIAESRLPV 42 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI--~~Gk~Le-d~~tL~~~~i~~ 42 (82)
+.+|+....+.+. .....|+ |=.|.|. ++.||.|.|+..
T Consensus 30 l~~~v~~~~~~~~-~~~f~L~t~fP~k~l~~~~~Tl~eagL~~ 71 (79)
T cd01770 30 VRDFIVNARPEFA-ARPFTLMTAFPVKELSDESLTLKEANLLN 71 (79)
T ss_pred HHHHHHHhCCCCC-CCCEEEecCCCCcccCCCCCcHHHCCCcC
Confidence 4567775443221 1345665 6688784 488999999985
No 72
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=35.49 E-value=54 Score=20.37 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=13.2
Q ss_pred eEEEeccee----cCCccccccCCCCCCC
Q 034809 20 VQLIHAGKI----LEDNMTIAESRLPVVE 44 (82)
Q Consensus 20 qrLI~~Gk~----Led~~tL~~~~i~~g~ 44 (82)
-++||..-. -..+++|+++||..|+
T Consensus 34 ~~ilyd~de~~~~~~l~k~L~elgi~~gs 62 (87)
T PF14732_consen 34 GTILYDSDEEEYDDNLPKKLSELGIVNGS 62 (87)
T ss_dssp -EEEE-SSSSSSTTCTTSBGGGGT--TT-
T ss_pred CCEEEcCCcchhhhcccCChhHcCCCCCC
Confidence 345554443 1236799999999887
No 73
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.27 E-value=17 Score=30.17 Aligned_cols=35 Identities=37% Similarity=0.419 Sum_probs=30.5
Q ss_pred hhhhhcCCCCCCCceEEEecceecCCccccccCCCCC
Q 034809 6 YLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPV 42 (82)
Q Consensus 6 w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~ 42 (82)
-+..+-||+. +.+|.|.+||+|.-.+||++-|+..
T Consensus 68 ~iakklgi~e--nhvKci~~~Kils~~ktlaeQglk~ 102 (568)
T KOG2561|consen 68 LIAKKLGIKE--NHVKCIINGKILSCRKTLAEQGLKI 102 (568)
T ss_pred HHHHHcCCch--hhhheeeccceeecccchhhhhhhh
Confidence 3556788998 7999999999999999999998874
No 74
>PF13889 Chromosome_seg: Chromosome segregation during meiosis
Probab=33.13 E-value=31 Score=20.43 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=13.0
Q ss_pred CceEEEecceecCCcc
Q 034809 18 NNVQLIHAGKILEDNM 33 (82)
Q Consensus 18 ~~qrLI~~Gk~Led~~ 33 (82)
+++|+||+-|.+|-++
T Consensus 23 ~dIRvvF~~r~~d~de 38 (56)
T PF13889_consen 23 TDIRVVFARRSPDSDE 38 (56)
T ss_pred CCeEEEEeccCCCCCc
Confidence 5899999999986544
No 75
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.36 E-value=95 Score=25.04 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=30.9
Q ss_pred EecceecCCccccccCCCCCC---CCCCCcEEEEEEeccCCCccc
Q 034809 23 IHAGKILEDNMTIAESRLPVV---ELPGTAITMHVVLRPSLPDKK 64 (82)
Q Consensus 23 I~~Gk~Led~~tL~~~~i~~g---~~p~~~~Tmhlv~~~~~~~kk 64 (82)
||+++.+-...-|..-+.... .+|+.+++||++++..+++..
T Consensus 16 iYa~~~i~s~~llvagggg~~~~~~~~n~vssl~~~~~~g~~~~~ 60 (398)
T KOG0771|consen 16 IYAAKWINSRHLLVAGGGGQAAKTGIGNSVSSLHLVLTGGGGKGR 60 (398)
T ss_pred eEEEEeeCCCceEEEeccCcccccCCCCcceeEEEEecCCCcccc
Confidence 789999887777766665433 457888899999987666543
No 76
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=25.91 E-value=23 Score=27.57 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred hcCCCCCCCceE-----EEecceecCCccccccCCCC
Q 034809 10 KENGPKTVNNVQ-----LIHAGKILEDNMTIAESRLP 41 (82)
Q Consensus 10 ~eg~P~s~~~qr-----LI~~Gk~Led~~tL~~~~i~ 41 (82)
.+++|. +.++ |+|.-|.+-|++||+|.--.
T Consensus 126 ~~~vp~--dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 126 ETRVPL--DKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp -------------------------------------
T ss_pred cccCCH--HHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 678887 8889 99999999999999987654
No 77
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=24.57 E-value=40 Score=25.82 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=25.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIA 36 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~ 36 (82)
+++-+.+--+++. +.|++.|.|.+|-|+++++
T Consensus 309 ~k~k~~~~~~i~~--~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 309 LKEKIADESQIPA--NKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred cccccccccccch--hheeeccCCcccCcccccc
Confidence 3455667778886 9999999999998887664
No 78
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=24.18 E-value=57 Score=22.16 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=12.9
Q ss_pred CCccccccCCCCCCC
Q 034809 30 EDNMTIAESRLPVVE 44 (82)
Q Consensus 30 ed~~tL~~~~i~~g~ 44 (82)
++++||+++||..+.
T Consensus 87 ~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 87 DDDKTLKELGVENET 101 (122)
T ss_pred CCCCcHHHcCCCccc
Confidence 789999999998653
No 79
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=21.99 E-value=1.4e+02 Score=17.55 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=23.3
Q ss_pred hhhhhhhhcCCCCCCCceEE--EecceecCC---ccccccCCCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQL--IHAGKILED---NMTIAESRLPV 42 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrL--I~~Gk~Led---~~tL~~~~i~~ 42 (82)
+.+|+....+... ...+| -|--|.|.+ +.||.|.++-.
T Consensus 30 v~~~v~~~~~~~~--~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p 72 (80)
T smart00166 30 VYEFVSAALTDGN--DPFTLNSPFPRRTFTKDDYSKTLLELALLP 72 (80)
T ss_pred HHHHHHHcccCCC--CCEEEEeCCCCcCCccccccCCHHHCCCCC
Confidence 4567744444443 34555 466777854 47999998753
Done!