Query 034813
Match_columns 82
No_of_seqs 103 out of 205
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3240 Phosphatidylinositol s 99.9 1.9E-24 4.2E-29 155.0 7.5 74 1-82 144-217 (218)
2 PF13939 TisB_toxin: Toxin Tis 42.4 45 0.00097 16.9 2.7 19 51-69 7-25 (28)
3 PF13080 DUF3926: Protein of u 40.4 22 0.00048 19.9 1.5 15 54-68 14-28 (44)
4 PF10655 DUF2482: Hypothetical 39.0 25 0.00055 22.9 1.8 26 52-77 73-98 (100)
5 PRK14754 toxic peptide TisB; P 30.2 84 0.0018 15.9 3.5 19 51-69 7-25 (29)
6 PRK13197 pyrrolidone-carboxyla 23.7 62 0.0013 23.2 1.9 14 9-22 143-156 (215)
7 PF06001 DUF902: Domain of Unk 21.5 32 0.00069 19.2 0.1 19 3-22 6-24 (42)
8 PF14992 TMCO5: TMCO5 family 20.6 1.1E+02 0.0025 23.3 2.9 37 14-52 234-270 (280)
9 KOG4812 Golgi-associated prote 20.5 2.5E+02 0.0054 21.3 4.6 37 39-75 222-258 (262)
10 COG0310 CbiM ABC-type Co2+ tra 20.4 63 0.0014 23.4 1.4 33 48-81 8-40 (204)
11 PF12156 ATPase-cat_bd: Putati 20.4 76 0.0016 19.6 1.6 17 4-20 26-42 (88)
12 PF10624 TraS: Plasmid conjuga 20.2 2.5E+02 0.0055 19.6 4.3 17 12-28 13-29 (164)
No 1
>KOG3240 consensus Phosphatidylinositol synthase [Lipid transport and metabolism]
Probab=99.91 E-value=1.9e-24 Score=154.98 Aligned_cols=74 Identities=36% Similarity=0.456 Sum_probs=68.0
Q ss_pred CchheehhhhHHHHHHHHHHhhhccchhhHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Q 034813 1 MFMGYSCVACELLYLIIFLIAETQSESLVDVVVGAVRQGSPLSFLVALSLFGWAIKQTINVIKMKTAADVCVLYDIEKKQ 80 (82)
Q Consensus 1 ~~l~~~C~gNElFyi~LYll~f~~~~~~~~~~~~~~~~~~~~~~l~~vs~P~~~~Kq~INvvQl~~As~~La~~D~~~r~ 80 (82)
++||+||++||+||+.||+.+|+++|.+. +.+++++...+|+|+..+||.|||||+++|++.++..|++||+
T Consensus 144 ~vL~~~C~~nE~Fyi~LYl~~f~~~pll~--------~~~~~s~~~~lsfp~a~~KqlInVi~l~tAa~~~~~~Dv~~r~ 215 (218)
T KOG3240|consen 144 DVLFTICAGNELFYILLYLLAFSQGPLLG--------NVVVFSITQILSFPLALLKQLINVIQLITAADVCVAHDVEERQ 215 (218)
T ss_pred ceehhhhhhHHHHHHHHHHHHcCCCCcee--------eeeHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 47899999999999999999999988653 4677788888999999999999999999999999999999998
Q ss_pred CC
Q 034813 81 RP 82 (82)
Q Consensus 81 ~~ 82 (82)
||
T Consensus 216 ~~ 217 (218)
T KOG3240|consen 216 EK 217 (218)
T ss_pred cC
Confidence 75
No 2
>PF13939 TisB_toxin: Toxin TisB, type I toxin-antitoxin system
Probab=42.42 E-value=45 Score=16.88 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034813 51 FGWAIKQTINVIKMKTAAD 69 (82)
Q Consensus 51 P~~~~Kq~INvvQl~~As~ 69 (82)
-+-.+|-++.+.|+.+|-.
T Consensus 7 ~ililkl~va~lqlldavl 25 (28)
T PF13939_consen 7 IILILKLIVAVLQLLDAVL 25 (28)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567899999999998853
No 3
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=40.39 E-value=22 Score=19.93 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 034813 54 AIKQTINVIKMKTAA 68 (82)
Q Consensus 54 ~~Kq~INvvQl~~As 68 (82)
-.||.+|+.|=--+|
T Consensus 14 sAkqmlnILQEELss 28 (44)
T PF13080_consen 14 SAKQMLNILQEELSS 28 (44)
T ss_pred HHHHHHHHHHHHHHh
Confidence 469999999954443
No 4
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=39.00 E-value=25 Score=22.92 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 034813 52 GWAIKQTINVIKMKTAADVCVLYDIE 77 (82)
Q Consensus 52 ~~~~Kq~INvvQl~~As~~La~~D~~ 77 (82)
---.|-++|++|+.+.-+.|+.-|-+
T Consensus 73 ~~~f~dI~nvi~~~Klqk~l~idd~k 98 (100)
T PF10655_consen 73 ADNFKDIVNVIQMRKLQKFLGIDDNK 98 (100)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccCcC
Confidence 44579999999999998888765543
No 5
>PRK14754 toxic peptide TisB; Provisional
Probab=30.19 E-value=84 Score=15.95 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034813 51 FGWAIKQTINVIKMKTAAD 69 (82)
Q Consensus 51 P~~~~Kq~INvvQl~~As~ 69 (82)
-+-.+|-++.+.|+.+|-.
T Consensus 7 ~ililkliva~lqlldavl 25 (29)
T PRK14754 7 AILILKLIVAALQLLDAVL 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667899999999998853
No 6
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.74 E-value=62 Score=23.18 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHhh
Q 034813 9 ACELLYLIIFLIAE 22 (82)
Q Consensus 9 gNElFyi~LYll~f 22 (82)
+|+++|-+||..+-
T Consensus 143 CN~i~Y~sl~~~~~ 156 (215)
T PRK13197 143 CNHVMYGLLHLLDK 156 (215)
T ss_pred ehHHHHHHHHHHHh
Confidence 49999999998753
No 7
>PF06001 DUF902: Domain of Unknown Function (DUF902); InterPro: IPR010303 This domain of unknown function is found in several transcriptional co-activators including the CREB-binding protein, 2.3.1.48 from EC, which is an acetyltransferase that acetylates histones, giving a specific tag for transcriptional activation. CREB-binding protein also acetylates non-histone proteins.; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=21.50 E-value=32 Score=19.17 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=0.7
Q ss_pred hheehhhhHHHHHHHHHHhh
Q 034813 3 MGYSCVACELLYLIIFLIAE 22 (82)
Q Consensus 3 l~~~C~gNElFyi~LYll~f 22 (82)
|++|| |-|+.|--.=|.-+
T Consensus 6 lGyCC-grk~~f~p~~L~C~ 24 (42)
T PF06001_consen 6 LGYCC-GRKLVFTPQVLYCY 24 (42)
T ss_dssp H-------------------
T ss_pred cCccc-CCceEecCceEEec
Confidence 68899 88887765444443
No 8
>PF14992 TMCO5: TMCO5 family
Probab=20.56 E-value=1.1e+02 Score=23.26 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHHhhhccchhhHhhhhccccchHHHHHHHHHHHH
Q 034813 14 YLIIFLIAETQSESLVDVVVGAVRQGSPLSFLVALSLFG 52 (82)
Q Consensus 14 yi~LYll~f~~~~~~~~~~~~~~~~~~~~~~l~~vs~P~ 52 (82)
|+..| ++|..+..+.+++|..+...+++++ --+-+|.
T Consensus 234 y~~f~-~~fInpdll~~~LP~~L~R~tlw~L-R~~l~Pf 270 (280)
T PF14992_consen 234 YLLFY-IQFINPDLLEDVLPKMLSRRTLWRL-REFLFPF 270 (280)
T ss_pred HHHHH-HhhcCcHHHHHHhHHhcchhHHHHH-HHHHhhh
Confidence 66666 5666666677777776666666443 3333453
No 9
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.50 E-value=2.5e+02 Score=21.32 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034813 39 GSPLSFLVALSLFGWAIKQTINVIKMKTAADVCVLYD 75 (82)
Q Consensus 39 ~~~~~~l~~vs~P~~~~Kq~INvvQl~~As~~La~~D 75 (82)
-.|.|++..+-.-.-.+|-+||-||..+-.+.+..-|
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~YikVrrm~~~~s~~~ 258 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIKVRRMEEKYSNQS 258 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHhccc
Confidence 3444554444445567899999999999888877655
No 10
>COG0310 CbiM ABC-type Co2+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=20.44 E-value=63 Score=23.45 Aligned_cols=33 Identities=6% Similarity=-0.137 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcC
Q 034813 48 LSLFGWAIKQTINVIKMKTAADVCVLYDIEKKQR 81 (82)
Q Consensus 48 vs~P~~~~Kq~INvvQl~~As~~La~~D~~~r~~ 81 (82)
+..|.|+.++++.+.=..-+..++-+ +.+||++
T Consensus 8 lp~~~~~~~~~va~~~~~~~~~r~~~-~~~~r~~ 40 (204)
T COG0310 8 LPPPWCAVWYAVALPAIAYGLRRLER-YEKERKI 40 (204)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhcccc-ccccccc
Confidence 56788888999998888888888877 6666654
No 11
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=20.42 E-value=76 Score=19.60 Aligned_cols=17 Identities=24% Similarity=0.684 Sum_probs=14.3
Q ss_pred heehhhhHHHHHHHHHH
Q 034813 4 GYSCVACELLYLIIFLI 20 (82)
Q Consensus 4 ~~~C~gNElFyi~LYll 20 (82)
-|||.|++.-|-+|.-.
T Consensus 26 ~FCC~GC~~V~~~i~~~ 42 (88)
T PF12156_consen 26 PFCCPGCQAVYQLIHEN 42 (88)
T ss_pred ccccHHHHHHHHHHHHc
Confidence 48999999999988743
No 12
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=20.17 E-value=2.5e+02 Score=19.61 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhccchh
Q 034813 12 LLYLIIFLIAETQSESL 28 (82)
Q Consensus 12 lFyi~LYll~f~~~~~~ 28 (82)
+=|++.||..|-.++++
T Consensus 13 iQfIaCyLAgW~~aET~ 29 (164)
T PF10624_consen 13 IQFIACYLAGWGVAETI 29 (164)
T ss_pred HHHHHHHHhccCccchH
Confidence 34677777777555443
Done!