Query 034810
Match_columns 82
No_of_seqs 102 out of 174
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_V S26, YS25, 40S ribosoma 100.0 1.3E-56 4.3E-61 297.1 7.5 81 1-81 1-82 (87)
2 2xzm_Z RPS21E; ribosome, trans 100.0 4.7E-55 1.6E-59 294.3 7.9 81 1-82 16-97 (97)
3 3iz6_T 40S ribosomal protein S 100.0 5.3E-57 1.8E-61 296.3 -6.1 82 1-82 1-82 (82)
4 1s1d_A Apyrase; adpase, five-b 67.3 1.7 5.9E-05 34.0 1.0 32 11-42 226-271 (331)
5 2c1s_A Biotin binding protein 38.9 12 0.00041 25.3 1.3 23 29-52 15-37 (126)
6 4frw_A Poliovirus receptor-rel 31.6 10 0.00036 23.0 0.1 24 16-39 191-214 (218)
7 2jgs_A Circular permutant of a 29.5 22 0.00074 24.5 1.4 35 14-51 93-127 (130)
8 1wid_A DNA-binding protein RAV 27.4 1E+02 0.0034 19.8 4.4 39 4-44 22-62 (130)
9 4fmk_A Poliovirus receptor-rel 25.9 14 0.00047 22.6 -0.1 21 16-36 197-217 (225)
10 1wny_A Isoleucyl-tRNA syntheta 24.8 26 0.0009 23.9 1.2 38 37-80 142-179 (186)
11 3p34_A Serine/threonine-protei 24.5 1.1E+02 0.0036 22.3 4.5 51 20-75 164-222 (232)
12 2zg1_A Sialic acid-binding IG- 21.9 19 0.00066 22.4 0.0 21 16-36 193-213 (214)
13 2di7_A BK158_1; beta-sandwich, 21.6 17 0.00059 23.9 -0.3 34 24-57 63-97 (124)
14 1uhe_A Aspartate 1-decarboxyla 20.4 57 0.0019 21.3 2.1 21 33-57 18-38 (97)
No 1
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=100.00 E-value=1.3e-56 Score=297.10 Aligned_cols=81 Identities=48% Similarity=0.854 Sum_probs=79.3
Q ss_pred CccccCceeeeeeeccccCcCCcccCCCCcceEeEeeeeCCCcee-eCceeEEEEehhhhhcccchHHHHHHHHhcccch
Q 034810 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIY-TGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEV 79 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~~G~~-tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~ 79 (82)
||||+|++||||||||||||||||+|||||||||||++||++|+| ||+++||||||+||+|||||+||||||+++|+++
T Consensus 1 MqNd~g~~VDLYiPRKCSaTNriI~AKDHaSVQIni~~vd~~G~~i~g~~~tyai~G~iR~~GesD~~l~rLa~~~g~l~ 80 (87)
T 3u5c_V 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLLK 80 (87)
T ss_dssp CCCSSSCCCSSCCCCCCTTTCCCCCTTCTTCEEEEEECCCSSSCCCSSCEEEEEECHHHHHTTCHHHHHHHHHHTTTSCC
T ss_pred CcCcCCcEEEEEccccccccCCceecCCcceEEEeeeeECCcccEeCCCeeEEEEehhhhhCcchHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999987
Q ss_pred hc
Q 034810 80 RQ 81 (82)
Q Consensus 80 ~~ 81 (82)
..
T Consensus 81 ~~ 82 (87)
T 3u5c_V 81 NV 82 (87)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 2
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=100.00 E-value=4.7e-55 Score=294.25 Aligned_cols=81 Identities=35% Similarity=0.626 Sum_probs=79.5
Q ss_pred CccccCceeeeeeeccccCcCCcccCCCCcceEeEeeeeCCCceee-CceeEEEEehhhhhcccchHHHHHHHHhcccch
Q 034810 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT-GQFSTFALCGFVRAQGDGDSALDRLWQKKKAEV 79 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~~G~~t-g~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~ 79 (82)
||||+|++||||||||||||||||+|||||||||||++||++|+|| |+++|| |||+||+|||||+||||||+++|+++
T Consensus 16 MqNd~G~~VDLYiPRKCSaTNRiI~AKDHaSVQInIa~vd~~G~~~~g~~~ty-icG~iR~~GesDdal~rL~~~~g~l~ 94 (97)
T 2xzm_Z 16 LINDKKEKIDAYLPRKCDWSNKLIFSNDQSSVQIAIAEVGENGQATGSKTNVV-LCGSVRSKGEAHIALENILRERGLYP 94 (97)
T ss_dssp CBCTTCCBCSSSCCCBCTTTCCBCCSSCTTCEEEEEEEECSSSCEEEEEEEEE-ECHHHHHTTCHHHHHHHHHHHTTCSS
T ss_pred cccCCCcEEeEeccccccccCCccccCCceeEEEEhhhcCccccccCCCceEE-EechhhcCcchHHHHHHHHHHcCCcc
Confidence 9999999999999999999999999999999999999999999999 999999 99999999999999999999999998
Q ss_pred hcC
Q 034810 80 RQQ 82 (82)
Q Consensus 80 ~~~ 82 (82)
+++
T Consensus 95 ~~~ 97 (97)
T 2xzm_Z 95 IQE 97 (97)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 3
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-57 Score=296.27 Aligned_cols=82 Identities=79% Similarity=1.282 Sum_probs=79.9
Q ss_pred CccccCceeeeeeeccccCcCCcccCCCCcceEeEeeeeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhcccchh
Q 034810 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEVR 80 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQInv~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~ 80 (82)
||||+|+|||||||||||||||||+|||||||||||++||++|+|||+++||||||+||+|||||+||||||+++|.+.+
T Consensus 1 MqNd~g~~VDLYiPRKCSaTNriI~AKDHaSVQInv~~vd~~G~~~g~~~tyai~G~iR~~GesD~~l~rL~~~~~~~~~ 80 (82)
T 3iz6_T 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVK 80 (82)
T ss_dssp CHHHHHHHCSCHHHHHHHHHHHHHHTTSSSSCCCCCEEECSSSCEEEECCCCSCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CcCcCCcEEEEeccccccccCCccccCCceeEEEEEEEEcCCccCCCCeeEEEEehhhhhCcchHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cC
Q 034810 81 QQ 82 (82)
Q Consensus 81 ~~ 82 (82)
+|
T Consensus 81 ~~ 82 (82)
T 3iz6_T 81 QQ 82 (82)
T ss_dssp HC
T ss_pred cC
Confidence 64
No 4
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=67.27 E-value=1.7 Score=34.02 Aligned_cols=32 Identities=25% Similarity=0.634 Sum_probs=23.6
Q ss_pred eeeeccccC------------cCCcccCC-CCcceEe-EeeeeCCC
Q 034810 11 LYIPRKCSA------------TNRLITSK-DHAAVQI-NIGHVDAD 42 (82)
Q Consensus 11 lYiPRKCS~------------TnriI~ak-DHaSVQI-nv~~vd~~ 42 (82)
..+||+||- +|-||.|. |..+|++ .|+.++|+
T Consensus 226 ~FLPRr~S~e~Yde~~DE~~G~N~li~a~edF~~i~v~~i~~~~p~ 271 (331)
T 1s1d_A 226 FFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPT 271 (331)
T ss_dssp EECCSEEESSCCCHHHHTTCBCCEEEEECTTSSCEEEEECSCCCTT
T ss_pred EEeccccCcCcccchhhhhcCccEEEEecCCcceeEEEEcCCCCCc
Confidence 467999985 67888866 7778775 46667764
No 5
>2c1s_A Biotin binding protein A; HET: BSO; 1.75A {Gallus gallus} PDB: 2c1q_A*
Probab=38.92 E-value=12 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=18.0
Q ss_pred CcceEeEeeeeCCCceeeCceeEE
Q 034810 29 HAAVQINIGHVDADGIYTGQFSTF 52 (82)
Q Consensus 29 HaSVQInv~~vd~~G~~tg~~~t~ 52 (82)
..| +|.|..||.+|.++|.+.|.
T Consensus 15 lGS-~mtI~~v~~~G~itG~Y~Ta 37 (126)
T 2c1s_A 15 LGS-NMTISALDVAGTFSGSYQTA 37 (126)
T ss_dssp TSC-EEEECCCCTTSEEEEEEECS
T ss_pred CCC-EEEEEEeCCCCEEEEEEECC
Confidence 344 68888899999999988763
No 6
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=31.57 E-value=10 Score=23.00 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=19.1
Q ss_pred cccCcCCcccCCCCcceEeEeeee
Q 034810 16 KCSATNRLITSKDHAAVQINIGHV 39 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv~~v 39 (82)
.|.++|......--.+++++|++-
T Consensus 191 tC~a~N~~g~~~~~~t~~v~V~~~ 214 (218)
T 4frw_A 191 TCVVSHPGLLQDQRITHILHVSHH 214 (218)
T ss_dssp EEEEECTTCSSCEEEEEECCEECC
T ss_pred EEEEEeCCCCeEEEEEEEEEECcC
Confidence 599999887777777888888763
No 7
>2jgs_A Circular permutant of avidin; biotin-binding protein, glycoprotein; HET: BTN; 1.9A {Gallus gallus}
Probab=29.46 E-value=22 Score=24.52 Aligned_cols=35 Identities=37% Similarity=0.702 Sum_probs=22.8
Q ss_pred eccccCcCCcccCCCCcceEeEeeeeCCCceeeCceeE
Q 034810 14 PRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFST 51 (82)
Q Consensus 14 PRKCS~TnriI~akDHaSVQInv~~vd~~G~~tg~~~t 51 (82)
-|||+.+.+-.. |-.| +|.|..||.+|.|+|.+.|
T Consensus 93 ~~~c~l~G~W~n--~lgs-~m~i~~v~~~G~f~G~y~t 127 (130)
T 2jgs_A 93 ARKCSLTGKWTN--DLGS-NMTIGAVNSRGEFTGTYIT 127 (130)
T ss_dssp ---CCSCEEEEC--TTCC-EEEECCCCSSCEEEEEEEC
T ss_pred ccccccceEEeh--hcCC-eEEEEEeccCcEEEEEEEc
Confidence 368876555433 2233 6899999999999998765
No 8
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=27.36 E-value=1e+02 Score=19.81 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=20.0
Q ss_pred ccCceeeeeeeccccCcCCcccCCCCc--ceEeEeeeeCCCce
Q 034810 4 EEGQNMDLYIPRKCSATNRLITSKDHA--AVQINIGHVDADGI 44 (82)
Q Consensus 4 d~g~~VDlYiPRKCS~TnriI~akDHa--SVQInv~~vd~~G~ 44 (82)
|-+..--|+||++|.... ....|-. .--+.|.-.|++|.
T Consensus 22 Dv~~~~rL~iPk~~a~~~--lP~~~~~~~~~~~~l~l~D~~Gk 62 (130)
T 1wid_A 22 DVGKLNRLVIPKHHAEKH--FPLPSSNVSVKGVLLNFEDVNGK 62 (130)
T ss_dssp TTSSSCCEEECHHHHTTT--SCCCSSCCSSCCEEEEEEETTTE
T ss_pred HcCCCCEEEeCHHHHHhh--CCccccccCCCcEEEEEEeCCCC
Confidence 344444689999986543 3333321 11133444566674
No 9
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=25.90 E-value=14 Score=22.57 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=15.8
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
.|.++|.-....-.++|+++|
T Consensus 197 tC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 197 TCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp EEEEECTTCSSCEEEEEECCB
T ss_pred EEEEEcCCCCeEEEEEEEEEE
Confidence 599999877766667777765
No 10
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=24.76 E-value=26 Score=23.86 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.9
Q ss_pred eeeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhcccchh
Q 034810 37 GHVDADGIYTGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEVR 80 (82)
Q Consensus 37 ~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~ 80 (82)
.-||++|+|+.+ - +.|--+. +++..+....++.|++..
T Consensus 142 ~~id~~G~~~~~-~---~~Gl~v~--~A~~~Ii~~L~~~g~l~~ 179 (186)
T 1wny_A 142 KTVDEEGKLLVE-P---FKGLYFR--EANRAILRDLRGRGLLFK 179 (186)
T ss_dssp CCBCTTSBBCST-T---CTTCBHH--HHHHHHHHHHHHTTCEEE
T ss_pred eeeCCCccCccC-C---CCCcCHH--HHHHHHHHHHHHCCCeec
Confidence 346888999876 2 6775444 678888888899887644
No 11
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=24.50 E-value=1.1e+02 Score=22.26 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=35.4
Q ss_pred cCCccc---CCCCcceEeE-----eeeeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhc
Q 034810 20 TNRLIT---SKDHAAVQIN-----IGHVDADGIYTGQFSTFALCGFVRAQGDGDSALDRLWQKK 75 (82)
Q Consensus 20 TnriI~---akDHaSVQIn-----v~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~ 75 (82)
||..+. -.||.-+-|+ |--+|++ ++..||.++ .+...|.+.+...||---+
T Consensus 164 SngtvQVNF~~DhtKlILs~~~~~vTyid~~----~~~~Ty~L~-~l~~~g~~~~l~~RL~Ya~ 222 (232)
T 3p34_A 164 SNGSVQINFFQDHTKLILCPLMAAVTYIDEK----RDFRTYRLS-LLEEYGCCKELASRLRYAR 222 (232)
T ss_dssp TTSCEEEEETTTCCEEEEETTTTEEEEECTT----SCEEEEEHH-HHHHHCCCHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCcEEEEeCCCcEEEEEcCC----CCEEEEEhH-HHHhcCCCHHHHHHHHHHH
Confidence 454443 3577776665 5566665 567899996 8888899999888885433
No 12
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=21.86 E-value=19 Score=22.37 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=12.2
Q ss_pred cccCcCCcccCCCCcceEeEe
Q 034810 16 KCSATNRLITSKDHAAVQINI 36 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv 36 (82)
.|.++|..-.....++|+++|
T Consensus 193 ~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 193 TCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp EEEEECC----CCEEEEECCC
T ss_pred EEEEEeCCCCcceEEEEEEEe
Confidence 488888765566667777765
No 13
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.56 E-value=17 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=24.4
Q ss_pred ccCCCCcceEeEeeeeCC-CceeeCceeEEEEehh
Q 034810 24 ITSKDHAAVQINIGHVDA-DGIYTGQFSTFALCGF 57 (82)
Q Consensus 24 I~akDHaSVQInv~~vd~-~G~~tg~~~t~ai~G~ 57 (82)
|..+|....+|-+..+|. +|.|.-+++++.-||.
T Consensus 63 I~~~~~~~~~i~~~v~Dn~DGsy~v~Yr~~~~~g~ 97 (124)
T 2di7_A 63 VSAPEEQFTRVGVQVLDRKDGSFIVRYRMYASYKN 97 (124)
T ss_dssp EECSSCCCCCCCCEEECCSSSCCEEECCCCSCCSC
T ss_pred EecCCCCceEeeeEEEECCCCeEEEEEECCCCCCC
Confidence 444566667777888898 8998888876655554
No 14
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=20.45 E-value=57 Score=21.30 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=13.2
Q ss_pred EeEeeeeCCCceeeCceeEEEEehh
Q 034810 33 QINIGHVDADGIYTGQFSTFALCGF 57 (82)
Q Consensus 33 QInv~~vd~~G~~tg~~~t~ai~G~ 57 (82)
|+.|..++ || .+|.||+|.|.
T Consensus 18 ~V~IvNvn-NG---~RfeTYvI~Ge 38 (97)
T 1uhe_A 18 KVEIVDVN-NG---ERFSTYVILGK 38 (97)
T ss_dssp EEEEEETT-TC---CEEEEECEEEC
T ss_pred EEEEEECC-CC---ceEEEEEEeec
Confidence 34444444 55 35789999875
Done!