Query 034810
Match_columns 82
No_of_seqs 102 out of 174
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01249 Ribosomal_S21e: Ribos 100.0 1.1E-56 2.5E-61 294.8 3.5 80 1-80 1-80 (81)
2 KOG3486 40S ribosomal protein 100.0 1.9E-50 4.1E-55 266.5 3.9 81 1-81 1-82 (83)
3 PF06079 Apyrase: Apyrase; In 74.3 1.4 2.9E-05 35.1 0.7 32 11-42 185-231 (291)
4 PTZ00486 apyrase Superfamily; 48.5 8.3 0.00018 31.5 0.9 31 11-41 248-292 (352)
5 KOG4207 Predicted splicing fac 44.5 9.3 0.0002 30.0 0.5 39 5-71 37-75 (256)
6 cd05759 Ig2_KIRREL3-like Secon 42.5 12 0.00026 22.2 0.7 21 16-36 62-82 (82)
7 PF10114 PocR: Sensory domain 36.8 39 0.00085 22.8 2.6 34 45-78 93-128 (173)
8 PF00970 FAD_binding_6: Oxidor 36.8 50 0.0011 20.1 2.9 39 4-46 31-76 (99)
9 PF13990 YjcZ: YjcZ-like prote 35.6 11 0.00023 29.8 -0.3 14 7-20 246-259 (270)
10 cd04977 Ig1_NCAM-1_like First 29.1 27 0.00058 21.5 0.8 20 16-36 73-92 (92)
11 cd05732 Ig5_NCAM-1_like Fifth 28.9 25 0.00054 21.1 0.6 19 16-36 78-96 (96)
12 cd04969 Ig5_Contactin_like Fif 26.1 28 0.00061 20.1 0.4 19 16-36 55-73 (73)
13 cd05870 Ig5_NCAM-2 Fifth immun 25.7 33 0.00071 21.1 0.7 19 16-36 80-98 (98)
14 cd04978 Ig4_L1-NrCAM_like Four 24.3 31 0.00068 19.6 0.4 19 16-36 57-75 (76)
15 PRK00042 tpiA triosephosphate 24.1 1.1E+02 0.0025 23.2 3.5 49 30-78 56-121 (250)
16 smart00634 BID_1 Bacterial Ig- 23.9 1.7E+02 0.0037 18.1 3.8 36 22-57 10-46 (92)
17 PF07976 Phe_hydrox_dim: Pheno 23.7 52 0.0011 23.1 1.5 29 44-73 57-85 (169)
18 PRK14890 putative Zn-ribbon RN 23.4 55 0.0012 20.6 1.4 18 13-30 6-23 (59)
19 TIGR00419 tim triosephosphate 23.2 94 0.002 23.0 2.8 45 32-78 53-112 (205)
20 cd05773 Ig8_hNephrin_like Eigh 22.3 43 0.00093 21.4 0.8 20 16-37 86-105 (109)
21 COG2888 Predicted Zn-ribbon RN 22.1 53 0.0012 20.9 1.1 24 9-32 4-27 (61)
22 KOG0280 Uncharacterized conser 21.6 59 0.0013 26.7 1.6 57 4-64 186-246 (339)
23 cd00311 TIM Triosephosphate is 20.0 1.6E+02 0.0034 22.3 3.5 49 30-78 54-119 (242)
No 1
>PF01249 Ribosomal_S21e: Ribosomal protein S21e ; InterPro: IPR001931 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 82 to 87 amino acids. The amino termini are all N alpha-acetylated. The N-terminal halves of the protein molecules are highly conserved in contrast to the carboxy-terminal parts [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_V 3U5C_V 3IZB_T 2XZN_Z 2XZM_Z 3IZ6_T.
Probab=100.00 E-value=1.1e-56 Score=294.81 Aligned_cols=80 Identities=58% Similarity=1.004 Sum_probs=75.2
Q ss_pred CccccCceeeeeeeccccCcCCcccCCCCcceEeEeeeeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhcccchh
Q 034810 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEVR 80 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~ 80 (82)
||||+|+|||||||||||||||||+|||||||||||++||++|+|||+++||||||+||+|||||+||+|||+++|++++
T Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~aKDHaSvQinv~~vd~~G~~~g~~~t~ai~G~iR~~GesD~~l~rL~~~~g~l~~ 80 (81)
T PF01249_consen 1 MQNDAGEFVDLYIPRKCSATNRIISAKDHASVQINVADVDENGRFTGQFKTYAICGFIRRMGESDDALNRLAKKDGLLSK 80 (81)
T ss_dssp -CHCCCHC-SSSHHHCHTTTHHCHHTTSTTSEEEEEEEE-SSS-EEEEEEEEEEHHHHHHTTHHHHHHHHHHHHTCCCSS
T ss_pred CcCcCCcEEEEeccccccccCCccccCCceeEEEEeeeecCcccCcCCceEEEEechHhhCcchhHHHHHHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
No 2
>KOG3486 consensus 40S ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-50 Score=266.46 Aligned_cols=81 Identities=68% Similarity=1.143 Sum_probs=78.4
Q ss_pred CccccCceeeeeeeccccCcCCcccCCCCcceEeEeeeeCCC-ceeeCceeEEEEehhhhhcccchHHHHHHHHhcccch
Q 034810 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEV 79 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~~-G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~ 79 (82)
||||+|+|||||||||||+|||||.||||||||||+++||+. |.|+|+++||||||+||+|||||++++||++++|++.
T Consensus 1 MqNdaGe~v~LYvPrKcS~sNriI~aKDHaSVQ~N~~~vd~~g~~~~g~~ttyAlcg~vr~~gesd~~~~rl~~~~~~~~ 80 (83)
T KOG3486|consen 1 MQNDAGQFVELYVPRKCSATNRIITAKDHASVQLNIGHVDAEGGLYTGQFTTYALCGFVRRMGESDSGVDRLAQKDGVEA 80 (83)
T ss_pred CCCCCcceeEEEecccccccceeeecccchheeecccccccccCccCCceehHHHHHHHHHcCCCcchHHHHHHhccccc
Confidence 999999999999999999999999999999999999999998 5699999999999999999999999999999999987
Q ss_pred hc
Q 034810 80 RQ 81 (82)
Q Consensus 80 ~~ 81 (82)
++
T Consensus 81 ~~ 82 (83)
T KOG3486|consen 81 KQ 82 (83)
T ss_pred cc
Confidence 65
No 3
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=74.30 E-value=1.4 Score=35.08 Aligned_cols=32 Identities=34% Similarity=0.842 Sum_probs=17.0
Q ss_pred eeeecccc------------CcCCcccC-CCCcceEeE-ee-eeCCC
Q 034810 11 LYIPRKCS------------ATNRLITS-KDHAAVQIN-IG-HVDAD 42 (82)
Q Consensus 11 lYiPRKCS------------~TnriI~a-kDHaSVQIn-v~-~vd~~ 42 (82)
..+||+|| .+|-||.| .|..+|+.. |+ .++|+
T Consensus 185 fFLPRr~S~e~Y~e~~DE~~G~N~li~a~edF~~i~v~~ig~~~~p~ 231 (291)
T PF06079_consen 185 FFLPRRCSKEPYDETADERRGCNLLISADEDFSDIKVIRIGEQLDPT 231 (291)
T ss_dssp EE--SEEESS---HHHHTT-B--EEEEE-TTSSSEEEEE-S----TT
T ss_pred EEeccccccccccchhhhhcCccEEEEeccCcceeEEEEeCCccCcc
Confidence 36799999 58999888 566776643 55 67763
No 4
>PTZ00486 apyrase Superfamily; Provisional
Probab=48.54 E-value=8.3 Score=31.48 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=19.8
Q ss_pred eeeeccccC------------cCCcccCCCC-cceEe-EeeeeCC
Q 034810 11 LYIPRKCSA------------TNRLITSKDH-AAVQI-NIGHVDA 41 (82)
Q Consensus 11 lYiPRKCS~------------TnriI~akDH-aSVQI-nv~~vd~ 41 (82)
..+||+||- +|.||.+.+| .+++. .++..+|
T Consensus 248 ~FlPRr~S~e~Yde~~DE~~G~N~ii~~de~F~~i~vi~i~~~~p 292 (352)
T PTZ00486 248 YFLPRRVSNEPYDEEKDEYRGSNYIIICDEDFQNPRVIKDPQYDP 292 (352)
T ss_pred EEeccccCcccccchhhhhcCCcEEEEecccccceEEEecCCCCC
Confidence 367999995 6888886644 44442 2445555
No 5
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=44.46 E-value=9.3 Score=30.02 Aligned_cols=39 Identities=41% Similarity=0.652 Sum_probs=25.6
Q ss_pred cCceeeeeeeccccCcCCcccCCCCcceEeEeeeeCCCceeeCceeEEEEehhhhhcccchHHHHHH
Q 034810 5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSALDRL 71 (82)
Q Consensus 5 ~g~~VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL 71 (82)
-|+++|+||||. +||++..-|||--| --+-++++|+.+|
T Consensus 37 YG~vgDVyIPrd---------------------------r~Tr~sRgFaFVrf-~~k~daedA~dam 75 (256)
T KOG4207|consen 37 YGRVGDVYIPRD---------------------------RYTRQSRGFAFVRF-HDKRDAEDALDAM 75 (256)
T ss_pred hCcccceecccc---------------------------cccccccceeEEEe-eecchHHHHHHhh
Confidence 388999999984 56777777775422 2344566666655
No 6
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=42.49 E-value=12 Score=22.20 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=17.0
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
.|.++|.-+..-=++|++++|
T Consensus 62 ~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 62 TCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEcCccCCCCcEEEEEEcC
Confidence 488888888777788888875
No 7
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=36.82 E-value=39 Score=22.76 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=27.1
Q ss_pred eeCceeEEEEehhhhhcccchHH--HHHHHHhcccc
Q 034810 45 YTGQFSTFALCGFVRAQGDGDSA--LDRLWQKKKAE 78 (82)
Q Consensus 45 ~tg~~~t~ai~G~iR~~GesD~~--l~rL~~~~~~~ 78 (82)
+.|++.-|.++|.++-....++. +.+++++.++-
T Consensus 93 ~~g~~iG~i~~G~v~~~~~~~~~~~~~~~a~~~~~~ 128 (173)
T PF10114_consen 93 VDGEYIGYIICGQVLLEDPDDESELIRELAKKYGID 128 (173)
T ss_pred ECCEEEEEEEEEEeecCCCchhHHHHHHHHHHcCCC
Confidence 45677778999999998888877 88888877653
No 8
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=36.81 E-value=50 Score=20.07 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=22.7
Q ss_pred ccCceeeeeee-------ccccCcCCcccCCCCcceEeEeeeeCCCceee
Q 034810 4 EEGQNMDLYIP-------RKCSATNRLITSKDHAAVQINIGHVDADGIYT 46 (82)
Q Consensus 4 d~g~~VDlYiP-------RKCS~TnriI~akDHaSVQInv~~vd~~G~~t 46 (82)
..|++|.+.+| |--|.++.. .+...++|-|... ++|.++
T Consensus 31 ~pGQ~v~v~~~~~~~~~~R~yS~~s~~---~~~~~~~~~ik~~-~~G~~S 76 (99)
T PF00970_consen 31 KPGQFVSVRVPINGKQVSRPYSPASSP---DDKGYLEFAIKRY-PNGRVS 76 (99)
T ss_dssp TTT-EEEEEEEETTEEEEEEEEBCSST---TSSSEEEEEEEEC-TTSHHH
T ss_pred CcceEEEEEEccCCcceecceeEeeec---CCCCcEEEEEEec-cCCHHH
Confidence 35899999888 444444333 3445677777665 455544
No 9
>PF13990 YjcZ: YjcZ-like protein
Probab=35.57 E-value=11 Score=29.81 Aligned_cols=14 Identities=57% Similarity=0.869 Sum_probs=12.2
Q ss_pred ceeeeeeeccccCc
Q 034810 7 QNMDLYIPRKCSAT 20 (82)
Q Consensus 7 ~~VDlYiPRKCS~T 20 (82)
+.|-|++||-||+.
T Consensus 246 ~~v~l~mPrlcsA~ 259 (270)
T PF13990_consen 246 QNVALGMPRLCSAE 259 (270)
T ss_pred cccccCcchhccHH
Confidence 56889999999985
No 10
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=29.13 E-value=27 Score=21.50 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=14.0
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
+|.++|..-. +..+||.+.|
T Consensus 73 ~C~A~N~~g~-~~~~sv~l~~ 92 (92)
T cd04977 73 KCVATDAKGT-ESEATVNLKI 92 (92)
T ss_pred EEEEEcCCCC-cceeEEEEEC
Confidence 6999997644 5567777754
No 11
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=28.91 E-value=25 Score=21.06 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=11.3
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
.|.++|.+ ..+.+|+++.|
T Consensus 78 ~C~a~N~~--G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRI--GGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCC--CCcEEEEEEeC
Confidence 57777765 23466666553
No 12
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=26.07 E-value=28 Score=20.08 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=12.2
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
+|.+.|.+ ..++++++++|
T Consensus 55 ~C~a~N~~--G~~~~~~~l~V 73 (73)
T cd04969 55 TCFAENFF--GKANSTGSLSV 73 (73)
T ss_pred EEEEECCC--CceEEEEEEEC
Confidence 57777774 44566666654
No 13
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=25.74 E-value=33 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=10.7
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
.|.|+|.+= .+++|++++|
T Consensus 80 ~C~A~N~~G--~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIG--GHQKSMYLDI 98 (98)
T ss_pred EEEEeccCC--cceeEEEEeC
Confidence 466666652 3455666654
No 14
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=24.26 E-value=31 Score=19.62 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=9.7
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
.|.++|.. ..+.++++++|
T Consensus 57 ~C~A~N~~--G~~~~~~~l~V 75 (76)
T cd04978 57 QCNASNVH--GYLLANAFVHV 75 (76)
T ss_pred EEEEEccC--CeEEEeEEEEE
Confidence 46666652 22445555554
No 15
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=24.07 E-value=1.1e+02 Score=23.15 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=34.8
Q ss_pred cceEeEeeeeCC--CceeeCcee---------EEEEehhhhh---cccchHHHHH---HHHhcccc
Q 034810 30 AAVQINIGHVDA--DGIYTGQFS---------TFALCGFVRA---QGDGDSALDR---LWQKKKAE 78 (82)
Q Consensus 30 aSVQInv~~vd~--~G~~tg~~~---------t~ai~G~iR~---~GesD~~l~r---L~~~~~~~ 78 (82)
..+.+--.+++. .|.|||+.. .|+|-|-=-| .||+|+.+++ .|.+.|+.
T Consensus 56 ~~i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~ 121 (250)
T PRK00042 56 SNIKLGAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLT 121 (250)
T ss_pred CCeEEEecccccccCCCccCccCHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCE
Confidence 356666666776 599999974 5666665444 3999999998 55667765
No 16
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=23.90 E-value=1.7e+02 Score=18.11 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=26.5
Q ss_pred CcccCCCCcceEeEeeeeCCCce-eeCceeEEEEehh
Q 034810 22 RLITSKDHAAVQINIGHVDADGI-YTGQFSTFALCGF 57 (82)
Q Consensus 22 riI~akDHaSVQInv~~vd~~G~-~tg~~~t~ai~G~ 57 (82)
.-|.|......+|.+-.+|++|. ..+..-+|.+.|.
T Consensus 10 ~~~~Adg~d~~~i~v~v~D~~Gnpv~~~~V~f~~~~~ 46 (92)
T smart00634 10 DTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSG 46 (92)
T ss_pred CcEEEcCcccEEEEEEEECCCCCCcCCCEEEEEECCC
Confidence 34566656677888888999887 7787788887653
No 17
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=23.74 E-value=52 Score=23.15 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=19.2
Q ss_pred eeeCceeEEEEehhhhhcccchHHHHHHHH
Q 034810 44 IYTGQFSTFALCGFVRAQGDGDSALDRLWQ 73 (82)
Q Consensus 44 ~~tg~~~t~ai~G~iR~~GesD~~l~rL~~ 73 (82)
..+|+|..|.++|.++.... -..|..|+.
T Consensus 57 ~sdGrfri~vFagd~~~~~~-~~~l~~l~~ 85 (169)
T PF07976_consen 57 PSDGRFRILVFAGDISLPEQ-LSRLSALAD 85 (169)
T ss_dssp -SSS-EEEEEEEETTTTCHC-CCHHHHHHH
T ss_pred ccCCCEEEEEEeCCCccchh-HHHHHHHHH
Confidence 35789999999999999442 244555543
No 18
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=23.42 E-value=55 Score=20.57 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.9
Q ss_pred eeccccCcCCcccCCCCc
Q 034810 13 IPRKCSATNRLITSKDHA 30 (82)
Q Consensus 13 iPRKCS~TnriI~akDHa 30 (82)
-|.+|+..|+.|+..+++
T Consensus 6 ~~~~CtSCg~~i~~~~~~ 23 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA 23 (59)
T ss_pred cCccccCCCCcccCCCcc
Confidence 477999999999999986
No 19
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=23.23 E-value=94 Score=23.03 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=29.3
Q ss_pred eEeEeeeeCC--CceeeCcee---------EEEEehh-hhhcccchHHHHH---HHHhcccc
Q 034810 32 VQINIGHVDA--DGIYTGQFS---------TFALCGF-VRAQGDGDSALDR---LWQKKKAE 78 (82)
Q Consensus 32 VQInv~~vd~--~G~~tg~~~---------t~ai~G~-iR~~GesD~~l~r---L~~~~~~~ 78 (82)
+.+--.+++. .|.|||+.. .|+|-|- =||.||+| +++ .|.+.||.
T Consensus 53 i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERRf~Etd--i~~Kv~~a~~~gl~ 112 (205)
T TIGR00419 53 IPVYAQHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD--IEKKIARLKELGLT 112 (205)
T ss_pred ceEEecccccccCCCccCcCCHHHHHHcCCCEEEECcccCCCCccH--HHHHHHHHHHCCCE
Confidence 4554455665 699999985 5666553 45689999 666 44555554
No 20
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=22.28 E-value=43 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=14.5
Q ss_pred cccCcCCcccCCCCcceEeEee
Q 034810 16 KCSATNRLITSKDHAAVQINIG 37 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv~ 37 (82)
.|.|+|.+ ..|.+++|+.+.
T Consensus 86 ~C~A~N~~--G~~~~~i~L~~~ 105 (109)
T cd05773 86 TCTAHNSL--GEDSLDIQLVST 105 (109)
T ss_pred EEEEEeCC--ccCcEEEEEEec
Confidence 58888887 446777777765
No 21
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.11 E-value=53 Score=20.86 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.8
Q ss_pred eeeeeeccccCcCCcccCCCCcce
Q 034810 9 MDLYIPRKCSATNRLITSKDHAAV 32 (82)
Q Consensus 9 VDlYiPRKCS~TnriI~akDHaSV 32 (82)
+....|..|+..++.|+.-.++++
T Consensus 4 ~~~~~~~~CtSCg~~i~p~e~~v~ 27 (61)
T COG2888 4 MEMKDPPVCTSCGREIAPGETAVK 27 (61)
T ss_pred ccccCCceeccCCCEeccCCceeE
Confidence 344459999999999998887753
No 22
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=21.57 E-value=59 Score=26.65 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=37.4
Q ss_pred ccCce--eeeeeeccccCcCCcccCCCCcceEeEeeeeCC--CceeeCceeEEEEehhhhhcccc
Q 034810 4 EEGQN--MDLYIPRKCSATNRLITSKDHAAVQINIGHVDA--DGIYTGQFSTFALCGFVRAQGDG 64 (82)
Q Consensus 4 d~g~~--VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~--~G~~tg~~~t~ai~G~iR~~Ges 64 (82)
|+|.+ -|+=||-+|.|+|.-+. .|=-..|-.-.+ .=.+||++.-+.-.=..|.||+.
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH----~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVH----TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred CCceEEEEEecCCcceeeecceee----ecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 34443 47889999999987664 443333434344 45678888777666677888873
No 23
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.04 E-value=1.6e+02 Score=22.29 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=34.3
Q ss_pred cceEeEeeeeCC--CceeeCcee---------EEEEehhhhhc---ccchHHHHH---HHHhcccc
Q 034810 30 AAVQINIGHVDA--DGIYTGQFS---------TFALCGFVRAQ---GDGDSALDR---LWQKKKAE 78 (82)
Q Consensus 30 aSVQInv~~vd~--~G~~tg~~~---------t~ai~G~iR~~---GesD~~l~r---L~~~~~~~ 78 (82)
+.+.+---+++. .|.|||+.. .|+|-|-=-|+ ||+|+-+++ .|.+.|+.
T Consensus 54 ~~i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~ 119 (242)
T cd00311 54 SKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLT 119 (242)
T ss_pred CCeEEEecccccccCCCCcCcCCHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCE
Confidence 446665556666 699999974 57776655554 899999998 45556654
Done!