Query 034813
Match_columns 82
No_of_seqs 103 out of 205
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gxh_A Pyrrolidone-carboxylate 20.0 56 0.0019 22.4 2.1 15 9-23 144-158 (216)
2 1z0p_A Hypothetical protein SP 19.9 51 0.0017 19.9 1.6 23 59-81 19-42 (84)
3 3arc_I Photosystem II reaction 17.5 88 0.003 16.3 2.0 15 11-25 12-26 (38)
4 1hgv_A PH75 inovirus major coa 16.8 52 0.0018 17.5 1.0 18 53-70 7-24 (46)
5 1x10_A Pyrrolidone-carboxylate 14.3 95 0.0032 21.1 2.1 14 9-22 142-155 (208)
6 1iu8_A Pyrrolidone-carboxylate 13.4 1E+02 0.0036 20.8 2.1 14 9-22 139-152 (206)
7 1a2z_A Pyrrolidone carboxyl pe 13.4 1E+02 0.0035 21.1 2.1 14 9-22 143-156 (220)
8 3lac_A Pyrrolidone-carboxylate 11.6 1.3E+02 0.0043 20.6 2.1 13 9-21 143-155 (215)
9 2ebj_A Pyrrolidone carboxyl pe 11.4 1.2E+02 0.004 20.4 1.8 13 9-21 139-151 (192)
10 4hps_A Pyrrolidone-carboxylate 11.3 1.3E+02 0.0044 20.8 2.1 14 9-22 165-178 (228)
No 1
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=20.03 E-value=56 Score=22.41 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHhhh
Q 034813 9 ACELLYLIIFLIAET 23 (82)
Q Consensus 9 gNElFyi~LYll~f~ 23 (82)
+|+++|-+||++.-.
T Consensus 144 CN~i~Y~sL~~~~~~ 158 (216)
T 4gxh_A 144 CNHVMYGLLHYLAQN 158 (216)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 599999999998643
No 2
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=19.93 E-value=51 Score=19.88 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHH-HHHHHHHHHhhHHhhcC
Q 034813 59 INVIKM-KTAADVCVLYDIEKKQR 81 (82)
Q Consensus 59 INvvQl-~~As~~La~~D~~~r~~ 81 (82)
|-|=|| .++|+.+++-|-+||.+
T Consensus 19 i~ine~Am~~s~kv~eED~derAk 42 (84)
T 1z0p_A 19 IQVNQLAMATSQEVAQEDGDERAK 42 (84)
T ss_dssp HHHHHHHHHHHHHHC----CHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHH
Confidence 334444 46788999999999864
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=17.53 E-value=88 Score=16.27 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhcc
Q 034813 11 ELLYLIIFLIAETQS 25 (82)
Q Consensus 11 ElFyi~LYll~f~~~ 25 (82)
=.||+.|+..+|-+.
T Consensus 12 V~ffvsLFiFGfLsn 26 (38)
T 3arc_I 12 VTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccCC
Confidence 368999999999655
No 4
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=16.82 E-value=52 Score=17.55 Aligned_cols=18 Identities=33% Similarity=0.215 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034813 53 WAIKQTINVIKMKTAADV 70 (82)
Q Consensus 53 ~~~Kq~INvvQl~~As~~ 70 (82)
-+.-|++|-||+..|+-.
T Consensus 7 eia~~v~~yi~~iaaagv 24 (46)
T 1hgv_A 7 EVASQVTNYIQAIAAAGV 24 (46)
T ss_dssp HHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 355688888898888753
No 5
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=14.31 E-value=95 Score=21.05 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHhh
Q 034813 9 ACELLYLIIFLIAE 22 (82)
Q Consensus 9 gNElFyi~LYll~f 22 (82)
+|+++|-+||...-
T Consensus 142 CN~i~Y~sL~~~~~ 155 (208)
T 1x10_A 142 SNYVMYLSLHHSAT 155 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 59999999999863
No 6
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=13.36 E-value=1e+02 Score=20.83 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHhh
Q 034813 9 ACELLYLIIFLIAE 22 (82)
Q Consensus 9 gNElFyi~LYll~f 22 (82)
+|+++|-+||...-
T Consensus 139 CN~i~Y~sL~~~~~ 152 (206)
T 1iu8_A 139 CNFAMYLTLHTSAT 152 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 59999999999863
No 7
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=13.35 E-value=1e+02 Score=21.14 Aligned_cols=14 Identities=0% Similarity=0.069 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHhh
Q 034813 9 ACELLYLIIFLIAE 22 (82)
Q Consensus 9 gNElFyi~LYll~f 22 (82)
+|+++|-+||...-
T Consensus 143 CN~i~Y~sL~~~~~ 156 (220)
T 1a2z_A 143 CNYVMFKTLHFSKI 156 (220)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 59999999999864
No 8
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=11.61 E-value=1.3e+02 Score=20.59 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHh
Q 034813 9 ACELLYLIIFLIA 21 (82)
Q Consensus 9 gNElFyi~LYll~ 21 (82)
+|.++|-+||..+
T Consensus 143 CN~i~Y~sL~~~~ 155 (215)
T 3lac_A 143 CNHLFYGLMHELE 155 (215)
T ss_dssp HHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHH
Confidence 4999999999985
No 9
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=11.44 E-value=1.2e+02 Score=20.37 Aligned_cols=13 Identities=15% Similarity=0.513 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHh
Q 034813 9 ACELLYLIIFLIA 21 (82)
Q Consensus 9 gNElFyi~LYll~ 21 (82)
+|+++|-+||+..
T Consensus 139 CN~i~Y~sL~~~~ 151 (192)
T 2ebj_A 139 CNQAFYLSLYRLP 151 (192)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc
Confidence 5999999999986
No 10
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=11.34 E-value=1.3e+02 Score=20.84 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHhh
Q 034813 9 ACELLYLIIFLIAE 22 (82)
Q Consensus 9 gNElFyi~LYll~f 22 (82)
+|.++|-+||..+-
T Consensus 165 CN~iyY~sL~~~~~ 178 (228)
T 4hps_A 165 CNHVMYGLLHYLAQ 178 (228)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 49999999999873
Done!