BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034814
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 11 VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
+ +AYLDQF DF+ FL+ SEEL GRM+LT + D F + + + I D++ E
Sbjct: 192 IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE 251
Query: 70 GSL 72
G L
Sbjct: 252 GHL 254
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 7 SEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYND-SFHATSPGEPALLVIKD 65
S V +AYLDQF DF+ FL+ SEEL GRM+LT + A + + + I D
Sbjct: 189 SRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARNAIDLLEMAIND 248
Query: 66 MISEGSL 72
++ EG L
Sbjct: 249 LVVEGHL 255
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 11 VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALL------VIK 64
V AY QF+ D + FL+ R++E+ GGRM+LT+L S S E L+ +
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALN 234
Query: 65 DMISEG 70
M+SEG
Sbjct: 235 QMVSEG 240
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 14 AYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALL-------VIKDM 66
AY QF++D + FL+ R+ E+K GG M L L S T G LL D+
Sbjct: 195 AYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDL 254
Query: 67 ISEG 70
+ EG
Sbjct: 255 VREG 258
>pdb|3A1J|A Chain A, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 266
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 47 NDSFHATSPGEPALLVIKDMISEGSLSLS 75
N S H +PG PA+ IKD + +G L+
Sbjct: 235 NLSIHFDAPGRPAIFTIKDSLLDGHFVLA 263
>pdb|3GGR|A Chain A, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 270
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 47 NDSFHATSPGEPALLVIKDMISEGSLSLS 75
N S H +PG PA+ IKD + +G L+
Sbjct: 235 NLSIHFDAPGRPAIFTIKDSLLDGHFVLA 263
>pdb|3G65|A Chain A, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 296
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 47 NDSFHATSPGEPALLVIKDMISEGSLSLS 75
N S H +PG PA+ IKD + +G L+
Sbjct: 235 NLSIHFDAPGRPAIFTIKDSLLDGHFVLA 263
>pdb|1DTO|A Chain A, Crystal Structure Of The Complete Transactivation Domain
Of E2 Protein From The Human Papillomavirus Type 16
Length = 221
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 RAYLDQFKSDFSAFLKFRSEELKCGGRMIL 42
R Y QFK D + K + E+ GG++IL
Sbjct: 185 RTYFVQFKDDAEKYSKNKVWEVHAGGQVIL 214
>pdb|2NNU|A Chain A, Crystal Structure Of The Papillomavirus Dna Tethering
Complex E2:brd4
Length = 205
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 13 RAYLDQFKSDFSAFLKFRSEELKCGGRMIL 42
R Y QFK D + K + E+ GG++IL
Sbjct: 169 RTYFVQFKDDAEKYSKNKVWEVHAGGQVIL 198
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 46 YNDSFHATSPGEPALLVIKDMISEGSLSLSFNTYQ 80
YND F A PG PA+L D I E L LS + Q
Sbjct: 308 YNDMFWAVHPGGPAIL---DQI-EAKLGLSTDKMQ 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,375,762
Number of Sequences: 62578
Number of extensions: 75515
Number of successful extensions: 132
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 12
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)