Query 034810
Match_columns 82
No_of_seqs 102 out of 174
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 10:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s1da_ b.67.3.1 (A:) Soluble 82.7 0.17 1.3E-05 37.6 1.0 32 11-42 212-257 (317)
2 d1f97a2 b.1.1.4 (A:129-238) Ju 78.4 0.3 2.2E-05 27.8 0.8 28 16-43 83-110 (110)
3 d2f69a1 b.76.2.1 (A:116-193) H 59.9 1.8 0.00013 26.2 1.5 24 27-53 9-32 (78)
4 d2gexa1 d.17.4.9 (A:2-139) Nog 44.2 14 0.00099 21.2 3.7 32 36-67 106-137 (138)
5 d1udza_ b.51.1.1 (A:) Isoleucy 36.3 3.9 0.00028 26.3 0.2 39 37-81 139-177 (179)
6 d3cdda2 b.106.1.1 (A:2-180) Ba 36.3 5.9 0.00043 24.2 1.1 23 57-79 144-167 (179)
7 d2gysa1 b.1.2.1 (A:1-103) Comm 34.4 4.7 0.00035 25.3 0.4 23 11-33 66-90 (103)
8 d1wkaa1 b.51.1.1 (A:195-337) V 31.6 3.6 0.00026 26.1 -0.6 42 38-81 99-140 (143)
9 d1vqou1 g.39.1.6 (U:4-56) Ribo 28.8 9.9 0.00072 20.9 1.1 12 15-26 1-12 (53)
10 d2p0sa1 c.94.1.3 (A:48-183) Un 25.8 9.2 0.00067 23.8 0.7 16 35-50 4-19 (136)
11 d1fdra1 b.43.4.2 (A:2-100) Fer 25.7 24 0.0018 19.9 2.6 42 4-46 31-75 (99)
12 d3d37a1 b.106.1.1 (A:6-178) Ba 23.6 20 0.0015 21.8 2.0 25 55-79 136-161 (173)
13 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 22.5 13 0.00092 23.5 0.9 17 1-17 100-116 (132)
14 d1nbqa2 b.1.1.4 (A:130-233) Ju 21.1 8.7 0.00063 20.8 -0.2 22 16-37 82-103 (104)
15 d1o9ya_ b.139.1.1 (A:) Structu 20.3 13 0.00098 20.1 0.6 32 4-35 37-68 (71)
No 1
>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.71 E-value=0.17 Score=37.58 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=24.4
Q ss_pred eeeecccc------------CcCCcccC-CCCcceE-eEeeeeCCC
Q 034810 11 LYIPRKCS------------ATNRLITS-KDHAAVQ-INIGHVDAD 42 (82)
Q Consensus 11 lYiPRKCS------------~TnriI~a-kDHaSVQ-Inv~~vd~~ 42 (82)
..+||||| .+|-||.+ .|...++ |.|+.++|+
T Consensus 212 ~FlPRr~S~e~Y~e~~DE~~G~N~li~~~e~F~~i~vi~ig~~~p~ 257 (317)
T d1s1da_ 212 FFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPT 257 (317)
T ss_dssp EECCSEEESSCCCHHHHTTCBCCEEEEECTTSSCEEEEECSCCCTT
T ss_pred EEechhhccccCCchhhhhcCCcEEEEecCCCceeEEEEcCCcCCC
Confidence 36799999 68999996 5667777 557777774
No 2
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.38 E-value=0.3 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=22.7
Q ss_pred cccCcCCcccCCCCcceEeEeeeeCCCc
Q 034810 16 KCSATNRLITSKDHAAVQINIGHVDADG 43 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv~~vd~~G 43 (82)
.|.++|..=.+.-.++|+|+|.+||-.|
T Consensus 83 ~C~a~N~~G~~~~s~~v~l~V~~l~~~g 110 (110)
T d1f97a2 83 YCQAQNGYGTAMRSEAAHMDAVELNVGG 110 (110)
T ss_dssp EEEEECSSSCCEECCCEEEEEESSCSCC
T ss_pred EEEEEECCCcEEEEEEEEEEEEecCCCC
Confidence 6999998866665678999999987655
No 3
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.93 E-value=1.8 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred CCCcceEeEeeeeCCCceeeCceeEEE
Q 034810 27 KDHAAVQINIGHVDADGIYTGQFSTFA 53 (82)
Q Consensus 27 kDHaSVQInv~~vd~~G~~tg~~~t~a 53 (82)
-|-+|+ |++||++|.|||+...|.
T Consensus 9 pdGGsl---vG~vne~gEmtGd~IAYv 32 (78)
T d2f69a1 9 PDGGSL---VGEVNEDGEMTGEKIAYV 32 (78)
T ss_dssp TTSCEE---EECCCTTSCCCEEEEEEE
T ss_pred CCCCEE---EeeecCCCccccceEEEE
Confidence 355554 799999999999998885
No 4
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}
Probab=44.24 E-value=14 Score=21.16 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=26.5
Q ss_pred eeeeCCCceeeCceeEEEEehhhhhcccchHH
Q 034810 36 IGHVDADGIYTGQFSTFALCGFVRAQGDGDSA 67 (82)
Q Consensus 36 v~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~ 67 (82)
+-.++++|++......|...+.++++|..=++
T Consensus 106 ~~~~~d~GkI~e~~~~~D~~~~~~QlG~~P~~ 137 (138)
T d2gexa1 106 ELRFSEAGKVVEHWDVFNFSPLFRDLGVVPDG 137 (138)
T ss_dssp EEEECTTSCEEEEEEEEECHHHHHHSTTCHHH
T ss_pred EEEEccCCEEEEEEEEECHHHHHHHcCCCCCC
Confidence 45667789999999999999999999876554
No 5
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=36.34 E-value=3.9 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.6
Q ss_pred eeeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhcccchhc
Q 034810 37 GHVDADGIYTGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEVRQ 81 (82)
Q Consensus 37 ~~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~~ 81 (82)
..||++|+|+.. .+.|--. .+++..+-...+++|+|.++
T Consensus 139 ~~Vd~~G~~~~~----~~~Gl~v--~dA~~~Ii~~L~~~g~L~~~ 177 (179)
T d1udza_ 139 KTVDEEGKLLVE----PFKGLYF--REANRAILRDLRGRGFLFKE 177 (179)
T ss_dssp CCBCTTSBBCST----TCTTCBH--HHHHHHHHHHHHHHTCEEEE
T ss_pred ccccCcceeccc----ccCCCCH--HHhHHHHHHHHHHCCCEEee
Confidence 458999999754 2455433 57899999898999988654
No 6
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella oneidensis [TaxId: 70863]}
Probab=36.32 E-value=5.9 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.2
Q ss_pred hhhhcccch-HHHHHHHHhcccch
Q 034810 57 FVRAQGDGD-SALDRLWQKKKAEV 79 (82)
Q Consensus 57 ~iR~~GesD-~~l~rL~~~~~~~~ 79 (82)
++-+.|||| +.|.|||++.|++.
T Consensus 144 ~~~q~~Esd~~fl~Rla~~~G~~~ 167 (179)
T d3cdda2 144 IQIEQGETPHELLARLAKQRGVLL 167 (179)
T ss_dssp EECCTTCCHHHHHHHHHHTTTCEE
T ss_pred eEeecCCcHHHHHHHHHHHCCCEE
Confidence 445689999 88999999999864
No 7
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.40 E-value=4.7 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.519 Sum_probs=17.9
Q ss_pred eeeeccc--cCcCCcccCCCCcceE
Q 034810 11 LYIPRKC--SATNRLITSKDHAAVQ 33 (82)
Q Consensus 11 lYiPRKC--S~TnriI~akDHaSVQ 33 (82)
-.|||+| -.+.-.|+.+|.=|.|
T Consensus 66 ~CvPrrCVipy~~F~~~d~DyfSF~ 90 (103)
T d2gysa1 66 RCVPRRCVIPCQSFVVTDVDYFSFQ 90 (103)
T ss_dssp SEEEEEEEEECSCCCTTCEEEEEEE
T ss_pred CCcCceEEeechheeeeccceEeec
Confidence 3789999 5677778888887765
No 8
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=31.56 E-value=3.6 Score=26.06 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=28.3
Q ss_pred eeCCCceeeCceeEEEEehhhhhcccchHHHHHHHHhcccchhc
Q 034810 38 HVDADGIYTGQFSTFALCGFVRAQGDGDSALDRLWQKKKAEVRQ 81 (82)
Q Consensus 38 ~vd~~G~~tg~~~t~ai~G~iR~~GesD~~l~rL~~~~~~~~~~ 81 (82)
-+|++|+|+.+...-.+.|--+. ++...+-..++++|++.+.
T Consensus 99 ~i~~~G~~~~~~~~~~~~Gl~~~--~A~~~Ii~~L~~~gll~k~ 140 (143)
T d1wkaa1 99 VINLEGRMEGERVPEALRGLDRF--EARRKAVELFREAGHLVKE 140 (143)
T ss_dssp SBCTTSBBCSTTSCGGGTTSBHH--HHHHHHHHHHHHHTCEEEE
T ss_pred cccccceEeeecchHhhCCCcHH--HHHHHHHHHHHhCCCEEee
Confidence 46889999876432224454443 6778888888999988654
No 9
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=28.81 E-value=9.9 Score=20.95 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.2
Q ss_pred ccccCcCCcccC
Q 034810 15 RKCSATNRLITS 26 (82)
Q Consensus 15 RKCS~TnriI~a 26 (82)
|+||++...|.+
T Consensus 1 r~CsF~g~~I~P 12 (53)
T d1vqou1 1 RECDYCGTDIEP 12 (53)
T ss_dssp CBCTTTCCBCCT
T ss_pred CcccccCCeecC
Confidence 689999998875
No 10
>d2p0sa1 c.94.1.3 (A:48-183) Uncharacterized protein PG0945 {Porphyromonas gingivalis [TaxId: 837]}
Probab=25.81 E-value=9.2 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=12.8
Q ss_pred EeeeeCCCceeeCcee
Q 034810 35 NIGHVDADGIYTGQFS 50 (82)
Q Consensus 35 nv~~vd~~G~~tg~~~ 50 (82)
+|+.||++|.|...|+
T Consensus 4 ~IaVvDesG~f~~~fk 19 (136)
T d2p0sa1 4 TIAIADRTGEYEQLFK 19 (136)
T ss_dssp EEEEEETTSSSGGGGT
T ss_pred EEEEEcCCCcchhhcc
Confidence 5899999999876553
No 11
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.70 E-value=24 Score=19.91 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=22.0
Q ss_pred ccCceeeeeeeccccCcCC---cccCCCCcceEeEeeeeCCCceee
Q 034810 4 EEGQNMDLYIPRKCSATNR---LITSKDHAAVQINIGHVDADGIYT 46 (82)
Q Consensus 4 d~g~~VDlYiPRKCS~Tnr---iI~akDHaSVQInv~~vd~~G~~t 46 (82)
..|++|.|.+|-.=...-| |.++.+.....+.|-.++ +|.++
T Consensus 31 ~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~~~~~~~vk~~~-~G~~S 75 (99)
T d1fdra1 31 TAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVP-DGKLS 75 (99)
T ss_dssp CTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCT-TCSSH
T ss_pred CCCcEEEeccCCCCCcEEEEEccCCCCCCceeEEEEEEec-CcHHH
Confidence 4689999988732111111 233444566777776653 34443
No 12
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=23.59 E-value=20 Score=21.79 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=19.2
Q ss_pred ehhhhhcccch-HHHHHHHHhcccch
Q 034810 55 CGFVRAQGDGD-SALDRLWQKKKAEV 79 (82)
Q Consensus 55 ~G~iR~~GesD-~~l~rL~~~~~~~~ 79 (82)
--+.-+.||+| +.|.|||++.|++.
T Consensus 136 ~~~~vQ~~ETd~~fl~Rla~~~G~~~ 161 (173)
T d3d37a1 136 GKIDIEPGETVWQALTHIANSVGLHP 161 (173)
T ss_dssp CCCCCCTTCBHHHHHHHHHHHTTCEE
T ss_pred ceEEecCCCCHHHHHHHHHHHCCCEE
Confidence 33445779999 56899999999875
No 13
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=22.52 E-value=13 Score=23.51 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.5
Q ss_pred CccccCceeeeeeeccc
Q 034810 1 MQNEEGQNMDLYIPRKC 17 (82)
Q Consensus 1 MqNd~g~~VDlYiPRKC 17 (82)
|+|++|+..+.+||+==
T Consensus 100 m~~~~g~~F~v~Ip~F~ 116 (132)
T d1tzaa_ 100 MVSESGEHFNAIIKPFR 116 (132)
T ss_dssp EEETTCCEEEEEEEEEE
T ss_pred EEECCCCEEEEECCCEE
Confidence 78899999999999743
No 14
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.14 E-value=8.7 Score=20.83 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=14.3
Q ss_pred cccCcCCcccCCCCcceEeEee
Q 034810 16 KCSATNRLITSKDHAAVQINIG 37 (82)
Q Consensus 16 KCS~TnriI~akDHaSVQInv~ 37 (82)
+|.++|..=.+.-.++|.+.+.
T Consensus 82 ~C~a~N~~G~~~~s~~v~v~v~ 103 (104)
T d1nbqa2 82 SCEARNGYGTPMTSNAVRMEAV 103 (104)
T ss_dssp EEEEECSSSCCEECCCBCCEEE
T ss_pred EEEEEECCCceEEEEEEEEEEE
Confidence 5888888655545566666653
No 15
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]}
Probab=20.27 E-value=13 Score=20.13 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=26.2
Q ss_pred ccCceeeeeeeccccCcCCcccCCCCcceEeE
Q 034810 4 EEGQNMDLYIPRKCSATNRLITSKDHAAVQIN 35 (82)
Q Consensus 4 d~g~~VDlYiPRKCS~TnriI~akDHaSVQIn 35 (82)
...+.|+||+=-+.-+..++..-+++-.|||+
T Consensus 37 ~~~~~V~l~v~g~~i~~G~l~~~~~~~av~It 68 (71)
T d1o9ya_ 37 ISPGHATLCHGEQVVAEGELVDVEGRLGLQIT 68 (71)
T ss_dssp SCTTEEEEEETTEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEEEEECCEEEEEEE
Confidence 34567889988888888888888888888885
Done!