Query 034809
Match_columns 82
No_of_seqs 108 out of 276
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 2.6E-31 8.9E-36 178.5 7.0 78 3-82 48-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 99.9 4.5E-25 1.5E-29 147.4 6.5 75 3-82 48-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.8 4.7E-20 1.6E-24 121.7 7.4 61 3-67 47-108 (116)
4 3u5c_f 40S ribosomal protein S 99.6 2.4E-16 8.2E-21 107.7 0.9 63 3-73 26-88 (152)
5 4ajy_B Transcription elongatio 99.5 4.9E-15 1.7E-19 98.5 4.7 56 2-59 26-82 (118)
6 3phx_B Ubiquitin-like protein 99.5 9.3E-15 3.2E-19 87.6 5.5 50 3-60 30-79 (79)
7 2fnj_B Transcription elongatio 99.5 5.4E-15 1.9E-19 98.1 4.0 47 3-57 27-80 (118)
8 1wju_A NEDD8 ultimate buster-1 99.5 8.7E-15 3E-19 94.6 4.7 52 3-63 45-96 (100)
9 4fbj_B NEDD8; effector-HOST ta 99.5 2.1E-14 7.2E-19 88.6 4.8 54 3-64 26-79 (88)
10 2uyz_B Small ubiquitin-related 99.5 1.7E-14 5.9E-19 86.4 4.2 51 3-61 29-79 (79)
11 2kan_A Uncharacterized protein 99.5 2.6E-14 9E-19 89.8 5.0 53 3-63 40-93 (94)
12 2lxa_A Ubiquitin-like protein 99.5 2.4E-14 8.1E-19 89.7 4.3 51 3-61 29-81 (87)
13 1wyw_B Ubiquitin-like protein 99.5 3E-14 1E-18 89.6 4.7 51 3-61 47-97 (97)
14 1we7_A SF3A1 protein; structur 99.5 4.4E-14 1.5E-18 91.2 5.5 54 3-64 61-114 (115)
15 2faz_A Ubiquitin-like containi 99.5 6.1E-14 2.1E-18 83.6 5.3 49 3-59 30-78 (78)
16 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 7.1E-14 2.4E-18 86.4 5.5 55 3-65 27-81 (96)
17 1ndd_A NEDD8, protein (ubiquit 99.5 1E-13 3.4E-18 81.3 5.4 51 3-61 26-76 (76)
18 3plu_A Ubiquitin-like modifier 99.5 6E-14 2E-18 89.9 4.6 46 2-55 46-91 (93)
19 1wgd_A Homocysteine-responsive 99.4 6.7E-14 2.3E-18 86.8 4.6 53 3-63 35-91 (93)
20 3dbh_I NEDD8; cell cycle, acti 99.4 6.3E-14 2.1E-18 84.9 4.4 51 3-61 38-88 (88)
21 4dwf_A HLA-B-associated transc 99.4 9.4E-14 3.2E-18 85.1 5.1 52 3-63 31-82 (90)
22 1wy8_A NP95-like ring finger p 99.4 1.2E-13 4E-18 84.4 5.4 52 3-62 35-86 (89)
23 2l7r_A Ubiquitin-like protein 99.4 6.7E-14 2.3E-18 87.4 4.3 51 3-61 43-93 (93)
24 3rt3_B Ubiquitin-like protein 99.4 1.1E-13 3.7E-18 92.3 5.4 52 3-62 107-158 (159)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 99.4 1.2E-13 4.2E-18 83.8 5.0 52 3-62 33-84 (87)
26 3n3k_B Ubiquitin; hydrolase, p 99.4 1.7E-13 5.6E-18 82.4 5.3 52 3-62 29-80 (85)
27 2kk8_A Uncharacterized protein 99.4 8.1E-14 2.8E-18 86.0 3.9 48 3-58 36-84 (84)
28 2hj8_A Interferon-induced 17 k 99.4 6.3E-14 2.2E-18 86.3 3.3 53 3-63 30-82 (88)
29 4eew_A Large proline-rich prot 99.4 1.4E-13 4.7E-18 84.0 4.7 46 3-57 43-88 (88)
30 4hcn_B Polyubiquitin, ubiquiti 99.4 1.5E-13 5.1E-18 86.2 4.7 51 3-61 48-98 (98)
31 1we6_A Splicing factor, putati 99.4 2.1E-13 7.3E-18 87.3 5.3 53 3-63 57-109 (111)
32 3a9j_A Ubiquitin; protein comp 99.4 3.9E-13 1.3E-17 78.8 5.6 51 3-61 26-76 (76)
33 3l0w_B Monoubiquitinated proli 99.4 3.6E-13 1.2E-17 92.6 6.1 55 3-65 26-80 (169)
34 3v6c_B Ubiquitin; structural g 99.4 2.9E-13 9.9E-18 83.5 4.9 49 3-59 43-91 (91)
35 1sif_A Ubiquitin; hydrophobic 99.4 2.7E-13 9.2E-18 83.6 4.5 52 3-62 35-86 (88)
36 3mtn_B UBA80, ubcep1, ubiquiti 99.4 4.3E-13 1.5E-17 80.4 5.1 52 3-62 29-80 (85)
37 2kdb_A Homocysteine-responsive 99.4 1.3E-13 4.4E-18 88.2 2.9 46 3-55 51-99 (99)
38 4a20_A Ubiquitin-like protein 99.4 5.3E-13 1.8E-17 85.2 5.7 49 3-59 47-97 (98)
39 1uel_A HHR23B, UV excision rep 99.4 9.4E-13 3.2E-17 82.1 6.4 52 3-62 26-80 (95)
40 1uh6_A Ubiquitin-like 5; beta- 99.4 1.9E-13 6.6E-18 88.2 3.2 46 3-56 54-99 (100)
41 3m62_B UV excision repair prot 99.4 5.2E-13 1.8E-17 85.3 4.9 51 3-61 27-77 (106)
42 2wyq_A HHR23A, UV excision rep 99.4 7.6E-13 2.6E-17 79.8 5.4 49 3-59 31-82 (85)
43 2dzi_A Ubiquitin-like protein 99.4 4.9E-13 1.7E-17 79.7 4.4 49 3-59 33-81 (81)
44 3vdz_A Ubiquitin-40S ribosomal 99.4 8.8E-13 3E-17 84.8 5.4 51 3-61 61-111 (111)
45 1wx8_A Riken cDNA 4931431F19; 99.4 2.3E-13 7.9E-18 84.5 2.5 52 3-62 42-93 (96)
46 1yqb_A Ubiquilin 3; structural 99.4 7.1E-13 2.4E-17 84.0 4.7 52 3-62 47-98 (100)
47 4b6w_A Tubulin-specific chaper 99.3 6.8E-13 2.3E-17 82.7 4.4 49 3-59 30-85 (86)
48 3b1l_X E3 ubiquitin-protein li 99.0 7.8E-14 2.7E-18 82.7 0.0 50 3-60 26-75 (76)
49 3u30_A Ubiquitin, linear DI-ub 99.3 4.4E-13 1.5E-17 90.7 3.7 51 3-61 122-172 (172)
50 2bwf_A Ubiquitin-like protein 99.3 1.4E-12 4.7E-17 77.1 5.3 48 3-58 29-76 (77)
51 2kdi_A Ubiquitin, vacuolar pro 99.3 1.4E-12 4.8E-17 84.4 5.7 52 3-62 35-86 (114)
52 1yx5_B Ubiquitin; proteasome, 99.3 2.1E-12 7.3E-17 80.5 5.7 54 3-64 26-79 (98)
53 1wx7_A Ubiquilin 3; ubiquitin- 99.3 2.5E-12 8.6E-17 81.6 6.0 53 3-63 42-94 (106)
54 1j8c_A Ubiquitin-like protein 99.3 1.6E-12 5.6E-17 85.6 5.3 53 3-63 57-109 (125)
55 1ttn_A DC-UBP, dendritic cell- 99.3 1.6E-12 5.5E-17 82.7 5.0 51 3-61 49-99 (106)
56 1x1m_A Ubiquitin-like protein 99.3 1.9E-12 6.7E-17 82.6 5.4 50 3-60 50-102 (107)
57 2xzm_9 RPS31E; ribosome, trans 99.3 2.8E-13 9.7E-18 95.8 1.2 54 2-68 25-78 (189)
58 2ojr_A Ubiquitin; lanthide-bin 99.3 3.2E-12 1.1E-16 81.9 5.8 51 3-61 61-111 (111)
59 3b08_A Polyubiquitin-C, ubiqui 99.3 2.9E-12 1E-16 83.6 5.5 51 3-61 102-152 (152)
60 3m63_B Ubiquitin domain-contai 99.3 1.5E-12 5E-17 82.8 3.9 48 3-58 53-100 (101)
61 2klc_A Ubiquilin-1; ubiquitin- 99.3 3.7E-12 1.2E-16 80.7 5.6 50 3-60 50-99 (101)
62 4dbg_A Ranbp-type and C3HC4-ty 99.3 3.3E-12 1.1E-16 83.1 5.0 48 3-58 52-100 (105)
63 3u5e_m 60S ribosomal protein L 99.3 3.3E-13 1.1E-17 88.5 0.1 53 3-63 26-78 (128)
64 2daf_A FLJ35834 protein; hypot 99.3 3.5E-12 1.2E-16 84.8 4.7 52 4-63 43-94 (118)
65 3q3f_A Ribonuclease/ubiquitin 99.3 2.9E-12 9.9E-17 90.2 4.5 53 3-63 131-183 (189)
66 1v5o_A 1700011N24RIK protein; 99.3 2.3E-12 7.9E-17 81.5 3.3 52 3-62 37-89 (102)
67 2kd0_A LRR repeats and ubiquit 99.2 6.9E-12 2.4E-16 77.1 4.7 48 3-58 37-84 (85)
68 3u30_A Ubiquitin, linear DI-ub 99.2 1.1E-11 3.8E-16 83.8 5.6 51 3-61 46-96 (172)
69 1wia_A Hypothetical ubiquitin- 99.2 1.4E-11 4.8E-16 76.3 4.8 48 4-62 34-82 (95)
70 1v2y_A 3300001G02RIK protein; 99.2 1.7E-12 5.8E-17 84.2 0.1 53 3-61 33-99 (105)
71 1wxv_A BAG-family molecular ch 99.2 2.1E-11 7.3E-16 75.1 4.5 51 3-61 37-88 (92)
72 2kjr_A CG11242; UBL, ubiquitin 99.2 2.3E-11 8E-16 77.0 3.9 45 3-55 43-93 (95)
73 3rt3_B Ubiquitin-like protein 99.1 4.5E-11 1.5E-15 79.5 5.4 48 3-58 28-77 (159)
74 3b08_A Polyubiquitin-C, ubiqui 99.1 5.8E-11 2E-15 77.4 5.6 51 3-61 26-76 (152)
75 2kj6_A Tubulin folding cofacto 99.1 2E-11 7E-16 77.7 3.3 46 3-56 42-94 (97)
76 1wgg_A Ubiquitin carboxyl-term 99.1 3.3E-11 1.1E-15 75.8 4.2 48 3-59 33-80 (96)
77 2dzm_A FAS-associated factor 1 99.1 2.1E-11 7.1E-16 78.3 2.5 52 2-62 33-86 (100)
78 1v5t_A 8430435I17RIK protein; 99.1 9.7E-11 3.3E-15 72.5 4.0 48 3-58 33-83 (90)
79 2io1_B Small ubiquitin-related 99.0 2E-10 6.8E-15 72.6 4.4 48 7-62 37-84 (94)
80 1v6e_A Cytoskeleton-associated 99.0 1.4E-10 4.6E-15 72.5 3.5 46 3-56 34-86 (95)
81 2dzj_A Synaptic glycoprotein S 99.0 1.2E-10 4E-15 72.6 2.9 44 3-54 39-85 (88)
82 3ai5_A Yeast enhanced green fl 99.0 2.4E-10 8.2E-15 85.6 4.5 48 3-58 259-306 (307)
83 1oqy_A HHR23A, UV excision rep 99.0 3.3E-10 1.1E-14 86.4 5.2 52 3-62 33-88 (368)
84 1v86_A DNA segment, CHR 7, way 98.9 2E-10 7E-15 71.9 1.8 47 3-58 42-88 (95)
85 2io0_B Small ubiquitin-related 98.9 2.2E-09 7.4E-14 67.5 5.4 47 8-62 36-82 (91)
86 1t0y_A Tubulin folding cofacto 98.9 1.2E-09 4E-14 71.3 4.2 47 3-57 33-86 (122)
87 2d07_B Ubiquitin-like protein 98.9 2E-09 6.7E-14 67.6 4.5 46 8-61 48-93 (93)
88 1wz0_A Ubiquitin-like protein 98.8 3.5E-09 1.2E-13 68.2 3.4 47 8-62 55-101 (104)
89 2eke_C Ubiquitin-like protein 98.8 6.4E-09 2.2E-13 67.4 4.5 46 8-61 61-106 (106)
90 1wm3_A Ubiquitin-like protein 98.8 7.5E-09 2.6E-13 61.8 4.2 41 8-56 32-72 (72)
91 1wf9_A NPL4 family protein; be 98.7 3.6E-09 1.2E-13 67.5 2.0 48 3-58 33-95 (107)
92 2k8h_A Small ubiquitin protein 98.7 7.5E-09 2.6E-13 67.4 2.3 46 8-61 57-102 (110)
93 3a4r_A Nfatc2-interacting prot 98.6 2.3E-08 8E-13 60.9 3.8 40 8-55 39-78 (79)
94 3shq_A UBLCP1; phosphatase, hy 98.6 2.5E-08 8.5E-13 74.5 2.6 49 3-59 30-81 (320)
95 2kzr_A Ubiquitin thioesterase 98.5 5.6E-08 1.9E-12 59.4 3.3 47 3-57 26-77 (86)
96 3pge_A SUMO-modified prolifera 98.4 4.5E-07 1.5E-11 64.4 5.2 50 8-65 59-108 (200)
97 3kyd_D Small ubiquitin-related 98.2 3.5E-06 1.2E-10 55.3 5.5 44 8-59 71-114 (115)
98 3tix_A Ubiquitin-like protein 98.0 4E-06 1.4E-10 60.1 3.7 49 8-64 87-135 (207)
99 1wjn_A Tubulin-folding protein 97.9 1.9E-05 6.6E-10 48.8 5.4 48 3-58 38-93 (97)
100 3v7o_A Minor nucleoprotein VP3 97.7 4.3E-06 1.5E-10 60.6 0.1 47 8-62 51-97 (227)
101 4efo_A Serine/threonine-protei 97.7 3.6E-05 1.2E-09 49.0 4.0 48 2-52 38-85 (94)
102 3goe_A DNA repair protein RAD6 97.2 0.00057 2E-08 42.7 4.9 39 10-56 42-81 (82)
103 3ix6_A TS, tsase, thymidylate 97.2 6E-05 2.1E-09 57.6 -0.1 48 8-63 51-98 (360)
104 3uf8_A Ubiquitin-like protein 97.1 0.00064 2.2E-08 47.6 4.5 46 8-61 51-96 (209)
105 4da1_A Protein phosphatase 1K, 96.6 0.00034 1.2E-08 52.3 0.0 48 8-63 60-107 (389)
106 2jxx_A Nfatc2-interacting prot 96.5 0.0024 8.1E-08 40.4 3.6 38 9-54 58-95 (97)
107 2l76_A Nfatc2-interacting prot 95.9 0.0089 3.1E-07 38.0 3.8 41 8-56 51-91 (95)
108 2bps_A YUKD protein; ubiquitin 90.3 0.18 6.1E-06 30.9 2.4 27 18-44 50-76 (81)
109 3qx1_A FAS-associated factor 1 87.8 0.74 2.5E-05 27.2 3.9 44 3-55 33-81 (84)
110 2pjh_A Protein NPL4, nuclear p 86.5 0.3 1E-05 29.1 1.6 44 4-55 30-78 (80)
111 2kc2_A Talin-1, F1; FERM, adhe 77.1 1.2 4E-05 29.3 1.9 26 19-44 88-115 (128)
112 3eud_A Protein SHQ1; CS domain 72.9 4 0.00014 26.5 3.6 33 17-54 60-92 (115)
113 3onh_A Ubiquitin-activating en 67.1 5.8 0.0002 26.2 3.4 26 19-44 46-72 (127)
114 2juo_A GA-binding protein alph 65.0 22 0.00076 22.1 5.9 53 3-61 18-70 (89)
115 4e71_A Plexin-B2, MM1; transme 62.6 3.5 0.00012 26.6 1.6 18 34-57 93-110 (111)
116 4a6q_A Histone deacetylase com 62.1 6.3 0.00022 26.4 2.9 32 22-59 108-140 (143)
117 4e74_A Plexin-A4; RBD, structu 59.4 4.7 0.00016 26.1 1.9 19 34-58 97-115 (117)
118 1wj4_A KIAA0794 protein; UBX d 58.4 14 0.00048 23.4 4.0 45 3-56 69-118 (124)
119 3ivf_A Talin-1; FERM domain, c 57.3 9.2 0.00032 27.8 3.4 27 18-44 45-77 (371)
120 3h6n_A Plexin-D1; structural g 55.0 8.3 0.00028 25.4 2.5 20 33-58 86-105 (127)
121 2al3_A TUG long isoform; TUG U 49.6 29 0.00099 21.4 4.3 41 10-58 42-82 (90)
122 2dzk_A UBX domain-containing p 47.7 21 0.00071 22.0 3.5 47 3-57 39-90 (109)
123 2cr5_A Reproduction 8; UBX dom 45.2 32 0.0011 21.0 4.1 45 3-56 49-97 (109)
124 3kuz_A Plexin-C1; structural g 41.7 16 0.00053 24.0 2.2 16 34-55 109-124 (126)
125 2r2o_A Plexin-B1; effector dom 40.3 13 0.00044 24.8 1.6 20 34-59 111-130 (138)
126 2vq5_A S-norcoclaurine synthas 39.6 11 0.00037 26.0 1.2 20 18-37 3-22 (201)
127 4eut_A Serine/threonine-protei 38.4 46 0.0016 23.6 4.5 29 3-33 337-366 (396)
128 2inc_C TOUB protein; DIIRON, 4 37.5 69 0.0024 19.5 5.0 26 19-44 48-75 (83)
129 3ge3_C Toluene-4-monooxygenase 35.6 58 0.002 19.9 4.0 28 17-44 47-76 (84)
130 3jyu_A Ubiquitin carboxyl-term 34.6 88 0.003 21.4 5.4 41 10-58 174-221 (231)
131 4a3p_A Ubiquitin carboxyl-term 33.4 60 0.0021 22.0 4.3 33 10-44 162-201 (217)
132 2k6p_A Uncharacterized protein 26.5 24 0.00082 20.5 1.1 43 1-44 1-45 (92)
133 2k8q_A Protein SHQ1; beta-sand 23.2 82 0.0028 20.6 3.3 28 17-44 46-73 (134)
134 2jtd_A Myomesin-1, skelemin; i 22.0 59 0.002 21.7 2.4 51 4-62 56-106 (142)
135 1s3s_G P47 protein; AAA ATPase 21.6 62 0.0021 20.4 2.4 38 3-42 78-119 (127)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.97 E-value=2.6e-31 Score=178.53 Aligned_cols=78 Identities=42% Similarity=0.766 Sum_probs=59.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccccccCCCCC-CceEEee
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSSK-SRCLCSI 81 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k~~~~~~~-~~C~C~i 81 (82)
+++||+|+||+|+++++|||||+||+|+|++||++|+|+.+++|++++|||||+|+.+++++ |+.+..++ ++|+|+|
T Consensus 48 ~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g~~kk--kk~~~~pkk~~C~C~I 125 (126)
T 1se9_A 48 ISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE--KKPKGDPKMNKCVCSV 125 (126)
T ss_dssp HHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSSCCC--C---------------
T ss_pred HhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCCcccc--ccCCCCCCCCCceEEe
Confidence 67899999999988899999999999999999999999999999999999999999998876 66677777 9999999
Q ss_pred C
Q 034809 82 L 82 (82)
Q Consensus 82 ~ 82 (82)
|
T Consensus 126 l 126 (126)
T 1se9_A 126 M 126 (126)
T ss_dssp -
T ss_pred C
Confidence 7
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.91 E-value=4.5e-25 Score=147.38 Aligned_cols=75 Identities=28% Similarity=0.550 Sum_probs=65.1
Q ss_pred hhhhhhh-hcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccc-cccCCCCC-CceEE
Q 034809 3 FHIYLAE-KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGE-KLLSDSSK-SRCLC 79 (82)
Q Consensus 3 ~~~w~~e-~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~-k~~~~~~~-~~C~C 79 (82)
+++||+| +||+|.+|++|||||+||+|+|++||++|+|+.++ .+||||++|+.+++++++ +.....++ ++| |
T Consensus 48 ~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~----~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C 122 (125)
T 2gow_A 48 YDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK----TTVMHLVARETLPEPNSQGQRNREKTGESNC-C 122 (125)
T ss_dssp HSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS----EEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-C
T ss_pred HHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC----ceEEEEEecCCCCccccccccccCCCCCCCc-c
Confidence 5689999 79998778999999999999999999999999877 679999999999988865 44445555 899 9
Q ss_pred eeC
Q 034809 80 SIL 82 (82)
Q Consensus 80 ~i~ 82 (82)
+||
T Consensus 123 ~il 125 (125)
T 2gow_A 123 VIL 125 (125)
T ss_dssp CCC
T ss_pred EeC
Confidence 997
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=4.7e-20 Score=121.74 Aligned_cols=61 Identities=26% Similarity=0.497 Sum_probs=53.5
Q ss_pred hhhhhhh-hcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcccccc
Q 034809 3 FHIYLAE-KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEK 67 (82)
Q Consensus 3 ~~~w~~e-~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k 67 (82)
+++||+| +|++|..|++|||||+||+|+|++||++|+|+.++ .+||||++|+..++++++.
T Consensus 47 ~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~----~~tlhLvlr~~~~~~~~~~ 108 (116)
T 1wgh_A 47 YDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK----TTVMHLVARETLPEPNSQG 108 (116)
T ss_dssp HHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC----EEEEEEEECSSCSSSCCSS
T ss_pred HHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC----ceEEEEEccCCCCCCCccc
Confidence 5679999 78987557999999999999999999999998776 5799999999999877543
No 4
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.57 E-value=2.4e-16 Score=107.68 Aligned_cols=63 Identities=30% Similarity=0.397 Sum_probs=3.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccccccCCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKLLSDSS 73 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k~~~~~~ 73 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|+.++ ||||++++.+++||++|+....|
T Consensus 26 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~dygI~~gs------tL~Lvlrl~GGgKkrkKk~~t~P 88 (152)
T 3u5c_f 26 VKSKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGGKKRKXXXXXXX 88 (152)
T ss_dssp ----------------------------------------------------------------CCCCCCC
T ss_pred HHHHHHHHhCCCH--HHEEEEECCEEccccCcHHHcCCCCCC------EEEEEeeccCCCcCccccccccc
Confidence 4567788999996 999999999999999999999999998 99999999999988877655544
No 5
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.54 E-value=4.9e-15 Score=98.47 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=46.3
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCC-CCCcEEEEEEeccC
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAITMHVVLRPS 59 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~-p~~~~Tmhlv~~~~ 59 (82)
++.+-+++++|+|+ ++|||||+||+|+|++||++|||+.+.. |....|+||++|..
T Consensus 26 ~lK~kI~~~~giPp--~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~ 82 (118)
T 4ajy_B 26 ELKRIVEGILKRPP--DEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD 82 (118)
T ss_dssp HHHHHHHHHHCCCG--GGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECCS
T ss_pred HHHHHHHHHHCCCH--HHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEecC
Confidence 35677899999996 9999999999999999999999998211 22334999999973
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.54 E-value=9.3e-15 Score=87.60 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=45.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|..++ |+||++|+.|
T Consensus 30 lK~~i~~~~gip~--~~qrL~~~G~~L~d~~tL~~~~i~~~~------~l~l~~rl~G 79 (79)
T 3phx_B 30 LKQQVSGLEGVQD--DLFWLTFEGKPLEDQLPLGEYGLKPLS------TVFMNLRLRG 79 (79)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTSBGGGGTCCTTC------EEEEEECCBC
T ss_pred HHHHHHhhcCCCH--HHEEEEECCEECCCCCcHHHCCCCCCC------EEEEEEecCC
Confidence 4566788999996 999999999999999999999999999 9999999865
No 7
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.52 E-value=5.4e-15 Score=98.07 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=43.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCC-------CCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLP-------VVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~-------~g~~p~~~~Tmhlv~~ 57 (82)
+.+-+++++|+|+ ++|||||+||+|+|++||++|||+ .++ |+||++|
T Consensus 27 lK~kI~~~egIP~--~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~s------tL~L~lr 80 (118)
T 2fnj_B 27 LKRIVEGILKRPP--EEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA------TVGLAFR 80 (118)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCE------EEEEEEB
T ss_pred HHHHHHHHhCCCH--HHeEEEECCeECCCCCCHHHcCcccccccCCCCC------EEEEEec
Confidence 5677899999996 999999999999999999999999 455 9999999
No 8
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=8.7e-15 Score=94.58 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=45.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++++|+|+ ++|||||+||+|+|++||++|+|+.++ |+ +++++.+.+.
T Consensus 45 lK~kI~~k~gip~--~qQrLI~~GKiL~D~~TL~~y~I~~gs------ti-~vl~lrg~~~ 96 (100)
T 1wju_A 45 LRSKIAETFGLQE--NYIKIVINKKQLQLGKTLEEQGVAHNV------KA-MVLELKQSSG 96 (100)
T ss_dssp HHHHHHHHTTCCS--TTCEEEETTEECCTTSBHHHHTCCSSE------EE-EEECCCCCCC
T ss_pred HHHHHHHHHCcCH--HHeEEEeCCeECCCCCcHHHcCCCCCC------EE-EEEEECCCCc
Confidence 5677899999996 999999999999999999999999998 88 6677666654
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.50 E-value=2.1e-14 Score=88.62 Aligned_cols=54 Identities=26% Similarity=0.272 Sum_probs=45.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 64 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk 64 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|..++ |+||++++.++..-
T Consensus 26 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 26 IKERVEEKEGIPP--QQQRLIYSGKQMNDEKTAADYKILGGS------VLHLVLALRGGGGL 79 (88)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCTTSBTTTTTCCTTC------EEEEECBCC-----
T ss_pred HHHHHHHHHCcCh--hHEEEEECCeECCCCCcHHHcCCCCCC------EEEEEEECCCCCCC
Confidence 4567888999996 999999999999999999999999999 99999999998653
No 10
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.49 E-value=1.7e-14 Score=86.42 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=45.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++++|+|+ ++|||||+|+.|+|++||++|+|..++ |+||+++..|+
T Consensus 29 lk~~i~~~~gi~~--~~qrL~~~G~~L~d~~tl~~~~i~~~~------~i~l~~~~~GG 79 (79)
T 2uyz_B 29 LKESYCQRQGVPM--NSLRFLFEGQRIADNHTPKELGMEEED------VIEVYQEQTGG 79 (79)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTCCHHHHTCCTTE------EEEEEECCCC-
T ss_pred HHHHHHHHHCCCc--ccEEEEECCEEeCCCCCHHHcCCCCCC------EEEEEEeccCC
Confidence 3456788999996 999999999999999999999999999 99999998775
No 11
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=2.6e-14 Score=89.77 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=48.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCc-cccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~-~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+ +||++|+|..++ ||||++++.++++
T Consensus 40 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~~tL~~ygI~~gs------tl~lv~r~~gg~~ 93 (94)
T 2kan_A 40 LKDKIHIVENTPI--KRMQLYYSGIELADDYRNLNEYGITEFS------EIVVFLKSINRAK 93 (94)
T ss_dssp HHHHHHHHSSSCT--TTEEEEETTEEECCTTSBHHHHTCCTTE------EEEEEECCCSSCC
T ss_pred HHHHHHHHHCcCH--HHEEEEECCEECCCCcccHHHCCCCCCC------EEEEEEeCCCCCC
Confidence 5677889999996 999999999999999 999999999988 9999999998864
No 12
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.4e-14 Score=89.75 Aligned_cols=51 Identities=25% Similarity=0.554 Sum_probs=45.3
Q ss_pred hhhhh-hhhcCCCCCCCceEEEecceecCCccccccCCC-CCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYL-AEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~-~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i-~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+ ++++|+|+ ++|||||+||+|+|+.||++|+| +.++ |+||+++++..
T Consensus 29 lK~~I~~~~~gip~--~~QrLi~~Gk~L~D~~tL~~y~I~~~~s------tl~v~~~~~~~ 81 (87)
T 2lxa_A 29 IKQHLISEEKASHI--SEIKLLLKGKVLHDNLFLSDLKVTPANS------TITVMIKPNLE 81 (87)
T ss_dssp HHHHHHHTTSCSSS--TTEEEEETTEECCTTCBHHHHCCCGGGC------EEEEEECCCCC
T ss_pred HHHHHHHHhcCCCh--HHEEEEECCEECcCcCCHHHcCCCCCCC------EEEEEcCCCcc
Confidence 45667 88999996 99999999999999999999999 6777 99999988754
No 13
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.48 E-value=3e-14 Score=89.58 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=46.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++++|+|+ ++|||||+|+.|+|++||++|+|+.++ |+||++++.|+
T Consensus 47 lK~~i~~~~gip~--~~qrLif~Gk~L~d~~tl~dy~i~~g~------~I~l~~~~~GG 97 (97)
T 1wyw_B 47 LKESYCQRQGVPM--NSLRFLFEGQRIADNHTPKELGMEEED------VIEVYQEQTGG 97 (97)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTCCHHHHTCCTTC------EEEEEESSSCC
T ss_pred HHHHHHHHHCCCh--hhEEEEECCeEcCCCCCHHHCCCCCCC------EEEEEEecCCC
Confidence 4566788999996 999999999999999999999999999 99999998875
No 14
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.48 E-value=4.4e-14 Score=91.15 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=49.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 64 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk 64 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|..++ ||||++++.++++|
T Consensus 61 LK~~I~~~~gip~--~~QrL~~~Gk~L~D~~tL~~y~i~~g~------~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 61 IKVKIHEATGMPA--GKQKLQYEGIFIKDSNSLAYYNMASGA------VIHLALKERSGPSS 114 (115)
T ss_dssp HHHHHHHHSSCCT--TTEEEEETTEEECTTSBHHHHTCCSSC------EEEEEECCCSCCSC
T ss_pred HHHHHHHHHCCCh--HHEEEEECCEECCCCCCHHHCCCCCCC------EEEEEEEcCCCCCC
Confidence 4567788999996 999999999999999999999999988 99999999998765
No 15
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=6.1e-14 Score=83.65 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=44.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|++||++|+|..++ |+||++|++
T Consensus 30 lK~~i~~~~gip~--~~qrL~~~g~~L~d~~tL~~~~i~~g~------~i~l~~r~~ 78 (78)
T 2faz_A 30 LRRKIQELFHVEP--GLQRLFYRGKQMEDGHTLFDYEVRLND------TIQLLVRQS 78 (78)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTCBTTTTTCCTTC------EEEEEECCC
T ss_pred HHHHHHHHHCcCh--hhEEEEECCEECCCCCCHHHcCCCCCC------EEEEEEeCC
Confidence 4567788999996 999999999999999999999999998 999999874
No 16
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.46 E-value=7.1e-14 Score=86.37 Aligned_cols=55 Identities=31% Similarity=0.389 Sum_probs=46.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKG 65 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~ 65 (82)
+.+-+++..|+|+ ++|||||+|+.|+|+.||++|+|..++ |+||++++.++.+.+
T Consensus 27 LK~~i~~~~gip~--~~qrL~~~G~~L~d~~tL~~~~i~~~~------~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 27 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGYADLR 81 (96)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBTGGGTCCTTC------EEEEEECCCC-----
T ss_pred HHHHHHhhhCCCh--hHEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEEcCCCCccc
Confidence 4566788899996 999999999999999999999999998 999999999997654
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.45 E-value=1e-13 Score=81.34 Aligned_cols=51 Identities=27% Similarity=0.308 Sum_probs=44.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|+.||++|+|..++ |+||++++.|+
T Consensus 26 lK~~i~~~~~i~~--~~q~L~~~g~~L~d~~tL~~~~i~~g~------~i~l~~~~~GG 76 (76)
T 1ndd_A 26 IKERVEEKEGIPP--QQQRLIYSGKQMNDEKTAADYKILGGS------VLHLVLALRGG 76 (76)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBGGGGTCCTTC------EEEEEECCC--
T ss_pred HHHHHHHHHCcCh--HHEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEeCCCC
Confidence 4566778899996 999999999999999999999999998 99999998775
No 18
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.45 E-value=6e-14 Score=89.90 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=42.6
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEE
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
.+.+-+++++|+|+ ++|||||+||+|+|..||++|+|+.|+ ||||.
T Consensus 46 ~LK~~I~~k~Gip~--~qQrLif~Gk~LkD~~TL~dY~I~dgs------tLhL~ 91 (93)
T 3plu_A 46 DFKKVLSLQIGTQP--NKIVLQKGGSVLKDHISLEDYEVHDQT------NLELY 91 (93)
T ss_dssp HHHHHHHHHHTCCG--GGEEEEETTEECCTTSBTGGGTCCTTC------EEEEE
T ss_pred HHHHHHHHHhCCCH--HHEEEEeCCEEccCcCCHHHcCCCCCC------EEEEE
Confidence 35678899999996 999999999999999999999999999 99985
No 19
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=6.7e-14 Score=86.82 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=46.2
Q ss_pred hhhhhhhhc--CCCCCCCceEEEecceecCCccccccC--CCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKE--NGPKTVNNVQLIHAGKILEDNMTIAES--RLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~e--g~P~s~~~qrLI~~Gk~Led~~tL~~~--~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+ ++|+ ++|||||+||.|+|+.||++| +|..++ ||||++++.++..
T Consensus 35 lK~~I~~~~~~~i~~--~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~------~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 35 LKAHLSRVYPERPRP--EDQRLIYSGKLLLDHQCLRDLLPKQEKRH------VLHLVCNVKSGPS 91 (93)
T ss_dssp HHHHHHHHSTTCCCT--TTCEEEETTEECCSSSCHHHHSCSSSCSE------EEEEECCCCCCCC
T ss_pred HHHHHHHHhcCCCCh--HHeEEEECCEECcCcCCHHHHhcCCCCCC------EEEEEeCCCCCCC
Confidence 455667777 8886 999999999999999999999 999887 9999999888753
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.45 E-value=6.3e-14 Score=84.94 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=46.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++..|+|+ ++|||||+|+.|+|+.||++|+|..++ |+||++++.++
T Consensus 38 lK~~i~~~~gip~--~~qrL~~~G~~L~d~~tL~~~~i~~~~------~i~l~~rl~GG 88 (88)
T 3dbh_I 38 IKERVEEKEGIPP--QQQRLIYSGKQMNDEKTAADYKILGGS------VLHLVLRLRGG 88 (88)
T ss_dssp HHHHHHHHHCCCG--GGCCEEETTEECCTTSBGGGGTCCTTC------EEEECCCCCCC
T ss_pred HHHHHHHHHCcCH--HHEEEEECCeECCCCCcHHHcCCCCCC------EEEEEEeCCCC
Confidence 4566788899996 999999999999999999999999999 99999998875
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.45 E-value=9.4e-14 Score=85.11 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=44.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++++|+|+ ++|||||+||.|+|+.||++|+| .++ |+||++++..+..
T Consensus 31 lK~~i~~~~gip~--~~qrLi~~Gk~L~d~~tL~~~~i-~g~------~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 31 FKEHIAASVSIPS--EKQRLIYQGRVLQDDKKLQEYNV-GGK------VIHLVERAPPQTH 82 (90)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTSBGGGGTC-TTE------EEEEEECCCC---
T ss_pred HHHHHHHHhCCCH--HHEEEEECCeECCCCCCHHHcCC-CCc------EEEEEecCCCCCC
Confidence 5667889999996 99999999999999999999999 677 9999999876643
No 22
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=1.2e-13 Score=84.38 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=47.5
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|++||++|+|..++ |+||++++.++.
T Consensus 35 lK~~i~~~~gip~--~~qrL~~~gk~L~d~~tL~~~~i~~g~------~i~l~~~~~gG~ 86 (89)
T 1wy8_A 35 LRERVWALFDVRP--ECQRLFYRGKQLENGYTLFDYDVGLND------IIQLLVRPDSGP 86 (89)
T ss_dssp HHHHHHHHSCCCT--TTEEEEETTEECCSSSBHHHHTCCTTC------EEEEEECCCCSS
T ss_pred HHHHHHHHHCcCh--hhEEEEECCeECCCCCCHHHCCCCCCC------EEEEEEeCCCCC
Confidence 4567888999996 999999999999999999999999988 999999998874
No 23
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=6.7e-14 Score=87.38 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=46.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|..++ ||||++|+.|+
T Consensus 43 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~y~I~~gs------tI~lv~rl~GG 93 (93)
T 2l7r_A 43 IKAHVASLEGIAP--EDQVVLLAGAPLEDEATLGQCGVEALT------TLEVAGRMLGG 93 (93)
T ss_dssp HHHHHHHHHTCCG--GGCEEEETTEECCTTSBHHHHTCCSSC------EEEEECCCCCC
T ss_pred HHHHHHHHhCcCh--hHEEEEECCEECCCCCcHHHCCCCCCC------EEEEEEecCCC
Confidence 5567888999996 999999999999999999999999998 99999998875
No 24
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.44 E-value=1.1e-13 Score=92.29 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=45.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++++|+|+ ++|||||+|+.|+|++||++|+|+.++ |+||++++.|+.
T Consensus 107 lK~~i~~~~gip~--~~q~L~~~G~~L~d~~tL~~y~i~~g~------~l~l~~rl~GG~ 158 (159)
T 3rt3_B 107 LKQQVSGLEGVQD--DLFWLTFEGKPLEDQLPLGEYGLKPLS------TVFMNLRLRGGG 158 (159)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTSBGGGGTCCTTC------EEEEEECCC---
T ss_pred HHHHHHHHHCCCH--HHEEEEECCeecCCCCCHHHcCCCCCC------EEEEEEecCCCC
Confidence 4567889999996 999999999999999999999999999 999999999875
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.2e-13 Score=83.79 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=47.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|++||++|+|..++ |+||++++.+++
T Consensus 33 lK~~i~~~~gi~~--~~qrL~~~Gk~L~d~~tL~~~~i~~g~------~i~l~~~~~GG~ 84 (87)
T 1wh3_A 33 LKQQIEDQQGLPK--KQQQLEFQGQVLQDWLGLGIYGIQDSD------TLILSKKKGSGP 84 (87)
T ss_dssp HHHHHHHHTCCCT--TTEEEEETTEECCSSSBHHHHTCCTTE------EEEEEECSCCCS
T ss_pred HHHHHHHHhCCCh--HHEEEEECCEEccCCCCHHHCCCCCCC------EEEEEEeccCCC
Confidence 4567788999996 999999999999999999999999988 999999998774
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.7e-13 Score=82.42 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=44.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++..++|+ ++|||+|+|+.|+|+.||++|+|..++ |+||++++.+++
T Consensus 29 lK~~i~~~~~ip~--~~qrL~~~g~~L~d~~tL~~~~i~~~~------~i~l~~rl~GG~ 80 (85)
T 3n3k_B 29 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIHNHS------ALYLLLKLRGGG 80 (85)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETBEECCTTCBTTTTTCCTTC------EEEEEECCC---
T ss_pred HHHHHHHHHCCCH--HHEEEEECCeECCCCCCHHHCCCCCCC------EEEEEEeccCCC
Confidence 4556778899996 999999999999999999999999998 999999998874
No 27
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.43 E-value=8.1e-14 Score=85.96 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=43.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEeccee-cCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKI-LEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~-Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||||+||. |+|++||++|+|..++ |+||+++|
T Consensus 36 LK~~I~~~~gip~--~~QrLi~~Gk~lL~D~~tL~~y~I~~gs------~i~lv~~p 84 (84)
T 2kk8_A 36 VKQKIERSQHIPV--SKQTLIVDGIVILREDLTVEQCQIVPTS------DIQLEVSS 84 (84)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCCSSSBHHHHTCCTTS------CEEEEECC
T ss_pred HHHHHHHHHCcCh--HHEEEEECCEEecCCcCCHHHcCCCCCC------EEEEEEcC
Confidence 4567888999996 99999999999 9999999999999998 99999875
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.43 E-value=6.3e-14 Score=86.31 Aligned_cols=53 Identities=23% Similarity=0.199 Sum_probs=43.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|++||++|+|..++ |+||++++.+++.
T Consensus 30 LK~~I~~~~gip~--~~qrL~~~Gk~L~D~~tL~~~~I~~g~------~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 30 LKQQVSGLEGVQD--DLFWLTFEGKPLEDQLPLGEYGLKPLS------TVFMNLRLRGGLE 82 (88)
T ss_dssp HHHHHHHHTCSCT--TTEEEESSSSCCCTTSBHHHHHCSTTC------EEEEEEC------
T ss_pred HHHHHHHHhCCCh--hHEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEEcCCCcc
Confidence 4567788999996 999999999999999999999999998 9999999888764
No 29
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=84.04 Aligned_cols=46 Identities=26% Similarity=0.420 Sum_probs=41.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+.||++|+| .|+ |+||++|
T Consensus 43 lK~~i~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~~i-~g~------~i~lv~R 88 (88)
T 4eew_A 43 FKEHIAASVSIPS--EKQRLIYQGRVLQDDKKLQEYNV-GGK------VIHLVER 88 (88)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTSBGGGGTC-TTE------EEEEEEC
T ss_pred HHHHHHHHhCCCH--HHEEEEECCEECCCCCcHHHcCC-CCc------EEEEEEC
Confidence 4567888999996 99999999999999999999999 688 9999986
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.5e-13 Score=86.24 Aligned_cols=51 Identities=33% Similarity=0.441 Sum_probs=46.5
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+.||++|+|..++ ||||++|+.++
T Consensus 48 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~i~l~~rl~GG 98 (98)
T 4hcn_B 48 VKSKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 98 (98)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCTTCBSGGGTCCTTE------EEEEECBCSCC
T ss_pred HHHHHHHHhCCCh--hHEEEEECCEECCCCCcHHHCCCCCCC------EEEEEEecCCC
Confidence 4567788999996 999999999999999999999999988 99999998875
No 31
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=2.1e-13 Score=87.32 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=47.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|++||++|+|..++ ||||++++.++++
T Consensus 57 LK~~I~~~~gip~--~~QrL~~~Gk~L~D~~tL~~y~I~~g~------~l~l~~r~~GGk~ 109 (111)
T 1we6_A 57 LKEKIAGEIQIPA--NKQKLSGKAGFLKDNMSLAHYNVGAGE------ILTLSLRERSGPS 109 (111)
T ss_dssp HHHHHHHHTTCCT--TTSEEECSSSBCCTTSBTTTTTCSSSC------EEEEECSSCCSSC
T ss_pred HHHHHHHHHCCCH--HHeEEEECCEECCCCCcHHHCCCCCCC------EEEEEEEcCCCCC
Confidence 4566788999996 999999999999999999999999998 9999999998853
No 32
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.40 E-value=3.9e-13 Score=78.79 Aligned_cols=51 Identities=33% Similarity=0.445 Sum_probs=45.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++..|+|+ ++|||+|+|+.|+|+.||++|+|..++ |+||++++.|+
T Consensus 26 lK~~i~~~~~i~~--~~q~L~~~g~~L~d~~tL~~~~i~~g~------~i~l~~~~~GG 76 (76)
T 3a9j_A 26 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQRES------TLHLVLRLRGG 76 (76)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTCBTGGGTCCTTC------EEEEEECCCCC
T ss_pred HHHHHHHHHCcCH--HHeEEEECCeECCCCCcHHHcCCCCCC------EEEEEEeCCCC
Confidence 3455677889996 999999999999999999999999998 99999998875
No 33
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.40 E-value=3.6e-13 Score=92.55 Aligned_cols=55 Identities=31% Similarity=0.404 Sum_probs=47.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKG 65 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~ 65 (82)
+.+-+++++|+|+ ++|||||+||.|+|++||++|+|+.++ |+||++++.++.+..
T Consensus 26 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~~y~I~~gs------tI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 26 VKSKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGGGET 80 (169)
T ss_dssp HHHHHHHHHCCCT--TTEEEEETTEECCTTSBGGGGTCCTTC------EEEEEECCCC---CC
T ss_pred HHHHHHHHHCcCH--HHEEEEECCccccCcCcHHHcCCCCCC------EEEEEEEeccccccc
Confidence 4567888999996 999999999999999999999999999 999999999987653
No 34
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.40 E-value=2.9e-13 Score=83.49 Aligned_cols=49 Identities=35% Similarity=0.506 Sum_probs=44.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|..|+ |+||++|+.
T Consensus 43 LK~~I~~~~gip~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~i~l~~rlr 91 (91)
T 3v6c_B 43 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLR 91 (91)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCTTCBTGGGTCCTTC------EEEEECCCC
T ss_pred HHHHHHhhhCCCh--hhEEEEECCeECCCcCcHHHCCCCCCC------EEEEEEecC
Confidence 4566788999996 999999999999999999999999999 999999863
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=2.7e-13 Score=83.59 Aligned_cols=52 Identities=33% Similarity=0.452 Sum_probs=42.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||+|+||.|+|++||++|+|..++ |+||++++.+++
T Consensus 35 LK~~I~~~~gip~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~i~l~~r~~GG~ 86 (88)
T 1sif_A 35 LKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGG 86 (88)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCTTSBSGGGTCCTTC------EEEEEC------
T ss_pred HHHHHHHHHCcCh--hhEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEeCCCCC
Confidence 4566788899996 999999999999999999999999998 999999988874
No 36
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=4.3e-13 Score=80.41 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=46.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++..++|+ ++|||+|+|+.|+|+.||++|+|..++ |+||++++.+++
T Consensus 29 lK~~i~~~~~i~~--~~qrL~~~g~~L~d~~tL~~~~i~~~~------~l~l~~r~~GG~ 80 (85)
T 3mtn_B 29 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKWS------TLFLLLRLRGGG 80 (85)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCTTSBTGGGTCCTTC------EEEEECCCCCC-
T ss_pred HHHHHHHHHCcCh--HHEEEEECCEECCCCCCHHHcCCCCCC------EEEEEEECcCCC
Confidence 4456778889996 999999999999999999999999998 999999988874
No 37
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=88.16 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=39.7
Q ss_pred hhhhhhh-hcCCCCCCCceEEEecceecCCccccccC--CCCCCCCCCCcEEEEEE
Q 034809 3 FHIYLAE-KENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVVELPGTAITMHVV 55 (82)
Q Consensus 3 ~~~w~~e-~eg~P~s~~~qrLI~~Gk~Led~~tL~~~--~i~~g~~p~~~~Tmhlv 55 (82)
+.+-+++ .+|+|+ |++|||||+||+|+|++||++| +|+.++ |||||
T Consensus 51 LK~~I~~~~~g~pp-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~------tihLv 99 (99)
T 2kdb_A 51 LKTHLSNVYPSKPL-TKDQRLVYSGRLLPDHLQLKDILRKQDEYH------MVHLV 99 (99)
T ss_dssp HHHHHHHHSTTCCC-TTTCCEEETTEEECTTSBTHHHHTTTCSEE------EEEEC
T ss_pred HHHHHHHHhcCCCC-hhhEEEEECCEECCCCCCHHHHhcCCCCCC------EEEeC
Confidence 4566777 477774 6999999999999999999999 999888 99986
No 38
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.38 E-value=5.3e-13 Score=85.22 Aligned_cols=49 Identities=24% Similarity=0.553 Sum_probs=43.0
Q ss_pred hhhhh-hhhcCCCCCCCceEEEecceecCCccccccCCC-CCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYL-AEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~-~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i-~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+ ++++|+|+ ++|||||+||+|+|+.||++|+| +.++ |+||++..+
T Consensus 47 lK~~I~~~~~gip~--~~QrLi~~Gk~L~D~~tL~dy~I~~~g~------ti~lmvskp 97 (98)
T 4a20_A 47 IKQHLISEEKASHI--SEIKLLLKGKVLHDNLFLSDLKVTPANS------TITVMIKPN 97 (98)
T ss_dssp HHHHHHHTTSCSCG--GGEEEEETTEEECTTCBGGGSCCBTTBC------EEEEEECCC
T ss_pred HHHHHHHHhcCCCh--hhEEEEECCEECcCcCCHHHcCcCCCCC------EEEEEEeCC
Confidence 44556 77889996 99999999999999999999999 9888 999998653
No 39
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=9.4e-13 Score=82.12 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=44.4
Q ss_pred hhhhhhhh---cCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEK---ENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~---eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++. +|+|+ ++|||||+||.|+|++||++|+|..++ |+||+++.+.+.
T Consensus 26 LK~~I~~~~~~~gip~--~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~i~l~~~~~~~~ 80 (95)
T 1uel_A 26 LKEKIESEKGKDAFPV--AGQKLIYAGKILNDDTALKEYKIDEKN------FVVVMVTKPKAV 80 (95)
T ss_dssp HHHHHHHHHCTTTCCT--TTEEEEETTEECCTTSBGGGGTCCSSS------EEEEEESSCCCC
T ss_pred HHHHHHhhcccCCCCh--hhEEEEECCEECCCcCcHHHCCCCCCC------EEEEEEeCCCCC
Confidence 34556666 88996 999999999999999999999999999 999999765544
No 40
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.9e-13 Score=88.24 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=42.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-+++++|+|+ ++|||||+||+|+|++||++|+|+.++ ||||+-
T Consensus 54 lK~~Ia~k~Gip~--~qQrLi~~Gk~L~D~~TL~dygI~~gs------tlhL~~ 99 (100)
T 1uh6_A 54 LKKLIAAQTGTRW--NKIVLKKWYTIFKDHVSLGDYEIHDGM------NLELYY 99 (100)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCSSCBHHHHTCCTTE------EEEEEC
T ss_pred HHHHHHHHhCCCH--HHEEEEECCEECCCCCCHHHcCCCCCC------EEEEEe
Confidence 5667899999996 999999999999999999999999988 999974
No 41
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.2e-13 Score=85.28 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=44.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+.||++|+|..|+ ||||+++.+..
T Consensus 27 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~i~lv~~~~~~ 77 (106)
T 3m62_B 27 TKTKLAQSISCEE--SQIKLIYSGKVLQDSKTVSECGLKDGD------QVVFMVSQKKS 77 (106)
T ss_dssp HHHHHHHTTTSCG--GGCEEEETTEECCTTSBTTTTTCCTTC------EEEEECCC---
T ss_pred HHHHHHHHHCCCh--hhEEEEECCEECCCcCCHHHcCCCCCC------EEEEEEcCCCC
Confidence 5667888999996 999999999999999999999999999 99999986554
No 42
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.37 E-value=7.6e-13 Score=79.79 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=41.3
Q ss_pred hhhhhhhh---cCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEK---ENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~---eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++. +|+|+ ++|||||+|+.|+|++||++|+|..++ |+||+++.+
T Consensus 31 lK~~i~~~~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~i~l~~~~~ 82 (85)
T 2wyq_A 31 LKEKIEAEKGRDAFPV--AGQKLIYAGKILSDDVPIRDYRIDEKN------FVVVMVTKT 82 (85)
T ss_dssp HHHHHHHHHCTTTCCG--GGEEEEETTEECCTTSBGGGGCCCTTS------EEEEEEC--
T ss_pred HHHHHHhhccccCCCH--HHeEEEECCEECcCCCCHHHcCCCCCC------EEEEEEcCC
Confidence 34455665 88996 999999999999999999999999998 999998764
No 43
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.9e-13 Score=79.69 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=44.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++..|+|+ ++|||+|+||.|+|+.||++|+|..|+ |+||+++++
T Consensus 33 LK~~i~~~~~i~~--~~qrL~~~gk~L~d~~tL~~~~i~~g~------~i~l~~~~~ 81 (81)
T 2dzi_A 33 LKQLVSEKLNVPV--RQQRLLFKGKALADGKRLSDYSIGPNS------KLNLVVKPL 81 (81)
T ss_dssp HHHHHHHHTCCCT--TTCEEEETTEECCTTSBGGGGTCCSSB------CCEEECCCC
T ss_pred HHHHHHHHHCcCH--HHEEEEECCeECCCCCcHHHcCCCCCC------EEEEEEeCC
Confidence 4566778899996 999999999999999999999999998 999999864
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.36 E-value=8.8e-13 Score=84.80 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=46.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++..|+|+ ++|||||+||.|+|+.||++|+|..++ |+||++++.++
T Consensus 61 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~~~gI~~gs------~I~l~~rl~GG 111 (111)
T 3vdz_A 61 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 111 (111)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBTTTTTCCTTC------EEEEEECCCC-
T ss_pred HHHHHHHHhCCCh--HHEEEEECCEECCCCCcHHHCCCCCCC------EEEEEEecCCC
Confidence 4567788899996 999999999999999999999999998 99999998875
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=2.3e-13 Score=84.50 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=46.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|..++ ||||++++.++.
T Consensus 42 LK~~I~~~~gip~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~i~l~~~~~~g~ 93 (96)
T 1wx8_A 42 FKKQISKYLHCNA--DRLVLIFTGKILRDQDILSQRGILDGS------TVHVVVRSHSGP 93 (96)
T ss_dssp HHHHHHHHTCSCT--TTBCCEETTEECCTTSCHHHHTCCTTE------EEECCBCCSSCS
T ss_pred HHHHHHHHhCCCH--HHEEEEECCEECCCcCCHHHCCCCCCC------EEEEEEeCCCCC
Confidence 4567788999996 999999999999999999999999988 999999987763
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=7.1e-13 Score=83.99 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=46.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|..++ ||||++++.++.
T Consensus 47 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~~ygI~~gs------tI~l~~r~~~~p 98 (100)
T 1yqb_A 47 LKEEISQRFKAHP--DQLVLIFAGKILKDPDSLAQCGVRDGL------TVHLVIKRQHRA 98 (100)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEECCTTSBHHHHTCCTTC------EEEEEECCCCSC
T ss_pred HHHHHHHHHCcCh--hhEEEEECCEECCCcCcHHHCCCCCCC------EEEEEEcCCCCC
Confidence 4567788999996 999999999999999999999999998 999999987653
No 47
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.35 E-value=6.8e-13 Score=82.72 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=43.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEe-------cceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIH-------AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~-------~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++++|+|+ ++||||| +|++|+|++||++|+|+.|+ ||||+-..+
T Consensus 30 lK~ki~~~~Gip~--~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~------~ihlvd~~P 85 (86)
T 4b6w_A 30 IKENVFTHFATPP--EYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEF------VIHVVDLQP 85 (86)
T ss_dssp HHHHHHTTSCCCG--GGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTC------EEEEEECCC
T ss_pred HHHHHHHHHCCCH--HHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCC------EEEEEeCCC
Confidence 5677899999996 9999995 79999999999999999999 999986543
No 48
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.03 E-value=7.8e-14 Score=82.66 Aligned_cols=50 Identities=26% Similarity=0.477 Sum_probs=45.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|+.||++|+|..++ |+||++++.+
T Consensus 26 lK~~i~~~~gi~~--~~qrL~~~gk~L~d~~tL~~~~i~~g~------~i~l~~rlrg 75 (76)
T 3b1l_X 26 LKEVVAKQQGVPA--DQLRVIFAGKELPNHLTVQNCDLEQQS------IVHIVQRPRR 75 (76)
Confidence 4566778899996 999999999999999999999999998 9999998765
No 49
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.35 E-value=4.4e-13 Score=90.75 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=43.1
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++++|+|+ ++|||||+|+.|+|++||++|+|+.++ |+||++++.++
T Consensus 122 lK~~I~~~~gip~--~~q~L~~~g~~L~D~~tL~~y~i~~g~------tl~l~~rlrgG 172 (172)
T 3u30_A 122 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 172 (172)
T ss_dssp HHHHHHHHHCCCG--GGCCEEETTEECCTTSBSGGGTCCTTC------EEEECC-----
T ss_pred HHHHHHHHhCCCc--eeEEEEECCccCCCCCcHHHhCCCCCC------EEEEEEecCCC
Confidence 5667889999996 999999999999999999999999999 99999998764
No 50
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.34 E-value=1.4e-12 Score=77.06 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=43.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||+|+||.|+|+.||++|+|..|+ |+||+.++
T Consensus 29 LK~~i~~~~~i~~--~~qrL~~~gk~L~d~~tL~~~~i~~g~------~i~l~~~~ 76 (77)
T 2bwf_A 29 FKEAINKANGIPV--ANQRLIYSGKILKDDQTVESYHIQDGH------SVHLVKSQ 76 (77)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBTGGGTCCTTC------EEEEEECC
T ss_pred HHHHHHHHhCCCH--HHEEEEECCeEcCCCCCHHHcCCCCCC------EEEEEEcC
Confidence 4556778899996 999999999999999999999999998 99998764
No 51
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.4e-12 Score=84.40 Aligned_cols=52 Identities=33% Similarity=0.429 Sum_probs=47.5
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|++||++|+|..++ ||||++++.++.
T Consensus 35 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~ygI~~gs------tI~l~~~~~GG~ 86 (114)
T 2kdi_A 35 VKSKIQDKEGIPP--DQQRLIWAGKQLEDGRTLSDYNIQRES------TLHLVLRLRGGS 86 (114)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTCBTTTTTCCSSC------EEEEEECCCSSC
T ss_pred HHHHHHHHHCcCh--HHEEEEECCEECCCCCcHHHCCCCCCC------EEEEEEEcCCCc
Confidence 4566788999996 999999999999999999999999998 999999998875
No 52
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.33 E-value=2.1e-12 Score=80.50 Aligned_cols=54 Identities=31% Similarity=0.420 Sum_probs=46.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 64 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk 64 (82)
+.+-+++..|+|+ ++|||+|+||.|+|++||++|+|..++ |+||+++..++..-
T Consensus 26 LK~~I~~~~gi~~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 26 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGRDP 79 (98)
T ss_dssp HHHHHHHHTCCCG--GGEEEEETTEECCTTSBTGGGTCCTTC------EEEEEECCCCC---
T ss_pred HHHHHHHHHCcCh--hhEEEEECCEECCCCCCHHHcCCCCCC------EEEEEEeCCCCCcC
Confidence 4566788899996 999999999999999999999999998 99999999877543
No 53
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=2.5e-12 Score=81.57 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=47.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|. ++|||||+||.|+|++||++|+|..++ ||||++++.++..
T Consensus 42 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~gi~~g~------~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 42 LKEEISQRFKAHP--DQLVLIFAGKILKDPDSLAQCGVRDGL------TVHLVIKRQHRAM 94 (106)
T ss_dssp HHHHHHHHHTCCT--TTEEEEETTEECCTTSCHHHHTCCTTE------EEEEEECCCCCSC
T ss_pred HHHHHHHHHCcCh--hhEEEEECCEECCCcCcHHHcCCCCCC------EEEEEEcCCCCCC
Confidence 5567788999996 999999999999999999999999888 9999998877643
No 54
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=1.6e-12 Score=85.57 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=43.5
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|. ++|||||+||.|+|++||++|+|..++ ||||++++.++..
T Consensus 57 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~dygI~~gs------tI~lv~~~~gg~~ 109 (125)
T 1j8c_A 57 FKEAISKRFKSQT--DQLVLIFAGKILKDQDTLIQHGIHDGL------TVHLVIKRDPNSS 109 (125)
T ss_dssp HHHHHHHHHCSCS--SSEEEEETTEEESTTSCGGGTTCSSSE------EEEEEEC------
T ss_pred HHHHHHHHHCcCc--ceEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEeccCCCCC
Confidence 5567888999996 999999999999999999999999988 9999999887754
No 55
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=1.6e-12 Score=82.71 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=45.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++++|+|+ ++|||||+||.|+|++||++|+|..++ ||||+++...+
T Consensus 49 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~ygI~~g~------ti~lv~~~~~~ 99 (106)
T 1ttn_A 49 MKRRLHAAEGVEP--GSQRWFFSGRPLTDKMKFEELKIPKDY------VVQVIVSQPVQ 99 (106)
T ss_dssp HHHHHHHTTCCCS--TTCEEEETTEECCTTSHHHHCCCSSSC------EEEEECCCSSC
T ss_pred HHHHHHHHHCcCc--ccEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEeCCCC
Confidence 4567788999996 999999999999999999999999998 99999986654
No 56
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=1.9e-12 Score=82.58 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=44.5
Q ss_pred hhhhhhhhc--CCCCCCCc-eEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCC
Q 034809 3 FHIYLAEKE--NGPKTVNN-VQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 3 ~~~w~~e~e--g~P~s~~~-qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
+.+-+++.+ |+|+ ++ |||||+||.|+|++||++|+|..++ ||||+++...
T Consensus 50 LK~~i~~~~~~gip~--~~~qrLi~~Gk~L~D~~tL~~y~i~~g~------~i~lv~~~~~ 102 (107)
T 1x1m_A 50 LKQLIAGKLQESVPD--PELIDLIYCGRKLKDDQTLDFYGIQPGS------TVHVLRKSWS 102 (107)
T ss_dssp HHHHHHHHCTTTCCC--SSSEEEEETTEECCTTCBHHHHTCCTTC------EEEEEESSCC
T ss_pred HHHHHHHHhccCCCh--hhcEEEEECCeECCCCCcHHHcCCCCCC------EEEEEeCCCC
Confidence 456677888 9996 99 9999999999999999999999998 9999998654
No 57
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.31 E-value=2.8e-13 Score=95.84 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=4.2
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccccccc
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGEKL 68 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~~k~ 68 (82)
++.+-+++.+|+|+ ++|||||+|++|+|++||+ .++ ||||++|+.++.++++|+
T Consensus 25 ~LK~kI~~keGIP~--~qQRLIf~GK~LeD~~TLs-----~~S------TLhLvlRLrGG~~krkK~ 78 (189)
T 2xzm_9 25 DLKSQISQDMGFEI--DMMTLVNNGFIAPNTELVT-----DDV------TYYLSLKLLGGKKKKKKK 78 (189)
T ss_dssp ------------------------------------------------------------CCCCCCC
T ss_pred HHHHHHHHHhCcCh--hHEEEEecCeECCCCCccc-----CCC------EEEEEEecCCCccccccc
Confidence 35677899999996 9999999999999999999 566 999999999998766443
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.31 E-value=3.2e-12 Score=81.91 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=45.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++..|+|+ ++|||+|+||.|+|++||++|+|..++ |+||++++.|+
T Consensus 61 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~gI~~gs------~I~l~~rl~GG 111 (111)
T 2ojr_A 61 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 111 (111)
T ss_dssp HHHHHHHHHCCCT--TTEEEEETTEECCSSCBTTTTTCCTTC------EEEEEECCCC-
T ss_pred HHHHHHHHHCcCc--ccEEEEECCEECCCCCcHHHcCCCCCC------EEEEEEeCCCC
Confidence 4566788899996 999999999999999999999999998 99999998875
No 59
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.30 E-value=2.9e-12 Score=83.58 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=46.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+.++++.|+|+ ++|||+|+|+.|+|++||++|+|..++ ++||++++.||
T Consensus 102 lK~~i~~~~gi~~--~~qrL~~~g~~L~d~~tL~~~~i~~~~------~i~l~~r~~GG 152 (152)
T 3b08_A 102 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 152 (152)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBTGGGTCCTTC------EEEEEECCCC-
T ss_pred HHHHHHHHhCcCh--hhEEEEECCEECCCCCCHHHcCCCCCC------EEEEEEecCCC
Confidence 4567788999996 999999999999999999999999998 99999998875
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.5e-12 Score=82.76 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=43.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+.||++|+|+.|+ |+||+.+.
T Consensus 53 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~~~gI~~g~------tI~lv~~~ 100 (101)
T 3m63_B 53 FKEAINKANGIPV--ANQRLIYSGKILKDDQTVESYHIQDGH------SVHLVKSQ 100 (101)
T ss_dssp HHHHHHHHHSCCS--TTCCEEETTEECCTTSBTTTTTCCTTE------EEEECCCC
T ss_pred HHHHHHHHHCcCh--HHEEEEECCEECCCcCcHHHCCCCCCC------EEEEEeCC
Confidence 4567788999996 999999999999999999999999998 99998764
No 61
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=80.69 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=44.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL 60 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~ 60 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|..++ ||||++++..
T Consensus 50 LK~~I~~~~gip~--~~qrLi~~Gk~L~D~~tL~~~gI~~g~------~I~l~~~~~~ 99 (101)
T 2klc_A 50 FKEEISKRFKSHT--DQLVLIFAGKILKDQDTLSQHGIHDGL------TVHLVIKTQN 99 (101)
T ss_dssp HHHHHHHHHTCCG--GGEEEEETTEEECTTCCTGGGTCCTTC------EEEEEECCSS
T ss_pred HHHHHHHHHCcCh--hhEEEEECCEECCCcCcHHHcCCCCCC------EEEEEEcCCC
Confidence 4566788899996 999999999999999999999999988 9999998654
No 62
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.28 E-value=3.3e-12 Score=83.10 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=43.2
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCC-CCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i-~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++++|+|+ ++|||||+|+.|+|++||++||| +.|+ |+||++-.
T Consensus 52 LK~~I~~k~Gipp--~~QRli~ggkll~D~~TL~~ygI~~~G~------t~hL~l~~ 100 (105)
T 4dbg_A 52 LKDMVFLDYGFPP--VLQQWVIGQRLARDQETLHSHGVRQNGD------SAYLYLLS 100 (105)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEEECTTCBTGGGTCCSTTC------EEEEEECC
T ss_pred HHHHHHHHhCCCH--HHEEEeccCeEccCcCcHHHcCCCCCCC------EEEEEEEe
Confidence 4567889999996 99999999999999999999999 5888 99998853
No 63
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.28 E-value=3.3e-13 Score=88.53 Aligned_cols=53 Identities=32% Similarity=0.387 Sum_probs=1.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|+.++ |+||++++.++..
T Consensus 26 LK~~I~~~~gip~--~~QrLi~~Gk~L~D~~tL~~~~I~~gs------ti~l~~rl~GG~~ 78 (128)
T 3u5e_m 26 VKSKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGII 78 (128)
T ss_dssp -----------------------------------------------------------CC
T ss_pred HHHHHHHHhCcCh--HHEEEEECCEECCCCCchhhhccCCCC------EEEEEEEcCCCCC
Confidence 4566788899996 999999999999999999999999998 9999999998864
No 64
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.5e-12 Score=84.81 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=45.6
Q ss_pred hhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 4 HIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
.+-..+..++|. +.|||||+||+|.|+.||++|||..|. |+||+++...++-
T Consensus 43 Ke~ls~~~~iP~--e~qrLIy~GKiLKD~eTL~~~gIk~g~------TIhLvi~s~~p~~ 94 (118)
T 2daf_A 43 KDHFSHLLGIPH--SVLQIRYSGKILKNNETLVQHGVKPQE------IVQVEIFSTNPDL 94 (118)
T ss_dssp HHHHHHHHTCCT--TTEEEEETTEEECSSCCHHHHSCCSSC------EEEEEEEESCTTT
T ss_pred HHHHHhhhCCCh--HHEEEEECCeEcCCcchHHHcCCCCCC------EEEEEEecCCCcc
Confidence 344556779997 999999999999999999999999999 9999999877753
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.27 E-value=2.9e-12 Score=90.24 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=48.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
+.+-+++.+|+|+ ++|||||+|+.|+|+.||++|+|+.++ ||||++++.++.+
T Consensus 131 LK~kI~~~~gIp~--~~QrLi~~Gk~L~D~~tL~dygI~~gs------tI~LvlrlrGG~~ 183 (189)
T 3q3f_A 131 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGGGQ 183 (189)
T ss_dssp HHHHHHHHHCCCG--GGCCEEETTEECCTTCBGGGGTCCTTC------EEEECCCCCCCCC
T ss_pred HHHHHHhccCCCH--HHEEEEECCEECCCCCCHHHCCCCCCC------EEEEEEEcCCCCc
Confidence 4566788999996 999999999999999999999999999 9999999998864
No 66
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=2.3e-12 Score=81.50 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=46.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCc-cccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~-~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
+.+-+++.+|+|+ ++|||||+||.|+|+ +||++|+|..++ +|||+.+..++.
T Consensus 37 LK~~I~~~~gip~--~~qrL~~~gk~L~D~~~tL~~ygI~~g~------~l~l~~~~~gg~ 89 (102)
T 1v5o_A 37 FRVLCELESGVPA--EEAQIVYMEQLLTDDHCSLGSYGLKDGD------MVVLLQKDNVGL 89 (102)
T ss_dssp HHHHHHHHTCCCG--GGBCEEETTEEECCSSSBHHHHTCCTTE------EEEECBCCCCCC
T ss_pred HHHHHHHHHCcCh--HHeEEEECCEECCCCcccHHHCCCCCCC------EEEEEECCCCCC
Confidence 5667888999996 999999999999887 799999999988 999999887764
No 67
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.25 E-value=6.9e-12 Score=77.13 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=42.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|..++ ++||+..+
T Consensus 37 LK~~I~~~~gip~--~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~l~l~~s~ 84 (85)
T 2kd0_A 37 LKSQLQPITNVLP--RGQKLIFKGKVLVETSTLKQSDVGSGA------KLMLMASQ 84 (85)
T ss_dssp HHHHHHHHHCCCT--TTCEEEETTEECCTTCBTTTTTCCTTE------EEEEECCC
T ss_pred HHHHHHHHHCcCh--HHEEEEECCeECCCcCCHHHCCCCCCC------EEEEEEeC
Confidence 4566788999996 999999999999999999999999988 99998643
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=83.82 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=46.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||+|+|+.|+|+.||++|+|..++ |+||+++..++
T Consensus 46 lK~~I~~~~gip~--~~QrL~~~g~~L~d~~tL~~~~i~~~~------~l~l~~~~~gg 96 (172)
T 3u30_A 46 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 96 (172)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTCBTGGGTCCTTC------EEEEEECCCCC
T ss_pred HHHHHHHHHCcCh--HHEEEEECCccccccCCHhHcCCcccc------eeeeeeccccc
Confidence 4567889999996 999999999999999999999999998 99999998766
No 69
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.21 E-value=1.4e-11 Score=76.34 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=40.2
Q ss_pred hhhhhhhcCCCCCCCceEEEecceecCCc-cccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 4 HIYLAEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrLI~~Gk~Led~-~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
.+-+++.+ +++|||||+||.|+|+ +||++|+|..++ +|||+++.+...
T Consensus 34 K~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~------~i~l~~~~~~~~ 82 (95)
T 1wia_A 34 KSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNC------VIHCHRSPPGAA 82 (95)
T ss_dssp HHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTE------EEEEECCCCCCC
T ss_pred HHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCC------EEEEEECCCCCC
Confidence 44455555 4899999999999999 999999999988 999999876554
No 70
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=1.7e-12 Score=84.16 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=43.0
Q ss_pred hhhhhhhhcCCCCCC-------------CceEEEecceecC-CccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTV-------------NNVQLIHAGKILE-DNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~-------------~~qrLI~~Gk~Le-d~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++++++|+.. ++|||||+||+|+ |++||++|+|..++ ||||++++.+.
T Consensus 33 LK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~------~l~lv~~lr~~ 99 (105)
T 1v2y_A 33 LKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRD------EVSFIKKLGQK 99 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSE------EEEEEECSCSC
T ss_pred HHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCC------EEEEEehhccC
Confidence 455677778776421 3689999999995 67999999999999 99999998654
No 71
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=2.1e-11 Score=75.14 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=43.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCC-ccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILED-NMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led-~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++.+|+|+ ++|||||+||.|+| +.||++|+|..++ +|||+.....+
T Consensus 37 LK~~i~~~~gip~--~~qrL~~~Gk~L~D~~~~L~~~~i~~g~------~i~l~~~~~~~ 88 (92)
T 1wxv_A 37 LAQVVEEVIGVPQ--SFQKLIFKGKSLKEMETPLSALGIQDGC------RVMLIGKKNSG 88 (92)
T ss_dssp HHHHHHHHTCCCT--TTCEEEETTEEECCSSSBHHHHTCCSSE------EEEEESCCSCS
T ss_pred HHHHHHHHHCcCH--HHEEEEECCeecCCCcccHHHCCCCCCC------EEEEEecCCCC
Confidence 4566788999996 99999999999998 6699999999888 99998865543
No 72
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.15 E-value=2.3e-11 Score=76.99 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=40.0
Q ss_pred hhhhhhhhcCCCCCCCceEEEec--ce---ec-CCccccccCCCCCCCCCCCcEEEEEE
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHA--GK---IL-EDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~--Gk---~L-ed~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
+.+-+++++|+|+ ++|||||+ |+ .| +|++||++|+|+.|+ ||||+
T Consensus 43 LK~kI~~~~GiP~--~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gs------tihlv 93 (95)
T 2kjr_A 43 LKTKLEILTGGCA--GTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGL------RLHVV 93 (95)
T ss_dssp HHHHHHHHHCSCT--TTEEEEEEETTEEEEECCCTTSBHHHHCCSSSC------EEEEE
T ss_pred HHHHHHHHHCcCH--HHeEEEEecCCcccceeCCCCCCHhHCCcCCCC------EEEEE
Confidence 5677899999996 99999998 55 45 999999999999999 99986
No 73
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.15 E-value=4.5e-11 Score=79.47 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=43.7
Q ss_pred hhhhhhhhcCCCCCCCceEEE-e-cceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLI-H-AGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI-~-~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||| | +|+.|+|+.||++|+|..++ |+||+++.
T Consensus 28 lK~~I~~~~gip~--~~QrL~~~~~g~~L~d~~tL~~y~i~~~~------~l~l~~~~ 77 (159)
T 3rt3_B 28 LKAQITQKIGVHA--FQQRLAVHPSGVALQDRVPLASQGLGPGS------TVLLVVDK 77 (159)
T ss_dssp HHHHHHHHHCCCG--GGEEEEEETTCCBCCTTSCGGGGTCCTTC------EEEEEECC
T ss_pred HHHHHHHHhCCCH--HHEEEEEcCCCCCCCCCCCHHHcCCCCCC------EEEEEccC
Confidence 4566788999996 999999 9 89999999999999999998 99999994
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.14 E-value=5.8e-11 Score=77.36 Aligned_cols=51 Identities=33% Similarity=0.447 Sum_probs=45.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+.+-+++..|+|+ ++|||+|+|+.|+|+.||++|+|..++ |+||+.+..++
T Consensus 26 lK~~i~~~~gip~--~~q~L~~~g~~L~d~~tL~~~~i~~~~------~l~l~~~~~~~ 76 (152)
T 3b08_A 26 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRLRGG 76 (152)
T ss_dssp HHHHHHHHHCCCG--GGEEEEETTEECCTTSBTGGGTCCTTC------EEEEEECCTTC
T ss_pred HHHHHHHHHCcCh--HHeEEEECCeECcCcccHHHhccCCCC------eeEEEeecccc
Confidence 4556778899996 999999999999999999999999998 99999987665
No 75
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.14 E-value=2e-11 Score=77.70 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=40.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecce---e----cCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGK---I----LEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk---~----Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-+++++|+|+ ++|||||.|+ . ++|++||++|+|+.|+ ||||+=
T Consensus 42 LK~kIe~~~Gip~--~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~------~Ihlvd 94 (97)
T 2kj6_A 42 VKEKLWKKCGTSV--NSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGF------RLHIID 94 (97)
T ss_dssp HHHHHHHHHCCCT--TSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCC------EEEEEE
T ss_pred HHHHHHHHHCcCH--HHeEEEEecCCCcccceecCCcCCHHHCCCCCCC------EEEEEe
Confidence 5677899999996 9999999984 3 5999999999999999 999974
No 76
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=3.3e-11 Score=75.82 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=42.9
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+-+++.+|+|+ ++|||||.||.|+|+ +|++|+|..++ +|||+....
T Consensus 33 lK~~I~~~tgip~--~~QkLi~~Gk~L~D~-tL~~~~I~~g~------~i~l~~~~~ 80 (96)
T 1wgg_A 33 FKAQLFALTGVQP--ARQKVMVKGGTLKDD-DWGNIKMKNGM------TVLMMGSAD 80 (96)
T ss_dssp HHHHHHHHTCCCT--TTSCCEETTEECCSS-CCCSCCCCSSC------EEECCCCCC
T ss_pred HHHHHHHHHCcCH--HHeEEEECCcCCCCC-CHHHCCCCCCC------EEEEEecch
Confidence 5566889999996 999999999999999 99999999998 999987654
No 77
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=78.25 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=45.7
Q ss_pred chhhhhhhhcCCCCCCCceEEEe--cceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIH--AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~--~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
++.+-+++++|||+ ++||||| +|+ |+|+++|++|+|+.|+ ||||++....+.
T Consensus 33 ~LK~~I~~~tgIpp--~~QkLi~~~~gk-L~D~~tLs~~~I~~gs------tL~lvl~~~~~~ 86 (100)
T 2dzm_A 33 EIKQILENELQIPV--SKMLLKGWKTGD-VEDSTVLKSLHLPKNN------SLYVLTPDLPPP 86 (100)
T ss_dssp HHHHHHHHHHCCCT--TTCCEECCSSSC-CCTTSBHHHHCCCSEE------EEEECCSSSCCC
T ss_pred HHHHHHHHHHCCCh--hHeEEEccCCCC-CCCcCCHHHcCCCCCC------EEEEEecCCCCC
Confidence 35677899999996 9999998 777 9999999999999988 999999887654
No 78
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.07 E-value=9.7e-11 Score=72.48 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=42.8
Q ss_pred hhhhhhhhcCCCCCCCceEEE---ecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI---~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||| |+||.|+|+.+|++|+|..++ +|||+..+
T Consensus 33 lK~~I~~~~gip~--~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~------~l~l~~~~ 83 (90)
T 1v5t_A 33 LKQFLKTLTGVLP--ERQKLLGLKVKGKPAENDVKLGALKLKPNT------KIMMMGTR 83 (90)
T ss_dssp HHHHHHHHTCCCT--TTCEEESCEETTEECCTTSBHHHHTCCTTE------EEEEECCC
T ss_pred HHHHHHHHHCcCH--HHeEEEeeccCCcCcCCCCCHHHcCCCCCC------EEEEEecC
Confidence 4566788999996 999999 999999999999999999988 99997654
No 79
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=2e-10 Score=72.56 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=43.9
Q ss_pred hhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 7 LAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 7 ~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
..+++|+|+ +++||||+|+.|+++.|+++|+++.++ +|||+++..++.
T Consensus 37 y~~~~gi~~--~~~rf~FdG~~l~~~~Tp~dl~medgD------~Idv~~~~~GG~ 84 (94)
T 2io1_B 37 YCERQGLSM--RQIRFRFDGQPINETDTPAQLEMEDED------TIDVFQQQTGGV 84 (94)
T ss_dssp HHHHHTCCG--GGEEEEETTEECCTTCCTTTTTCCTTC------EEEEEECCEESC
T ss_pred HHHHhCCCc--ccEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEEeccCCC
Confidence 457899986 999999999999999999999999999 999999988773
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=1.4e-10 Score=72.45 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=40.3
Q ss_pred hhhhhhhhcCCCCCCCceEEEecc---ee----cCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAG---KI----LEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~G---k~----Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+-+++++|+|+ ++|||+|+| +. |+|++||++|+|+.++ |+||+-
T Consensus 34 lK~ki~~~~gip~--~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~------~l~v~d 86 (95)
T 1v6e_A 34 FKCKLELVVGSPA--SCMELELYGADDKFYSKLDQEDALLGSYPVDDGC------RIHVID 86 (95)
T ss_dssp HHHHHHHHTCSCT--TTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTC------EEEEBC
T ss_pred HHHHHHHHHCCCH--HHeEEEEeCCCCccccccCCCcCCHhHCCCCCCC------EEEEEE
Confidence 5667889999996 999999987 54 5899999999999998 999975
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=72.57 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=38.6
Q ss_pred hhhhhhh-hcCCCCCCCceEEEec--ceecCCccccccCCCCCCCCCCCcEEEEE
Q 034809 3 FHIYLAE-KENGPKTVNNVQLIHA--GKILEDNMTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 3 ~~~w~~e-~eg~P~s~~~qrLI~~--Gk~Led~~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
+.+.+++ ++|+|+ ++|||||. ||+|+|++||++|+|..++ |+|+
T Consensus 39 lK~~I~~~~~~i~~--~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s------tl~~ 85 (88)
T 2dzj_A 39 IKNLFTKTHPQWYP--ARQSLRLDPKGKSLKDEDVLQKLPVGTTA------TLYF 85 (88)
T ss_dssp HHHHHHHHCSSSCT--TTCCEESSTTSCCCCTTCBTTTSSCCSEE------EEEE
T ss_pred HHHHHHHHhcCCCh--HHeEEEecCCCcCcCCCCCHHHcCCCCCC------EEEE
Confidence 5567788 589985 99999987 9999999999999999888 8886
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.01 E-value=2.4e-10 Score=85.59 Aligned_cols=48 Identities=35% Similarity=0.518 Sum_probs=42.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++.+|+|+ ++|||||+||.|+|++||++|+|..++ ||||++|+
T Consensus 259 LK~kI~~~~GIp~--~~QRLi~~Gk~L~D~~TLsdygI~~gs------tL~LvlRL 306 (307)
T 3ai5_A 259 VKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQKES------TLHLVLRL 306 (307)
T ss_dssp HHHHHHHHHCCCG--GGCEEEETTEECCTTSBTGGGTCCTTC------EEEEEC--
T ss_pred HHHHHHHHHCcCh--HHEEEEeCCeecCCCCCHHHcCCCCCC------EEEEEEeC
Confidence 4567888999996 999999999999999999999999998 99999986
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.00 E-value=3.3e-10 Score=86.36 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=44.3
Q ss_pred hhhhhhh---hcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEE-EEEeccCCCc
Q 034809 3 FHIYLAE---KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM-HVVLRPSLPD 62 (82)
Q Consensus 3 ~~~w~~e---~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tm-hlv~~~~~~~ 62 (82)
+.+-+++ ++|+|. ++|||||+||+|+|++||++|+|..++ +| ||+.++.++.
T Consensus 33 LK~~I~~~~~~~gip~--~~QrLiy~GK~L~D~~tL~dygI~~gs------tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 33 LKEKIEAEKGRDAFPV--AGQKLIYAGKILSDDVPIRDYRIDEKN------FVVVMVTKTKAGQ 88 (368)
T ss_dssp HHHHHHHHTCSSSCCS--TEEEEESSSSEECSSSBTTTTCCCTTS------CEEEEEECCCSSS
T ss_pred HHHHHHHHhCcCCCCh--hheEEEECCeecCCcCCHHHcCCCCCC------EEEEEEecCCCCC
Confidence 4556666 688996 999999999999999999999999988 55 8888887654
No 84
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.95 E-value=2e-10 Score=71.86 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=40.8
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
|.+-+++.+|+|+ ++|||||.||.|+|. ||++|+|..++ +|||+...
T Consensus 42 LK~~I~~~tgip~--~~QrL~~~Gk~Ldd~-tL~~~~i~~g~------~i~lv~~~ 88 (95)
T 1v86_A 42 LKQKIHSITGLPP--AMQKVMYKGLVPEDK-TLREIKVTSGA------KIMVVGST 88 (95)
T ss_dssp HHHHHHHHHCSCS--TTCCCBSSSBCCSSS-BHHHHCCCTTE------EEEECCSS
T ss_pred HHHHHHHHHCcCH--HHeEEEECCeeCCcC-cHHHCCCCCCC------EEEEEecc
Confidence 5566788999996 999999999999655 99999999888 99997654
No 85
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=2.2e-09 Score=67.53 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=43.1
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
.++.|+|. +++||||.|+.|+++.|+++|++..+| +||++++..++.
T Consensus 36 ~~~~gi~~--~~~rf~FdG~~l~~~~Tp~dl~medgD------~Idv~~~q~gg~ 82 (91)
T 2io0_B 36 CERQGLSM--RQIRFRFDGQPINETDTPAQLEMEDED------TIDVFQQQTGGV 82 (91)
T ss_dssp HHHTTCCS--TTEEEEETTEECCTTCCTTTTTCCTTE------EEEEEECCCCCC
T ss_pred HHHhCCCc--ccEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEEeccCCc
Confidence 56889986 999999999999999999999999999 999999987764
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.90 E-value=1.2e-09 Score=71.28 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=40.5
Q ss_pred hhhhhhhhcCCCCCCCceEEEecc---ee----cCCccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAG---KI----LEDNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~G---k~----Led~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+-+++++|+|+ ++|||||.| +. ++|++||++|+|+.|+ ||||+.-
T Consensus 33 lK~ki~~~~Gip~--~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~------~ihvvd~ 86 (122)
T 1t0y_A 33 LKKKLELVVGTTV--DSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGY------RIHAVDV 86 (122)
T ss_dssp HHHHHHHHHCCCT--TTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSE------EEEEEEC
T ss_pred HHHHHHHHhCCCH--HHeEEEEecCCCccccccCCCcCCHHHCCCCCCC------EEEEEeC
Confidence 4566789999996 999999988 43 4899999999999998 9999863
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.88 E-value=2e-09 Score=67.65 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=40.2
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
.++.|+|. +++||+|.|+.|.++.|+++|++..++ +||++++..|+
T Consensus 48 ~~~~gi~~--~~~rf~fdG~~l~~~~Tp~dl~medgD------~Idv~~~q~GG 93 (93)
T 2d07_B 48 CERQGLSM--RQIRFRFDGQPINETDTPAQLEMEDED------TIDVFQQQTGG 93 (93)
T ss_dssp HHHHTCCG--GGEEEEETTEECCTTCCTTTTTCCTTE------EEEEEECC---
T ss_pred HHHhCCCc--cceEEEECCEEcCCCCCHHHcCCCCCC------EEEEEeeccCC
Confidence 57889986 899999999999999999999999999 99999987664
No 88
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.78 E-value=3.5e-09 Score=68.17 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=43.1
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
.++.|+|. +++||||.|+.|.++.|+++|++..++ +|||+++..++.
T Consensus 55 ~ek~gi~~--~~~rf~FdG~~l~~~~Tp~dl~medgD------~Idv~~~q~GG~ 101 (104)
T 1wz0_A 55 CERQGLSM--RQIRFRFDGQPINETDTPAQLEMEDED------TIDVFQQQTSGP 101 (104)
T ss_dssp HHHHTCCT--TTSCEESSSSBCCTTSCTTTTTCCTTE------EEEECCCCCCCS
T ss_pred HHHhCCCc--ceEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEEeccCCC
Confidence 57889986 899999999999999999999999999 999999887764
No 89
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.78 E-value=6.4e-09 Score=67.38 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=40.2
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
.+++|++. +++||||+|+.|+++.|+++|++..++ +||++++..|+
T Consensus 61 ~ek~gi~~--~~~rF~FdG~rl~~~~Tp~dl~medgD------~Idv~~~q~GG 106 (106)
T 2eke_C 61 AKRQGKEM--DSLRFLYDGIRIQADQTPEDLDMEDND------IIEAHREQIGG 106 (106)
T ss_dssp HHHHTCCG--GGEEEEETTEECCTTCCTTTTTCCTTE------EEEEEECC---
T ss_pred HHHhCCCc--ccEEEEECCeEcCCCCCHHHcCCCCCC------EEEEEeecccC
Confidence 57889986 899999999999999999999999999 99999987664
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.76 E-value=7.5e-09 Score=61.81 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=37.4
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
.+++|+|. +++||+|.|+.|+++.|+++|++..|+ ++|+++
T Consensus 32 ~~~~gi~~--~~~rf~fdG~~l~~~~Tp~~l~medgD------~Idv~~ 72 (72)
T 1wm3_A 32 CERQGLSM--RQIRFRFDGQPINETDTPAQLEMEDED------TIDVFQ 72 (72)
T ss_dssp HHHHTCCT--TTCEEEETTEECCTTCCTTTTTCCTTE------EEEEEC
T ss_pred HHHhCCCc--ceEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEC
Confidence 46889986 999999999999999999999999999 999863
No 91
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.72 E-value=3.6e-09 Score=67.47 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=42.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecce-----------e----cCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGK-----------I----LEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk-----------~----Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-+++++|+|+ ++|||+|.|+ . ++|++||++|+|..|+ +|||+...
T Consensus 33 LK~kI~~~~gip~--~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~------~L~l~~~~ 95 (107)
T 1wf9_A 33 LKTLIQDQLQIPI--HNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS------MVYLAYEG 95 (107)
T ss_dssp HHHHHHHHSCCCT--TTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC------EEECCCSS
T ss_pred HHHHHHHHhCcCc--ccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCC------EEEEEeCC
Confidence 5677889999996 9999999999 4 6899999999999999 99998764
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.67 E-value=7.5e-09 Score=67.38 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=42.4
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
.++.|+|. +++||||.|+.|+++.|+++|++..++ +|||+++..++
T Consensus 57 ~ek~gi~~--~~~rfiFdG~~L~~~~Tp~dl~mEDgD------~Idv~~~q~Gg 102 (110)
T 2k8h_A 57 CKKQGISR--NSVRFLFDGTPIDETKTPEELGMEDDD------VIDAMVEQTGG 102 (110)
T ss_dssp HHHHTCCS--SSCEEESSSCBCCSSSHHHHHHCSSEE------EEEEECCCCCC
T ss_pred HHHhCCCc--ccEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEEcccCc
Confidence 56789986 899999999999999999999999999 99999988776
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.64 E-value=2.3e-08 Score=60.85 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=36.8
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEE
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
.++.|+|. +++||+|.|+.|+++.|+++|++..++ ++|+.
T Consensus 39 ~~~~gi~~--~~~rf~fdG~~l~~~~Tp~~l~medgD------~Idv~ 78 (79)
T 3a4r_A 39 EEAMGLSG--HKLSFFFDGTKLSGKELPADLGLESGD------LIEVW 78 (79)
T ss_dssp HHHHTCTT--CCCEEEETTEECCSCCCHHHHTCCTTC------EEEEE
T ss_pred HHHhCCCc--ccEEEEECCEEcCCCCCHHHcCCCCCC------EEEEe
Confidence 56889986 899999999999999999999999999 99985
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.55 E-value=2.5e-08 Score=74.45 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=41.5
Q ss_pred hhhhhhhhcCCCCCCCceEEE---ecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 3 FHIYLAEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI---~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
+.+=+++++|+|+ ++|||| |+||+|+|+.||++|+|+.|+ ||||+-.+.
T Consensus 30 lK~~I~~~tgVpp--~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~------~l~L~gs~~ 81 (320)
T 3shq_A 30 LRHEIFRKTQVRP--ERQKLLNLKYKGKTAADNVKISALELKPNF------KLMMVGSTE 81 (320)
T ss_dssp HHHHHHHHHCCCG--GGCEETTCBSSSSBCCTTSBTTSSCCC--C------EEEEECCCC
T ss_pred HHHHHHHHHCcCH--HHeEEeecccCCcccCccccHHHcCCCCCC------EEEEEccch
Confidence 5567889999996 999999 999999999999999999998 999975443
No 95
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.53 E-value=5.6e-08 Score=59.35 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=40.6
Q ss_pred hhhhhhhhcCCCCCCCceEEEec--ceecC---CccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHA--GKILE---DNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~--Gk~Le---d~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+.+++++|+|+ ++|||+|+ ||.|+ |++||++|||..|+ +|||.-.
T Consensus 26 Lk~~I~~~~gi~~--~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~------~l~v~~~ 77 (86)
T 2kzr_A 26 LQGQIAAITGIAP--GSQRILVGYPPECLDLSDRDITLGDLPIQSGD------MLIVEED 77 (86)
T ss_dssp HHHHHHHHTCCCT--TTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC------EEECCCC
T ss_pred HHHHHHHHhCCCc--cceEEEeCCCCcccccCCCCCCHHHcCCCCCC------EEEEEeC
Confidence 5678899999986 99999998 48885 78999999999998 9998754
No 96
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.37 E-value=4.5e-07 Score=64.41 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcccc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKG 65 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk~ 65 (82)
.+++|+|. +++||+|.|+.|.++.|.+++++..|| ++|++++..++.+..
T Consensus 59 ~er~Gi~~--~~~RF~FdG~rI~~~~TP~dL~MEdgD------~Idv~~~q~gg~kd~ 108 (200)
T 3pge_A 59 AKRQGKEM--DSLRFLYDGIRIQADQTPEDLDMEDND------IIEAHREQIGGGGET 108 (200)
T ss_dssp HHHHSSCG--GGEEEEETTEECCTTCCTTTTTCCTTE------EEEEEECCSCCC-CC
T ss_pred HHHhCCCh--hhEEEEECCEEcCCCCCHHHcCCCCCC------EEEEEeccCcCcCce
Confidence 57889986 999999999999999999999999999 999999999987653
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.16 E-value=3.5e-06 Score=55.32 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=39.3
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
.++.|++. +.+||+|.|+.|.++.|.+++++..+| +|+++++-.
T Consensus 71 ~er~Gl~~--~~irFlFDG~rI~~~~TP~dL~MEDgD------~IdV~~~Q~ 114 (115)
T 3kyd_D 71 CQRQGVPM--NSLRFLFEGQRIADNHTPKELGMEEED------VIEVYQEQC 114 (115)
T ss_dssp HHHHTCCT--TSEEEEETTEECCTTCCTTTTTCCTTC------EEEEEECCC
T ss_pred HHHhCCCh--hhEEEEECCeECCCCCCHHHcCCCCCC------EEEEEeecc
Confidence 46778875 999999999999999999999999999 999988643
No 98
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.00 E-value=4e-06 Score=60.07 Aligned_cols=49 Identities=6% Similarity=0.043 Sum_probs=44.4
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCccc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 64 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~kk 64 (82)
.++.|+|. +++||+|.|+.|.++.|.+++++.++| +|+++++..++.-.
T Consensus 87 cERqGL~~--~sIRFLFDGqRI~~ddTPeDLdMEDGD------tIDV~leQ~GG~~~ 135 (207)
T 3tix_A 87 AKRQGKEM--DSLTFLYDGIEIQADQTPEDLDMEDND------IIEAHREQIGGLPS 135 (207)
T ss_dssp HHHTTCCG--GGSCEEETTEECCSSCCTTTTTCCTTE------EEEECCCCCTTGGG
T ss_pred HHHhCCCc--ccEEEEECCeecCCCCCHHHcCCCCCC------EEEEEEeccCCCcc
Confidence 46789886 999999999999999999999999999 99999999888643
No 99
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.92 E-value=1.9e-05 Score=48.81 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=38.7
Q ss_pred hhhhhhhhcCCCCCCCceEEEecc------ee-c-CCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAG------KI-L-EDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~G------k~-L-ed~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.+-++...|+|+ ..|||+|.+ .. | +|.++|++|+|..|+ ++||+...
T Consensus 38 LK~~i~~~~gip~--~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~------~I~V~d~~ 93 (97)
T 1wjn_A 38 VKGLLSRLLKVPV--SELLLSYESSKMPGREIELENDLQPLQFYSVENGD------CLLVRWSG 93 (97)
T ss_dssp HHHHHHTTTTCCT--TTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC------EEEEECCS
T ss_pred HHHHHHHHHCCCh--hHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC------EEEEEecC
Confidence 4456777889996 999999873 22 4 789999999999999 99997743
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.74 E-value=4.3e-06 Score=60.61 Aligned_cols=47 Identities=6% Similarity=0.061 Sum_probs=1.3
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
.++.|++. +++|++|.|+.|.++.|.+++++.+|| +++++++..|+.
T Consensus 51 cERqGLs~--~siRFLFDGqRI~dddTPadL~MEDGD------tIDV~leQ~GG~ 97 (227)
T 3v7o_A 51 AKRQGKEM--DSLRFLYDGIRIQADQTPEDLDMEDND------IIEAHREQIGGL 97 (227)
T ss_dssp -----------------------------------------------------CC
T ss_pred HHHhCCCc--cceEEEECCEecCCCCCHHHcCCCCCC------EEEEEecccCCc
Confidence 46788886 999999999999999999999999999 999999988875
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.70 E-value=3.6e-05 Score=48.99 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=33.9
Q ss_pred chhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEE
Q 034809 2 NFHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 52 (82)
Q Consensus 2 ~~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tm 52 (82)
+|.+++++.+|||+ ++|||||.||.|.=+.+....+++..+ ++.+++|
T Consensus 38 ~~ke~V~eqTgIp~--~~Q~LL~eg~~l~l~p~~~a~~~p~Tt-~~~Pl~L 85 (94)
T 4efo_A 38 IFHELVYKQTKIIS--SNQELIYEGRRLVLEPGRLAQHFPKTT-EENPIFV 85 (94)
T ss_dssp HHHHHHHHHHCCCG--GGEEEEETTEEECCCTTCBGGGSCCCB-TTBCEEE
T ss_pred HHHHHHHHHhCCCH--HHHHHHhCCCccccCCCCccccCCCCC-CCCCEEE
Confidence 57899999999996 999999999998644444445555333 4334443
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.22 E-value=0.00057 Score=42.66 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=34.0
Q ss_pred hcCCCCCCC-ceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 10 KENGPKTVN-NVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 10 ~eg~P~s~~-~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+||. + .+||.|.|..|+.+.|++||.+.+++ .+.+++
T Consensus 42 ~~~I~~--~~~IrllFDGdRLdp~~tp~DlemeD~D------~IDvmL 81 (82)
T 3goe_A 42 EVKISF--HERIRLEFEGEWLDPNDQVQSTELEDED------QVSVVL 81 (82)
T ss_dssp HHTCCC--CTTCEEEETTEECCTTSBGGGSSCCTTC------EEEEEC
T ss_pred HcCCCc--CceEEEEEcCcccCccCChhhhCCcCCc------eeeeee
Confidence 567876 6 89999999999999999999999999 666654
No 103
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.15 E-value=6e-05 Score=57.56 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=1.3
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
.++.|++. +.+|++|.|+.|.++.|.+++++.+|| +++++++..++.+
T Consensus 51 ~~r~G~~~--~~~rFlFdG~rI~~~~TP~~L~MEDgD------~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 51 AKRQGKEM--DSLRFLYDGIRIQADQTPEDLDMEDND------IIEAHREQIGGMR 98 (360)
T ss_dssp ------------------------------------------------------CH
T ss_pred HHHhCCCc--ceEEEEECCeECCCCCChHHcCCCccc------hhhhhhccCchHH
Confidence 35778875 999999999999999999999999999 9999999999875
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.06 E-value=0.00064 Score=47.58 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=41.5
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
.++.|+|. +++||+|.|+.+.++.|..++++.+++ ++++..+..++
T Consensus 51 ~~~~g~~~--~~~~f~fdG~~i~~~~Tpk~L~~ed~d------~I~~~~eq~Gg 96 (209)
T 3uf8_A 51 AKRQGKEM--DSLRFLYDGIRIQADQTPEDLDMEDND------IIEAHREQIGG 96 (209)
T ss_dssp HHHHTCCG--GGCEEEETTEECCTTCCTTTTTCCTTE------EEEEECSCTTC
T ss_pred HHhhCCCh--heEEEEECCEeccCCCChHHhhhcccc------cchhhcccccc
Confidence 46789986 999999999999999999999999999 89988887775
No 105
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.59 E-value=0.00034 Score=52.30 Aligned_cols=48 Identities=4% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCcc
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 63 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~k 63 (82)
.++.|++. +++|++|.|+.|.++.|.+++++..++ ++++++...++..
T Consensus 60 ~~~~g~~~--~~~~f~f~G~~i~~~~Tp~~l~med~d------~i~~~~~q~gg~n 107 (389)
T 4da1_A 60 AKRQGKEM--DSLRFLYDGIRIQADQAPEDLDMEDND------IIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------
T ss_pred HHHhCCCc--ceEEEEECCEEcCCCCCHHHcCCCCCC------Eeeeeeccccccc
Confidence 45778876 999999999999999999999999999 9999888777754
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.51 E-value=0.0024 Score=40.43 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=33.0
Q ss_pred hhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEE
Q 034809 9 EKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 9 e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
++.|++. +.+|++|.|..|..+.|.+++++..+| +|.+
T Consensus 58 ~~~g~~~--~~vrF~FDG~rI~~~~TP~dLdMEDgD------~IDv 95 (97)
T 2jxx_A 58 EAMGLSG--RKLSFFFDGTKLSGRELPADLGMESGD------LIEV 95 (97)
T ss_dssp HHTTCSS--SCCEEEETTEECCSCSCHHHHTCCTTE------EEEE
T ss_pred HHHCCCc--ccEEEEECCEEcCCCCCHHHcCCCCCC------EEEE
Confidence 4567765 899999999999999999999999999 6655
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.87 E-value=0.0089 Score=38.03 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.8
Q ss_pred hhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEe
Q 034809 8 AEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 8 ~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
.++.|++. +.+|++|.|..+..+.|.+++++..++ ++.+++
T Consensus 51 c~r~gv~~--~sirFlfDG~rI~~~~TP~~L~meD~D------iID~~~ 91 (95)
T 2l76_A 51 ATHLGVSP--SRILLLFGETELSPTATPRTLKLGVAD------IIDCVV 91 (95)
T ss_dssp HHHHTSCG--GGEEEEETTEECCTTSCHHHHTCCSSC------EEEEEE
T ss_pred HhhcCCCh--hhEEEEECCcCCCCCCCHhHcCCCCCC------EEEEEE
Confidence 35778875 999999999999999999999999999 666654
No 108
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=90.29 E-value=0.18 Score=30.86 Aligned_cols=27 Identities=4% Similarity=0.279 Sum_probs=25.8
Q ss_pred CceEEEecceecCCccccccCCCCCCC
Q 034809 18 NNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 18 ~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
.++|...-|..|.++.+|+||+|..||
T Consensus 50 ~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 50 HWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp CEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred CEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 489999999999999999999999999
No 109
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=87.82 E-value=0.74 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=31.7
Q ss_pred hhhhhhhhcCCCCCCCceEEE--ecceec---CCccccccCCCCCCCCCCCcEEEEEE
Q 034809 3 FHIYLAEKENGPKTVNNVQLI--HAGKIL---EDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI--~~Gk~L---ed~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
+.+|++. .+.+ +...+|+ |-.|.| +.++||.|+|+...+ +|+|-
T Consensus 33 v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a------~L~ve 81 (84)
T 3qx1_A 33 VFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQE------TLFLE 81 (84)
T ss_dssp HHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEE------EEEEE
T ss_pred HHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCC------EEEEE
Confidence 4678877 4544 3778888 457888 457899999998655 77663
No 110
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=86.48 E-value=0.3 Score=29.14 Aligned_cols=44 Identities=5% Similarity=-0.025 Sum_probs=28.7
Q ss_pred hhhhhhhcCCCCCCCceEEEeccee-----cCCccccccCCCCCCCCCCCcEEEEEE
Q 034809 4 HIYLAEKENGPKTVNNVQLIHAGKI-----LEDNMTIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrLI~~Gk~-----Led~~tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
-+.+.+..++|. +.+.|.++-.. +.++.||+++||..|| +++|.
T Consensus 30 ~~~I~~~~~i~~--~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd------~l~l~ 78 (80)
T 2pjh_A 30 LKKVAKEFGFQN--NGFSVYINRNKTGEITASSSKSLHLLKIKHGD------LLFLF 78 (80)
T ss_dssp HHHHHHHTCCCT--TTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC------CEEC-
T ss_pred HHHHHHHcCCCC--CcceEEecCCCCCcccCCCCCCHHHcCCCCCC------EEEEe
Confidence 345666677775 44444333332 3478899999999999 77764
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=77.12 E-value=1.2 Score=29.29 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=21.1
Q ss_pred ceEEEe--cceecCCccccccCCCCCCC
Q 034809 19 NVQLIH--AGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 19 ~qrLI~--~Gk~Led~~tL~~~~i~~g~ 44 (82)
.+||-. .+..|++++||.++||..++
T Consensus 88 k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 88 KQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 455532 46899999999999999988
No 112
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=72.86 E-value=4 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred CCceEEEecceecCCccccccCCCCCCCCCCCcEEEEE
Q 034809 17 VNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHV 54 (82)
Q Consensus 17 ~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhl 54 (82)
|-.+||-|-|+..||++.=++|.+..|+ .|++|
T Consensus 60 PYyLRL~lP~~vved~~~~A~YD~d~g~-----~~v~l 92 (115)
T 3eud_A 60 PYYLRLRFPHELIDDERSTAQYDSKDEC-----INVKV 92 (115)
T ss_dssp TEEEEEECSSCEECSTTCEEEEETTTTE-----EEEEE
T ss_pred CeEEEEecCcceecCCCcceEEeCCCcE-----EEEEE
Confidence 5789999999999999988899998764 45555
No 113
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=67.06 E-value=5.8 Score=26.16 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=21.9
Q ss_pred ceEEEecceecCC-ccccccCCCCCCC
Q 034809 19 NVQLIHAGKILED-NMTIAESRLPVVE 44 (82)
Q Consensus 19 ~qrLI~~Gk~Led-~~tL~~~~i~~g~ 44 (82)
++||||.=-+=+| ++||++.|+..|+
T Consensus 46 ~~rLLyD~DfDDnl~k~L~dLgv~~gs 72 (127)
T 3onh_A 46 NQRLLFDYDFEDLNDRTLSEINLGNGS 72 (127)
T ss_dssp TTEEEEETTBCTTTTSBTTTTTCCTTC
T ss_pred CCCeEeCCCccccccCcHHHcCcCCCc
Confidence 6888888777665 7899999999877
No 114
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=65.00 E-value=22 Score=22.05 Aligned_cols=53 Identities=6% Similarity=0.092 Sum_probs=38.5
Q ss_pred hhhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCC
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLP 61 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~ 61 (82)
+++=.+.+-|+.- +.--+...+.+|+++++|.|-.++- + |.+.+.|-+....+
T Consensus 18 Lk~LLe~Rl~i~L--~~y~f~LQd~~L~~~k~LvdQcVqg-e---GlVQinvqik~~~~ 70 (89)
T 2juo_A 18 LKKLLEPRLQCSL--DAHEICLQDIQLDPDRSLFDQGVKT-D---GTVQLSVQVISYQG 70 (89)
T ss_dssp HHHHSHHHHCSCC--SSCEEEETTEECCTTSBTTTSSCCC-C---SEEEEEEEEECCTT
T ss_pred HHHHHHHHhcCCc--ccCeEEeeccccCCCccHHHhhccc-c---cEEEEEEEEEecCC
Confidence 4555567777776 6777777888899999999999984 3 35666666655444
No 115
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=62.57 E-value=3.5 Score=26.55 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.5
Q ss_pred ccccCCCCCCCCCCCcEEEEEEec
Q 034809 34 TIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 34 tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
||+.|+|++|. ||-|+.+
T Consensus 93 TL~HY~V~dga------tl~l~~~ 110 (111)
T 4e71_A 93 TLMHYNVRDGA------TLILSKV 110 (111)
T ss_dssp BHHHHTCCTTC------EEEEEEC
T ss_pred chhhcCCCCCC------EEEEEeC
Confidence 89999999998 8887765
No 116
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=62.12 E-value=6.3 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=23.4
Q ss_pred EEecceec-CCccccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 22 LIHAGKIL-EDNMTIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 22 LI~~Gk~L-ed~~tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
-++.|+.- +|++||++.+++.|| -|.+.+-++
T Consensus 108 sv~~g~~~~dd~kTL~~~rF~iGD------yidvaI~pP 140 (143)
T 4a6q_A 108 STMSGRKGTDDSMTLQSQKFQIGD------YLDIAITPP 140 (143)
T ss_dssp EEETTBCCTTTTCBTGGGTCCTTC------EEEEEEECG
T ss_pred EEecCCCCCcccccHHHCCCcCCC------EEEEEEeCC
Confidence 34555544 679999999999999 676666443
No 117
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=59.41 E-value=4.7 Score=26.12 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=16.4
Q ss_pred ccccCCCCCCCCCCCcEEEEEEecc
Q 034809 34 TIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 34 tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
||+.|+|++|. ||-|+.+.
T Consensus 97 TL~HY~V~dga------tl~l~~~~ 115 (117)
T 4e74_A 97 TLAHYQVPDGS------VVALVSKQ 115 (117)
T ss_dssp BHHHHTCCTTC------EEEEEECC
T ss_pred cccccCCCCCC------EEEEEeCC
Confidence 89999999998 88887764
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=58.45 E-value=14 Score=23.45 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=31.1
Q ss_pred hhhhhhhhcCCCCCCCceEEE--ecceec--C-CccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLI--HAGKIL--E-DNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI--~~Gk~L--e-d~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+|++.. +.+. ....|+ |=.|.| + .+.||.|+++.... +|+|..
T Consensus 69 V~~fV~~~-~~~~--~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa------~Liv~~ 118 (124)
T 1wj4_A 69 LVKHVQSK-GYPN--ERFELLTNFPRRKLSHLDYDITLQEAGLCPQE------TVFVQE 118 (124)
T ss_dssp HHHHHHHH-HCCT--TTEEEECSSSCCEETSSCSSSCTTTTTCCSSB------CCEEEE
T ss_pred HHHHHHhc-CCCC--CCeEEecCCCCcCCccCCCCCCHHHCCCCCce------EEEEEE
Confidence 46788765 5543 567776 558888 3 48999999997544 566543
No 119
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=57.29 E-value=9.2 Score=27.75 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=21.8
Q ss_pred CceEEEe------cceecCCccccccCCCCCCC
Q 034809 18 NNVQLIH------AGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 18 ~~qrLI~------~Gk~Led~~tL~~~~i~~g~ 44 (82)
++--|.- .|+.|++++||..|+++.++
T Consensus 45 ~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 45 NDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp GGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred HHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence 5555555 47889999999999999876
No 120
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=54.98 E-value=8.3 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.7
Q ss_pred cccccCCCCCCCCCCCcEEEEEEecc
Q 034809 33 MTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 33 ~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
-||+.|+|++|. ||-|+.+.
T Consensus 86 NTL~HY~V~dga------tv~l~~~~ 105 (127)
T 3h6n_A 86 NTLAHYKIPEGA------SLAMSLID 105 (127)
T ss_dssp CBTTTTTCCTTC------EEEEEECC
T ss_pred ccccccCCCCCC------EEEEEEcc
Confidence 389999999998 88887664
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=49.63 E-value=29 Score=21.36 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=34.4
Q ss_pred hcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 10 KENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 10 ~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
+.|+. +++-.|-|++|.||=+-.+.-.|++.+. ++-|+...
T Consensus 42 K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnA------kLELv~~s 82 (90)
T 2al3_A 42 RQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNA------KLEMVPVS 82 (90)
T ss_dssp HTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSC------EEEEECSS
T ss_pred HhCCC--hhhCeEEeCCEeccccceeEecCCCCCC------EEEEEEcc
Confidence 55665 4889999999999999999999999988 88886543
No 122
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=47.74 E-value=21 Score=22.00 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=32.4
Q ss_pred hhhhhhhhcCCCCCCCceEEE--ecceecC---CccccccCCCCCCCCCCCcEEEEEEec
Q 034809 3 FHIYLAEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLPVVELPGTAITMHVVLR 57 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI--~~Gk~Le---d~~tL~~~~i~~g~~p~~~~Tmhlv~~ 57 (82)
+.+|++...+.+. ....|+ |--|.|+ .++||.|+++.... +|+|...
T Consensus 39 v~~fV~~~~~~~~--~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa------~L~v~~~ 90 (109)
T 2dzk_A 39 ARQFAAQTVGNTY--GNFSLATMFPRREFTREDYKRRLLDLELAPSA------SVVLLPA 90 (109)
T ss_dssp HHHHHHHHHTTSS--CSCEEECSSSCCBCCTTTTTSBTGGGTCSSEE------EEEEECC
T ss_pred HHHHHHhccCCCC--CceEEEcCCCCcCCcccccCCCHHHCCCCCce------EEEEEEC
Confidence 5678887766554 456665 4577775 37899999998644 7777543
No 123
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=45.18 E-value=32 Score=21.00 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=30.6
Q ss_pred hhhhhhhhcCCCCCCCceEEE--ecceecC--CccccccCCCCCCCCCCCcEEEEEEe
Q 034809 3 FHIYLAEKENGPKTVNNVQLI--HAGKILE--DNMTIAESRLPVVELPGTAITMHVVL 56 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI--~~Gk~Le--d~~tL~~~~i~~g~~p~~~~Tmhlv~ 56 (82)
+.+|++.....+ ...+|+ |=.|.|+ .+.||.|+++.... +|+|..
T Consensus 49 v~~fv~~~~~~~---~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a------~L~Ve~ 97 (109)
T 2cr5_A 49 LLDWMMKVGYHK---SLYRLSTSFPRRALEVEGGSSLEDIGITVDT------VLNVEE 97 (109)
T ss_dssp HHHHHHHHTCCT---TTEEEECSSSCCBCCCCSSCBHHHHTCSSCE------EEEEEE
T ss_pred HHHHHHhcCCCC---CCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe------EEEEEe
Confidence 457877543323 567776 4477885 47899999998644 777654
No 124
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=41.73 E-value=16 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.0
Q ss_pred ccccCCCCCCCCCCCcEEEEEE
Q 034809 34 TIAESRLPVVELPGTAITMHVV 55 (82)
Q Consensus 34 tL~~~~i~~g~~p~~~~Tmhlv 55 (82)
||+.|+|++|. ||-|+
T Consensus 109 TL~HY~V~Dga------tlal~ 124 (126)
T 3kuz_A 109 TIGHYEISNGS------TIKVF 124 (126)
T ss_dssp BTGGGTCCTTC------EEEEE
T ss_pred cccccCCCCCC------EEEEe
Confidence 78899999988 77654
No 125
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=40.32 E-value=13 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.2
Q ss_pred ccccCCCCCCCCCCCcEEEEEEeccC
Q 034809 34 TIAESRLPVVELPGTAITMHVVLRPS 59 (82)
Q Consensus 34 tL~~~~i~~g~~p~~~~Tmhlv~~~~ 59 (82)
||+.|+|++|. ||-|+.+..
T Consensus 111 TL~HY~V~Dga------~l~l~~~~~ 130 (138)
T 2r2o_A 111 TLQHYKVPDGA------TVALVPCLT 130 (138)
T ss_dssp BHHHHTCCTTC------EEEEEEC--
T ss_pred chhccCCCCCC------EEEEEECCC
Confidence 89999999998 888877654
No 126
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=39.58 E-value=11 Score=26.03 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=11.0
Q ss_pred CceEEEecceecCCcccccc
Q 034809 18 NNVQLIHAGKILEDNMTIAE 37 (82)
Q Consensus 18 ~~qrLI~~Gk~Led~~tL~~ 37 (82)
+.||||+.|+.+.-..||-.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (201)
T 2vq5_A 3 GSQKLILTGRPFLHHQGIIN 22 (201)
T ss_dssp -CCEEEECCC------CTTG
T ss_pred ccceeeecCCCCCChhhhhh
Confidence 57999999999987777654
No 127
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=38.37 E-value=46 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.4
Q ss_pred hhhhhhhhcCCCCCCCceEEEecce-ecCCcc
Q 034809 3 FHIYLAEKENGPKTVNNVQLIHAGK-ILEDNM 33 (82)
Q Consensus 3 ~~~w~~e~eg~P~s~~~qrLI~~Gk-~Led~~ 33 (82)
+.+|++.-.+++. ++|.|+|.+. ..-++.
T Consensus 337 ~~~~~~~~t~i~~--~~q~~l~~~~~~~~~~~ 366 (396)
T 4eut_A 337 FHELVYKQTKIIS--SNQELIYEGRRLVLEPG 366 (396)
T ss_dssp HHHHHHHHHCCCS--TTEEEESSSSEECCCSS
T ss_pred HHHHHHHhcCCCh--hhhHHHhcCCCCCCCCC
Confidence 5678888899986 9999999994 443443
No 128
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=37.52 E-value=69 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=23.3
Q ss_pred ceEEEecc--eecCCccccccCCCCCCC
Q 034809 19 NVQLIHAG--KILEDNMTIAESRLPVVE 44 (82)
Q Consensus 19 ~qrLI~~G--k~Led~~tL~~~~i~~g~ 44 (82)
-+|..+.| +.|..+.|+++.+|.--+
T Consensus 48 ~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 48 ILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred eEEEEecCCccCCCCCCEeeccCCCCce
Confidence 68888999 999999999999998655
No 129
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=35.63 E-value=58 Score=19.93 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=25.3
Q ss_pred CCceEEEeccee--cCCccccccCCCCCCC
Q 034809 17 VNNVQLIHAGKI--LEDNMTIAESRLPVVE 44 (82)
Q Consensus 17 ~~~qrLI~~Gk~--Led~~tL~~~~i~~g~ 44 (82)
|.-+|.-..|+. |..+.|+++.||..-+
T Consensus 47 pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 47 EGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp SSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred CCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 568999999999 9999999999998766
No 130
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=34.62 E-value=88 Score=21.44 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=27.4
Q ss_pred hcCCCCCCC-ceEEEe-c----ceecCC-ccccccCCCCCCCCCCCcEEEEEEecc
Q 034809 10 KENGPKTVN-NVQLIH-A----GKILED-NMTIAESRLPVVELPGTAITMHVVLRP 58 (82)
Q Consensus 10 ~eg~P~s~~-~qrLI~-~----Gk~Led-~~tL~~~~i~~g~~p~~~~Tmhlv~~~ 58 (82)
.-++|. + +.||-. . ...|+| +.||.++++..+. ++-+-++.
T Consensus 174 ~~~i~~--~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q------~illE~r~ 221 (231)
T 3jyu_A 174 LFNIPA--ERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQ------VLVIEPQN 221 (231)
T ss_dssp HTTCCT--TSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTE------EEEEEECC
T ss_pred HhCCCC--CCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCC------EEEEEEec
Confidence 345664 5 699954 2 456776 5899999999866 55554443
No 131
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=33.39 E-value=60 Score=22.04 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=22.9
Q ss_pred hcCCCCCCC-ceEEEe-c----ceecCC-ccccccCCCCCCC
Q 034809 10 KENGPKTVN-NVQLIH-A----GKILED-NMTIAESRLPVVE 44 (82)
Q Consensus 10 ~eg~P~s~~-~qrLI~-~----Gk~Led-~~tL~~~~i~~g~ 44 (82)
.-++|. + +.||-. . ...|+| +.||.+++|..+.
T Consensus 162 ~~~i~~--~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 162 IFSIPD--EKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQ 201 (217)
T ss_dssp HTTCCT--TSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTC
T ss_pred HhCCCC--CCceEEEEecCCCCeeecCCCCCCHHHhCCCCCC
Confidence 346664 4 689843 2 345666 5799999999876
No 132
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=26.54 E-value=24 Score=20.53 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=28.1
Q ss_pred CchhhhhhhhcCC-CCCCCceEEEecceecCCcccc-ccCCCCCCC
Q 034809 1 MNFHIYLAEKENG-PKTVNNVQLIHAGKILEDNMTI-AESRLPVVE 44 (82)
Q Consensus 1 ~~~~~w~~e~eg~-P~s~~~qrLI~~Gk~Led~~tL-~~~~i~~g~ 44 (82)
|-++.|....... +. -.-++||-+|+++-|++.. ..+.+..|+
T Consensus 1 ~RLD~~L~~~~~~~sR-~~~~~li~~G~V~VNg~~~~~~~~v~~gd 45 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRR-VLATDMCNVGAVWLNGSCAKASKEVKAGD 45 (92)
T ss_dssp CBHHHHSTTTTSCCCC-CSSCCHHHHTCCEETTEECCTTCBCCTTC
T ss_pred ChHHHHHHHCCCCCCH-HHHHHHHHCCcEEECCEEcCCCCCcCCCC
Confidence 4566677664322 33 2267899999998888754 356677776
No 133
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=23.18 E-value=82 Score=20.56 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=24.2
Q ss_pred CCceEEEecceecCCccccccCCCCCCC
Q 034809 17 VNNVQLIHAGKILEDNMTIAESRLPVVE 44 (82)
Q Consensus 17 ~~~qrLI~~Gk~Led~~tL~~~~i~~g~ 44 (82)
|-.+||-|-|...||++.=+.|....+.
T Consensus 46 PYyLRL~LP~~V~e~~~~kA~YD~d~~~ 73 (134)
T 2k8q_A 46 PYYLRLRFPHELIDDERSTAQYDSKDEC 73 (134)
T ss_dssp SSCEEECCSSCEECCSSCEEEEETTTTE
T ss_pred CeEEEecCCCeeecCCCcceeEeccCCE
Confidence 5799999999999999888899887653
No 134
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=22.02 E-value=59 Score=21.67 Aligned_cols=51 Identities=6% Similarity=0.147 Sum_probs=32.5
Q ss_pred hhhhhhhcCCCCCCCceEEEecceecCCccccccCCCCCCCCCCCcEEEEEEeccCCCc
Q 034809 4 HIYLAEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 62 (82)
Q Consensus 4 ~~w~~e~eg~P~s~~~qrLI~~Gk~Led~~tL~~~~i~~g~~p~~~~Tmhlv~~~~~~~ 62 (82)
|=|.|...--|. ...++||+-|.+.++. .|+|...- -.+. +-+++.....+
T Consensus 56 RfWlQaeklS~~--a~~~~ifNdkei~~~~---~~ki~fD~-~tGi--IEmime~~~~e 106 (142)
T 2jtd_A 56 RFWMQAEKLSSN--AKVSYIFNEKEIFEGP---KYKMHIDR-NTGI--IEMFMEKLQDE 106 (142)
T ss_dssp EEEEECSCCTTC--CEEEEEETTEECCSSS---SCCEEECS-SSCC--EEEEECCCCTT
T ss_pred EEEEEhhhcCCC--ceEEEEeccceeccCC---CeeEeecc-cCCh--hhhhHhhcccc
Confidence 457776655565 7999999999999886 46666533 2233 34444444433
No 135
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=21.56 E-value=62 Score=20.35 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=25.9
Q ss_pred hhhhhhhh-cCCCCCCCceEEE--ecceecCC-ccccccCCCCC
Q 034809 3 FHIYLAEK-ENGPKTVNNVQLI--HAGKILED-NMTIAESRLPV 42 (82)
Q Consensus 3 ~~~w~~e~-eg~P~s~~~qrLI--~~Gk~Led-~~tL~~~~i~~ 42 (82)
+.+|++.. .+... ....|+ |-.|.|+| +.||.|+++..
T Consensus 78 v~~fV~~~~~~~~~--~~f~L~t~fPrk~l~d~~~TL~eagL~p 119 (127)
T 1s3s_G 78 IRLFIVDARPAMAA--TSFVLMTTFPNKELADENQTLKEANLLN 119 (127)
T ss_dssp HHHHHHHHCSGGGT--SCEEEEETTTTEECCSTTCBHHHHTCSS
T ss_pred HHHHHHHhCcCCCC--CCeEEecCCCCCCCCCCCCcHHHCCCcC
Confidence 46777764 23332 456776 45788865 78999999974
Done!