Query 034813
Match_columns 82
No_of_seqs 103 out of 205
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 10:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2asxa1 a.274.1.1 (A:278-331) 29.7 9.1 0.00067 19.0 1.0 20 60-79 6-25 (54)
2 d2axti1 f.23.37.1 (I:1-35) Pho 26.5 21 0.0015 17.1 1.9 15 11-25 12-26 (35)
3 d1z0pa1 a.2.18.1 (A:1-77) Hypo 22.1 20 0.0015 19.9 1.6 23 59-81 19-42 (77)
4 d2jdig1 c.49.2.1 (G:1-272) ATP 18.4 37 0.0027 21.4 2.6 16 55-70 16-31 (272)
5 d1a2za_ c.56.4.1 (A:) Pyrrolid 14.2 51 0.0037 20.9 2.4 16 9-24 143-158 (220)
6 d1st6a6 a.24.9.1 (A:647-718) V 13.4 66 0.0048 17.3 2.4 23 52-74 16-39 (72)
7 d2pbea1 a.160.1.5 (A:138-282) 13.3 45 0.0033 20.2 1.8 13 9-21 19-31 (145)
8 d2fm9a1 a.257.1.1 (A:49-263) C 10.3 89 0.0065 20.2 2.6 23 59-81 157-179 (215)
9 d1sxja1 a.80.1.1 (A:548-693) R 8.4 1.5E+02 0.011 17.5 3.1 19 61-79 64-82 (146)
10 d1p9ha_ b.81.3.1 (A:) Adhesin 8.3 43 0.0031 20.5 0.4 11 59-69 178-188 (189)
No 1
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.74 E-value=9.1 Score=18.98 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhHHhh
Q 034813 60 NVIKMKTAADVCVLYDIEKK 79 (82)
Q Consensus 60 NvvQl~~As~~La~~D~~~r 79 (82)
.+-+|.++++.++..|...|
T Consensus 6 Pl~~l~~~~~~ia~Gdl~~~ 25 (54)
T d2asxa1 6 PIIELSNTADKIAEGNLEAE 25 (54)
T ss_dssp HHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHCCCCCCc
Confidence 35688999999999998766
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.47 E-value=21 Score=17.09 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhcc
Q 034813 11 ELLYLIIFLIAETQS 25 (82)
Q Consensus 11 ElFyi~LYll~f~~~ 25 (82)
-.||++|++.+|-++
T Consensus 12 V~fFv~lFiFGFLSn 26 (35)
T d2axti1 12 VTFFVLLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccC
Confidence 368999999999654
No 3
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=22.15 E-value=20 Score=19.89 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHH-HHHHHHHHHhhHHhhcC
Q 034813 59 INVIKM-KTAADVCVLYDIEKKQR 81 (82)
Q Consensus 59 INvvQl-~~As~~La~~D~~~r~~ 81 (82)
|.+-|| .++|+.+++-|-+||.+
T Consensus 19 i~in~mAm~~s~kv~eeD~derA~ 42 (77)
T d1z0pa1 19 IQVNQLAMATSQEVAQEDGDERAK 42 (77)
T ss_dssp HHHHHHHHHHHHHHC----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHH
Confidence 334444 46789999999999864
No 4
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.41 E-value=37 Score=21.41 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034813 55 IKQTINVIKMKTAADV 70 (82)
Q Consensus 55 ~Kq~INvvQl~~As~~ 70 (82)
++|+.|..||+.||+.
T Consensus 16 t~kITkAMkmVAasKl 31 (272)
T d2jdig1 16 IQKITKSMKMVAAAKY 31 (272)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888888888764
No 5
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=14.15 E-value=51 Score=20.91 Aligned_cols=16 Identities=0% Similarity=0.038 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHhhhc
Q 034813 9 ACELLYLIIFLIAETQ 24 (82)
Q Consensus 9 gNElFyi~LYll~f~~ 24 (82)
+||++|-+|+..+-..
T Consensus 143 CN~~~Y~sl~~~~~~~ 158 (220)
T d1a2za_ 143 CNYVMFKTLHFSKIEG 158 (220)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhC
Confidence 4999999999987543
No 6
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.44 E-value=66 Score=17.32 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHh
Q 034813 52 GWAIKQTINVI-KMKTAADVCVLY 74 (82)
Q Consensus 52 ~~~~Kq~INvv-Ql~~As~~La~~ 74 (82)
-.+.||+=++- |+++|++.|+..
T Consensus 16 ~~aa~qle~L~PQVi~AariL~~~ 39 (72)
T d1st6a6 16 QATVKSARELTPQVVSAARILLRN 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHC
Confidence 45677877777 999999988754
No 7
>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=13.28 E-value=45 Score=20.18 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHh
Q 034813 9 ACELLYLIIFLIA 21 (82)
Q Consensus 9 gNElFyi~LYll~ 21 (82)
.||.++++.|+..
T Consensus 19 cNEFww~s~~VaK 31 (145)
T d2pbea1 19 CNEFWMVSTYVVK 31 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999998864
No 8
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.26 E-value=89 Score=20.20 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhHHhhcC
Q 034813 59 INVIKMKTAADVCVLYDIEKKQR 81 (82)
Q Consensus 59 INvvQl~~As~~La~~D~~~r~~ 81 (82)
-|+-||++++-..|--|.+.+.+
T Consensus 157 ~~it~LVD~aA~kA~eaL~~~~q 179 (215)
T d2fm9a1 157 SNLTHLVDKAAAKAVEALDMCHQ 179 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999888887643
No 9
>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.39 E-value=1.5e+02 Score=17.46 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhHHhh
Q 034813 61 VIKMKTAADVCVLYDIEKK 79 (82)
Q Consensus 61 vvQl~~As~~La~~D~~~r 79 (82)
+-.+.+||+.++..|.-+|
T Consensus 64 l~~is~aadsis~gDiid~ 82 (146)
T d1sxja1 64 LEAVAEAANCISLGDIVEK 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 4557899999999999887
No 10
>d1p9ha_ b.81.3.1 (A:) Adhesin YadA, collagen-binding domain {Yersinia enterocolitica [TaxId: 630]}
Probab=8.34 E-value=43 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 034813 59 INVIKMKTAAD 69 (82)
Q Consensus 59 INvvQl~~As~ 69 (82)
||+-||+++.+
T Consensus 178 vn~~QLk~~~~ 188 (189)
T d1p9ha_ 178 VNVAQLKKEIE 188 (189)
T ss_dssp CCHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 56777776654
Done!