Query 034816
Match_columns 82
No_of_seqs 116 out of 709
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q4r_A Protein AT3G17210; cent 99.9 1E-24 3.4E-29 134.7 8.2 79 2-81 28-111 (112)
2 1rjj_A Expressed protein; beta 99.9 6.1E-24 2.1E-28 130.9 8.3 79 2-81 20-104 (111)
3 1tr0_A Stable protein 1; plant 99.9 1.9E-23 6.3E-28 128.1 8.3 75 2-77 26-107 (108)
4 2qyc_A Ferredoxin-like protein 99.9 3.2E-23 1.1E-27 126.1 8.0 76 2-80 22-102 (103)
5 3bn7_A Ferredoxin-like protein 99.9 9.9E-23 3.4E-27 127.6 9.4 75 2-77 38-119 (120)
6 3bb5_A Stress responsive alpha 99.9 1.3E-22 4.5E-27 127.2 9.0 74 2-76 38-120 (121)
7 3bgu_A Ferredoxin-like protein 99.9 8.3E-22 2.8E-26 122.7 7.7 72 2-76 39-115 (116)
8 3fmb_A Dimeric protein of unkn 99.9 1.3E-21 4.6E-26 122.2 7.9 70 3-76 43-117 (118)
9 3bde_A MLL5499 protein; stress 99.8 1.7E-20 5.8E-25 117.6 7.3 72 2-77 38-115 (120)
10 3gz7_A Putative antibiotic bio 97.2 0.004 1.4E-07 37.7 8.3 64 6-75 45-110 (115)
11 2gff_A LSRG protein; dimeric a 97.1 0.0075 2.6E-07 35.2 8.7 58 6-69 26-84 (106)
12 2fb0_A Conserved hypothetical 97.1 0.0079 2.7E-07 34.2 8.5 59 7-71 30-89 (94)
13 3kkf_A Putative antibiotic bio 96.9 0.012 4.2E-07 34.4 8.6 62 10-77 35-97 (105)
14 3bm7_A Protein of unknown func 96.8 0.014 4.9E-07 34.8 8.6 54 15-74 56-109 (115)
15 1y0h_A Hypothetical protein RV 96.8 0.0074 2.5E-07 34.7 6.9 56 7-69 31-87 (102)
16 2omo_A DUF176; structural geno 96.8 0.016 5.6E-07 35.1 8.8 56 8-69 50-106 (124)
17 4dpo_A Conserved protein; stru 96.7 0.014 4.8E-07 35.3 8.1 58 6-69 50-108 (119)
18 1x7v_A PA3566 protein, APC5058 96.7 0.011 3.8E-07 33.8 7.3 57 10-72 35-92 (99)
19 2bbe_A Hypothetical protein SO 96.7 0.015 5E-07 34.1 7.7 50 15-70 48-98 (108)
20 1tuv_A Protein YGIN; menadione 96.7 0.018 6.1E-07 34.4 8.2 57 15-72 38-97 (114)
21 3kg0_A Snoab; polyketide, anth 96.6 0.013 4.5E-07 36.1 7.5 59 5-69 46-105 (128)
22 1iuj_A Hypothetical protein TT 96.6 0.0053 1.8E-07 35.5 5.3 49 15-69 36-88 (106)
23 2pd1_A Hypothetical protein; u 96.6 0.021 7.3E-07 32.9 7.9 47 15-69 40-86 (104)
24 3e8o_A Uncharacterized protein 96.6 0.03 1E-06 33.6 8.7 49 15-69 54-102 (119)
25 4hl9_A Antibiotic biosynthesis 96.4 0.033 1.1E-06 33.8 8.2 62 7-74 49-111 (118)
26 4dn9_A Antibiotic biosynthesis 96.2 0.052 1.8E-06 32.9 8.3 59 6-70 45-104 (122)
27 1q8b_A Protein YJCS; structura 96.0 0.025 8.6E-07 33.1 6.1 56 10-71 43-99 (105)
28 2zdo_A Heme-degrading monooxyg 95.5 0.096 3.3E-06 30.6 7.3 57 3-63 19-82 (109)
29 3f44_A Putative monooxygenase; 95.4 0.12 4E-06 34.4 8.2 64 10-79 146-210 (220)
30 3lo3_A Uncharacterized conserv 94.7 0.059 2E-06 31.5 4.5 38 32-69 51-88 (94)
31 1sqe_A Hypothetical protein PG 94.6 0.13 4.4E-06 30.0 6.0 45 15-63 36-80 (109)
32 2fiu_A Conserved hypothetical 94.6 0.088 3E-06 31.0 5.2 40 35-74 55-95 (99)
33 2ftr_A BH0200; structural geno 94.6 0.37 1.3E-05 28.4 8.2 41 29-69 56-96 (108)
34 3hhl_A RPA0582; alpha-beta-bar 93.8 0.23 8E-06 31.2 6.2 38 32-69 86-123 (143)
35 1lq9_A Actva-ORF6 monooxygenas 93.7 0.36 1.2E-05 28.8 6.8 64 3-73 25-101 (112)
36 3tvz_A Putative uncharacterize 93.4 0.22 7.5E-06 32.0 5.7 49 9-64 99-148 (172)
37 3mcs_A Putative monooxygenase; 93.2 1 3.5E-05 29.9 8.9 59 15-79 148-206 (219)
38 3fgv_A Uncharacterized protein 92.0 0.24 8.1E-06 29.5 4.2 36 39-74 66-101 (106)
39 3hf5_A 4-methylmuconolactone m 91.7 0.55 1.9E-05 28.4 5.6 41 32-72 69-109 (116)
40 3hx9_A Protein RV3592; DI-heme 91.5 0.36 1.2E-05 29.4 4.6 56 15-76 37-93 (124)
41 3bf4_A Ethyl TERT-butyl ether 91.3 1.3 4.5E-05 27.2 7.1 41 28-69 71-111 (127)
42 1tz0_A Hypothetical protein; s 91.2 0.57 1.9E-05 27.8 5.2 44 15-62 41-84 (114)
43 3fj2_A Monooxygenase-like prot 91.2 1 3.5E-05 29.4 6.9 51 10-67 114-165 (186)
44 2cvi_A 75AA long hypothetical 90.4 1 3.4E-05 24.9 5.6 41 3-52 16-57 (83)
45 2go8_A Hypothetical protein YQ 90.4 0.56 1.9E-05 28.7 4.7 36 34-69 58-94 (122)
46 2zbc_A 83AA long hypothetical 89.4 1.2 4.2E-05 24.2 5.3 41 3-52 16-57 (83)
47 2djw_A Probable transcriptiona 88.7 1.5 5E-05 24.6 5.5 41 3-52 16-57 (92)
48 3f44_A Putative monooxygenase; 86.0 5.4 0.00019 26.1 9.0 62 11-78 37-99 (220)
49 2ril_A Antibiotic biosynthesis 85.3 2.8 9.5E-05 23.6 5.4 43 7-53 31-74 (99)
50 3mcs_A Putative monooxygenase; 79.4 11 0.00038 24.8 8.0 57 10-72 36-93 (219)
51 3i4p_A Transcriptional regulat 75.9 7.4 0.00025 23.9 5.4 41 3-52 80-121 (162)
52 2cg4_A Regulatory protein ASNC 75.4 8.6 0.00029 23.2 5.5 23 29-51 101-123 (152)
53 2jdj_A HAPK, REDY-like protein 74.8 11 0.00038 22.5 7.2 59 8-69 30-89 (105)
54 2cyy_A Putative HTH-type trans 74.5 9.7 0.00033 22.9 5.6 23 29-51 99-121 (151)
55 2p5v_A Transcriptional regulat 73.6 9.9 0.00034 23.2 5.5 22 30-51 105-126 (162)
56 2pn6_A ST1022, 150AA long hypo 70.5 14 0.00049 22.0 5.7 23 29-51 97-119 (150)
57 2e1c_A Putative HTH-type trans 69.8 14 0.00047 23.1 5.6 23 29-51 119-141 (171)
58 2dbb_A Putative HTH-type trans 69.0 12 0.00042 22.4 5.1 22 30-51 102-124 (151)
59 2cfx_A HTH-type transcriptiona 66.5 14 0.00048 22.0 4.9 22 30-51 98-119 (144)
60 1i1g_A Transcriptional regulat 58.8 16 0.00054 21.4 4.1 23 29-51 96-118 (141)
61 3a16_A Oxdre, aldoxime dehydra 55.1 17 0.00057 26.3 4.3 59 5-67 262-330 (373)
62 1xhj_A Nitrogen fixation prote 46.9 18 0.00062 20.7 2.8 26 57-82 13-42 (88)
63 2w25_A Probable transcriptiona 46.6 34 0.0012 20.3 4.3 23 29-51 100-122 (150)
64 4ae5_A Signal transduction pro 44.7 57 0.002 20.6 5.9 39 15-60 101-139 (167)
65 1vqs_A Hypothetical protein AG 35.4 63 0.0021 18.8 4.1 37 33-69 61-101 (116)
66 1iap_A Guanine nucleotide exch 32.5 17 0.00059 24.3 1.3 23 41-66 5-28 (211)
67 1vqy_A Hypothetical protein AG 29.9 84 0.0029 18.2 4.6 37 33-69 61-101 (116)
68 3cx8_B RHO guanine nucleotide 29.6 18 0.0006 24.1 0.9 21 41-64 23-44 (203)
69 3ab3_B RHO guanine nucleotide 26.7 21 0.00071 24.4 0.9 26 38-66 56-82 (246)
70 2qmw_A PDT, prephenate dehydra 21.3 1.3E+02 0.0045 20.3 4.2 38 29-73 226-263 (267)
71 1veh_A NIFU-like protein hirip 21.1 69 0.0024 18.3 2.3 27 56-82 18-49 (92)
No 1
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=99.91 E-value=1e-24 Score=134.75 Aligned_cols=79 Identities=68% Similarity=1.060 Sum_probs=72.9
Q ss_pred HHHHHHHhhcccc-----cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEee
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYK 76 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~ 76 (82)
++++++.+++|++ +++++ |+|.+++++++||||+|+++|+|.+|+++|+.||+|+++++.++|++++++++||+
T Consensus 28 ~~~~~~~l~~L~~~ip~i~~~~~-G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~ 106 (112)
T 1q4r_A 28 IEELIKGYANLVNLIEPMKAFHW-GKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYK 106 (112)
T ss_dssp HHHHHHHHHTHHHHCTTCCEEEE-EECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHHHhhhCCceEEEEE-ccCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcCcEEEeee
Confidence 4567777777775 89999 99999888889999999999999999999999999999999999999999999999
Q ss_pred cceee
Q 034816 77 PTTVR 81 (82)
Q Consensus 77 ~~~~~ 81 (82)
.++++
T Consensus 107 ~~~~~ 111 (112)
T 1q4r_A 107 PTSVS 111 (112)
T ss_dssp CCCSC
T ss_pred ccccc
Confidence 99886
No 2
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=99.90 E-value=6.1e-24 Score=130.90 Aligned_cols=79 Identities=32% Similarity=0.659 Sum_probs=72.1
Q ss_pred HHHHHHHhhcccc-----cceEEeceeC-CccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEe
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNV-SIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 75 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~-~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~ 75 (82)
++++++.++.|++ +++++ |+|. +++++++||||+++++|+|.||+++|+.||+|+++++.++|++++++++||
T Consensus 20 ~~~~~~~l~~L~~~ip~i~~~~~-G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~ 98 (111)
T 1rjj_A 20 VDEILKGLENLVSQIDTVKSFEW-GEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDF 98 (111)
T ss_dssp HHHHHHHHHHHHGGGGGSCEEEE-EEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEEE-cCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcceEEEEe
Confidence 4567777777775 89999 9999 988889999999999999999999999999999999999999999999999
Q ss_pred ecceee
Q 034816 76 KPTTVR 81 (82)
Q Consensus 76 ~~~~~~ 81 (82)
+.++++
T Consensus 99 ~~~~~~ 104 (111)
T 1rjj_A 99 PVAAVK 104 (111)
T ss_dssp EECTTC
T ss_pred Ecceec
Confidence 988764
No 3
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=99.90 E-value=1.9e-23 Score=128.10 Aligned_cols=75 Identities=39% Similarity=0.632 Sum_probs=68.0
Q ss_pred HHHHHHHhhcccc-----cceEEeceeCCcc--ccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEE
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNVSIE--NLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVID 74 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~~~e--~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D 74 (82)
++++++.+++|++ +++++ |+|.+++ ++++||||+|+++|+|.+|+++|+.||+|+++++.++|++++++++|
T Consensus 26 ~~~~~~~l~~L~~~ip~i~~~~~-G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D 104 (108)
T 1tr0_A 26 IDNYINDYTNLLDLIPSMKSFNW-GTDLGMESAELNRGYTHAFESTFESKSGLQEYLDSAALAAFAEGFLPTLSQRLVID 104 (108)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEE-EECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHTCHHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCceEEEEE-ccCCCccccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhCCcEEEE
Confidence 4566777777665 89999 9999987 88999999999999999999999999999999999999999999999
Q ss_pred eec
Q 034816 75 YKP 77 (82)
Q Consensus 75 ~~~ 77 (82)
|+.
T Consensus 105 ~~~ 107 (108)
T 1tr0_A 105 YFL 107 (108)
T ss_dssp EEC
T ss_pred EEe
Confidence 984
No 4
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=99.89 E-value=3.2e-23 Score=126.13 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=68.5
Q ss_pred HHHHHHHhhcccc-----cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEee
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYK 76 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~ 76 (82)
++++++.+++|++ +++++ |+|.+ ++++||||+++++|+|.+|+++|+.||+|+++++.++|++++++++||+
T Consensus 22 ~~~~~~~l~~L~~~ip~i~~~~~-G~~~~--~~~~~~~~~~~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~ 98 (103)
T 2qyc_A 22 FRTVDEYVARMKRECDGLLLYHF-GENVA--ARSQGYTHATSSAFVDAAAHDAYQVCPAHVAMKAFMGPRIKRVVVYDGE 98 (103)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEE-EECCC--TTCTTCCEEEEEEESSHHHHHHHTTCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhcCCCeEEEEE-CCCCC--CCCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcCcEEEEEe
Confidence 4567777777665 89999 99998 5789999999999999999999999999999999999999999999999
Q ss_pred ccee
Q 034816 77 PTTV 80 (82)
Q Consensus 77 ~~~~ 80 (82)
.+++
T Consensus 99 ~~~~ 102 (103)
T 2qyc_A 99 VPAI 102 (103)
T ss_dssp EECC
T ss_pred cCCc
Confidence 8765
No 5
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=99.89 E-value=9.9e-23 Score=127.64 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=67.6
Q ss_pred HHHHHHHhhcccc----cceEEeceeCCcc---ccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEE
Q 034816 2 IAELIRSCCGLEL----LAVKYKGKNVSIE---NLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVID 74 (82)
Q Consensus 2 i~~~~~~l~~L~~----~~~~~~G~~~~~e---~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D 74 (82)
+++++++|++|+. +++++ |+|.+++ ++++|||++|+++|+|.+|+++|+.||+|+++++.++|++++++|+|
T Consensus 38 ~~~~~~~l~~L~~Ip~i~~~~v-G~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~~HP~H~~~~~~~~p~~e~~~v~D 116 (120)
T 3bn7_A 38 RDKLIAGLKALKAIDVIQQLHV-GVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYRDHPLLQKFVADCSHLWSKVVVYD 116 (120)
T ss_dssp HHHHHHHHHGGGGSTTCSEEEE-ECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHHHTCHHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCCeEEEEE-ccCCCcccccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhccEEEEE
Confidence 3566777777766 89999 9999975 56899999999999999999999999999999999999999999999
Q ss_pred eec
Q 034816 75 YKP 77 (82)
Q Consensus 75 ~~~ 77 (82)
|+.
T Consensus 117 ~~~ 119 (120)
T 3bn7_A 117 SMS 119 (120)
T ss_dssp EEC
T ss_pred Eee
Confidence 975
No 6
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=99.88 E-value=1.3e-22 Score=127.19 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=67.9
Q ss_pred HHHHHHHhhcccc-----cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhh----hceEE
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANL----EKVLV 72 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~----~~~~v 72 (82)
++++++.+++|++ +++++ |+|.+|+++++|||++|+++|+|.+|+++|+.||+|+++++.++|++ +++++
T Consensus 38 ~~~~~~~l~~L~~~ip~i~~~~~-G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~p~~~gg~~~~~v 116 (121)
T 3bb5_A 38 IMEAMAILDGLAPELPGLTEFRH-GPNRDFEQKSERYPYGFLCTFTDKAALDAYAVHPTHQRAGGMLVASCRNGADGILV 116 (121)
T ss_dssp HHHHHHHHHHHGGGCTTEEEEEE-EEBCCTTSSCTTCCEEEEEEESSHHHHHHHHHSHHHHHHHHHHHHTBTTGGGGEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEE-CCCCCccccCCCeeEEEEEEECCHHHHHHHHcCHhHHHHHHHHHHHhCcCcCCEEE
Confidence 4567777777665 89999 99999888889999999999999999999999999999999999999 99999
Q ss_pred EEee
Q 034816 73 IDYK 76 (82)
Q Consensus 73 ~D~~ 76 (82)
+||+
T Consensus 117 ~D~~ 120 (121)
T 3bb5_A 117 VDLE 120 (121)
T ss_dssp EEEE
T ss_pred EeEE
Confidence 9997
No 7
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=99.86 E-value=8.3e-22 Score=122.74 Aligned_cols=72 Identities=13% Similarity=0.317 Sum_probs=66.7
Q ss_pred HHHHHHHhhcccc-----cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEee
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYK 76 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~ 76 (82)
++++++.+++|++ +++++ |+|.+ ++++|||++|+++|+|.+|+++|+.||+|+++++.++|++++++|+||+
T Consensus 39 ~~~~~~~l~~L~~~ip~i~~~~~-G~~~s--~~~~g~d~~l~~~F~s~edl~~Y~~hP~H~~~~~~~~p~~~~~~v~D~~ 115 (116)
T 3bgu_A 39 VEQVITALSKLPAAIPELKNYAF-GADLG--LAAGNYDFAVVADLDGEDGFRAYQDHPDHRAALAIIAPMLADRVAVQFA 115 (116)
T ss_dssp HHHHHHHHHHCCCCCTTEEEEEE-EECCS--CSTTCCSEEEEEEEEHHHHHHHHHHSHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCceEEEEE-ccCCC--CCCCCeeEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhCceEEEEEE
Confidence 4678888888876 89999 99998 5789999999999999999999999999999999999999999999997
No 8
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=99.86 E-value=1.3e-21 Score=122.24 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=63.5
Q ss_pred HHHHHHhhcccc-----cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEee
Q 034816 3 AELIRSCCGLEL-----LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYK 76 (82)
Q Consensus 3 ~~~~~~l~~L~~-----~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~ 76 (82)
+++.+.|++|++ +++++ |+|.++ ++|||++|+++|+|.+|+++|+.||+|+++++.++|++++++|+||+
T Consensus 43 ~~~~~~l~~L~~~IP~i~~~~v-G~~~s~---~~~yd~~l~~~F~s~e~l~~Y~~HP~H~~~~~~~~p~~e~~~vvDye 117 (118)
T 3fmb_A 43 NSFKEAIEALPAKISVIRKIEV-GLNMNP---GETWNIALYSEFDNLDDVKFYATHPEHVAAGKILAETKESRACVDYE 117 (118)
T ss_dssp HHHHHHHHTGGGTCTTCSEEEE-EECCCT---TCCCCEEEEEEESSHHHHHHHHHSHHHHHHHHTTTTTEEEEEEEEEE
T ss_pred HHHHHHHHHhhccCCCeEEEEE-eccCCC---CCCceEEEEEEECCHHHHHHHhCCHhHHHHHHHHHHhhcccEEEEEE
Confidence 456677877765 89999 999874 46999999999999999999999999999999999999999999998
No 9
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=99.82 E-value=1.7e-20 Score=117.56 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=63.2
Q ss_pred HHHHHHHhhcccc-----cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHH-HHHHhhhhhceEEEEe
Q 034816 2 IAELIRSCCGLEL-----LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEY-ANLFLANLEKVLVIDY 75 (82)
Q Consensus 2 i~~~~~~l~~L~~-----~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~-~~~~~~~~~~~~v~D~ 75 (82)
++++++++++|++ +++++ |+|.++ +++ ||++|+++|+|.+|+++|+.||+|+++ .+.++|++++++++||
T Consensus 38 ~~~~~~~l~~L~~~Ip~I~~~~v-G~~~~~--~~~-~d~~l~~~F~s~edl~~Y~~HP~H~~~v~~~~~p~~e~~~vvD~ 113 (120)
T 3bde_A 38 EKRFLVDAKKILSAIRGVTHFEQ-LRQISP--KID-YHFGFSMEFADQAAYTRYNDHPDHVAFVRDRWVPEVEKFLEIDY 113 (120)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEE-EECCCS--SSC-CCEEEEEEESSHHHHHHHHTSHHHHHHHHHTHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhhccCCceEEEEE-ccCCCC--CCC-ccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHHhccEEEEEE
Confidence 4567777766655 89999 999985 444 999999999999999999999999999 5899999999999999
Q ss_pred ec
Q 034816 76 KP 77 (82)
Q Consensus 76 ~~ 77 (82)
+.
T Consensus 114 e~ 115 (120)
T 3bde_A 114 VP 115 (120)
T ss_dssp CC
T ss_pred EE
Confidence 85
No 10
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}
Probab=97.17 E-value=0.004 Score=37.71 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=49.1
Q ss_pred HHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHH-hhhcChhHHHHHHHHhhhhhceEEEEe
Q 034816 6 IRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVA-EYVAHPAHVEYANLFLANLEKVLVIDY 75 (82)
Q Consensus 6 ~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~-~Y~~hP~H~~~~~~~~~~~~~~~v~D~ 75 (82)
++..++-++ +++.+ .++.. ++-.+.++..++|.++++ .|...|..+++.+.+.|++++.-.+..
T Consensus 45 ~~~~r~epGcl~y~l-~r~~~-----~p~~f~~~E~W~s~eal~~hf~~S~hf~~~~~~~~~ll~~~p~i~~ 110 (115)
T 3gz7_A 45 RPLFMRARGCHGVAL-HRSIE-----APQRYTLVVDWETVDNHMVDFRQSADFQEWRKLVGECFAEPPQVHH 110 (115)
T ss_dssp HHHHHTSTTEEEEEE-EEESS-----STTEEEEEEEESSHHHHHTTTTTSHHHHHHHHHHGGGBSSCCEEEE
T ss_pred HHHHhcCCCeEEEEE-EecCC-----CCCEEEEEEEECCHHHHHHHHhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334444455 88888 77753 234689999999999999 689999999999999999987544443
No 11
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=97.08 E-value=0.0075 Score=35.25 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=46.1
Q ss_pred HHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 6 IRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 6 ~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
++..++-++ +++.+ ..+.. ++-.+.++..|+|.++++++...|..+++.+.+.+++++
T Consensus 26 ~~~~r~epG~l~~~~-~~~~~-----~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~~~~~~l~~ 84 (106)
T 2gff_A 26 HLGSIREAGNLRFDV-LRDEH-----IPTRFYIYEAYTDEAAVAIHKTTPHYLQCVEQLAPLMTG 84 (106)
T ss_dssp HHHHHTSTTEEEEEE-EEESS-----CTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGGBSS
T ss_pred HHHHhCCCCcEEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence 333344444 88888 76653 234799999999999999999999999999999999875
No 12
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.0079 Score=34.16 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=45.9
Q ss_pred HHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceE
Q 034816 7 RSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVL 71 (82)
Q Consensus 7 ~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~ 71 (82)
+..++-++ +++.+ ..+.. ++-.+.++..++|.++++++...|..+++.+.+.+++++.-
T Consensus 30 ~~~~~epG~l~~~~-~~~~~-----~p~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~~~l~~~p 89 (94)
T 2fb0_A 30 ACSLKEEGCIAYDT-FESST-----RRDVFMICETWQNAEVLAAHEKTAHFAQYVGIIQELAEMKL 89 (94)
T ss_dssp HHHTTSTTEEEEEE-EECSS-----CTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHHHHSEEEE
T ss_pred HHHhcCCCceEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcCCc
Confidence 33333444 77887 66542 23479999999999999999999999999999999987643
No 13
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.012 Score=34.41 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=49.5
Q ss_pred hcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEeec
Q 034816 10 CGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKP 77 (82)
Q Consensus 10 ~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~~ 77 (82)
++-++ +++.+ ..+. +++-.+.++-.++|.+++++....|..+++.+.+.+++++..+....+
T Consensus 35 r~EpGcl~y~~-~~~~-----~~p~~~~~~E~w~d~~a~~~H~~s~~~~~~~~~~~~~l~~~~~~~l~p 97 (105)
T 3kkf_A 35 RLEPGVLVLYA-VAEK-----ERPNHVTILEIYADEAAYKSHIATPHFKKYKEGTLDMVQMLELIDATP 97 (105)
T ss_dssp HHCTTEEEEEE-EECS-----SCTTEEEEEEEESSHHHHHHHHTSHHHHHHHHHHGGGEEEEEEEEECC
T ss_pred hCCCCcEEEEE-EEeC-----CCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhhCcceEEEee
Confidence 33444 77777 5553 234579999999999999999999999999999999999877776653
No 14
>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=96.83 E-value=0.014 Score=34.83 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=44.4
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEE
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVID 74 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D 74 (82)
+++.+ .++.. +.-.+.++-.|+|.+++++....|..+++.+.+.+++++...+.
T Consensus 56 l~y~l-~~~~~-----~p~~f~~~E~W~d~ea~~aH~~s~~~~~~~~~~~~ll~~~~~i~ 109 (115)
T 3bm7_A 56 LVYQL-TRSKT-----EEGVYKVLELYASMDALKHHGGTDYFKAAGAAMGPTMAGAPVIE 109 (115)
T ss_dssp EEEEE-EECSS-----STTEEEEEEEESSHHHHHHHHHCHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcCCcEEE
Confidence 77887 66542 23479999999999999999999999999999999998754443
No 15
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=96.80 E-value=0.0074 Score=34.71 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=44.5
Q ss_pred HHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 7 RSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 7 ~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
+..++-++ +++.+ ..+ . ++-.+.++..|+|.+++++....|..+++.+.+.+++++
T Consensus 31 ~~~~~epG~l~~~~-~~~-~-----~~~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~~~l~~ 87 (102)
T 1y0h_A 31 TPTRAEDGCRSYDL-YES-A-----DGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTR 87 (102)
T ss_dssp HHHHHSTTEEEEEE-EEE-T-----TSSCEEEEEEESSHHHHHHHHTSHHHHHHHTTSGGGBSS
T ss_pred HHHhcCCCcEEEEE-EEe-C-----CCCEEEEEEEECCHHHHHHHhcChHHHHHHHHHHHHhcC
Confidence 33333444 78887 666 4 223689999999999999999999999999999999876
No 16
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=96.80 E-value=0.016 Score=35.14 Aligned_cols=56 Identities=2% Similarity=0.007 Sum_probs=44.9
Q ss_pred Hhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 8 SCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 8 ~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
..++-++ +.+.+ ..+.. ++-.+.++-.|+|.++++++...|..+++.+.+.+++++
T Consensus 50 ~sr~EpGcl~y~l-~~~~~-----dp~~f~~~E~W~d~eal~aH~~s~~~~~~~~~~~~ll~~ 106 (124)
T 2omo_A 50 QSIREPGNMRFDI-LQSAD-----DPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAE 106 (124)
T ss_dssp HHTTSTTEEEEEE-EEESS-----CTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGGBSS
T ss_pred HHhcCCCcEEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcC
Confidence 3333344 77887 66642 234799999999999999999999999999999999886
No 17
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=96.74 E-value=0.014 Score=35.26 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=46.4
Q ss_pred HHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 6 IRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 6 ~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
++..++-++ +++.+ .++.. ++-.+.++-.++|.++++++...|..+++.+.+.+++++
T Consensus 50 ~~~~r~EpGcl~y~l-~~~~~-----dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~ll~~ 108 (119)
T 4dpo_A 50 IEETLKEEGCIDYGV-YQELE-----NPEILTMLEEWKDEGSLDQHIRSDHFKEIFPLLSECLDK 108 (119)
T ss_dssp HHHHHTSTTEEEEEE-EEETT-----EEEEEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHTBSS
T ss_pred HHHHhcCCCcEEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcC
Confidence 333344444 78887 66643 345799999999999999999999999999999999985
No 18
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=96.73 E-value=0.011 Score=33.77 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=43.5
Q ss_pred hcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEE
Q 034816 10 CGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLV 72 (82)
Q Consensus 10 ~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v 72 (82)
++-++ +++.+ ..+.. ++-.+.++..|+|.++++++...|..+++.+.+.++.+...+
T Consensus 35 ~~epG~l~~~~-~~~~~-----~p~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~~~~~~~~v 92 (99)
T 1x7v_A 35 RAEAGCLQYDL-HQDRH-----DSHLFYMIEQWRDDAALERHQNTEHFLRFSRGNEALLQNVKI 92 (99)
T ss_dssp HHSTTEEEEEE-EECSS-----CTTEEEEEEEESSHHHHHHHHTSHHHHHHHTTCGGGEEEEEE
T ss_pred hCCCCceEEEE-EecCC-----CCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHhcCCceE
Confidence 33344 77777 66542 234689999999999999999999999999999888444433
No 19
>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}
Probab=96.68 E-value=0.015 Score=34.11 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=41.9
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHH-HHHHHhhhhhce
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE-YANLFLANLEKV 70 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~-~~~~~~~~~~~~ 70 (82)
+++.+ ..+.. ++-.+.++..++|.+++++....|..++ +.+.+.+++++.
T Consensus 48 l~~~~-~~~~~-----~p~~~~~~E~w~~~~a~~~H~~s~~~~~~~~~~~~~~l~~~ 98 (108)
T 2bbe_A 48 IRYEL-NVSRD-----EPRRVTFVEKFVDIAAFDEHCAKDAIQHYFHQVMPELVESF 98 (108)
T ss_dssp EEEEE-EECSS-----STTEEEEEEEESSHHHHHHHHTSHHHHHHHHHTHHHHEEEE
T ss_pred EEEEE-EecCC-----CCCEEEEEEEECCHHHHHHHhcChHHHHHHHHHHHHhcccc
Confidence 77777 65542 2346899999999999999999999999 999999999873
No 20
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=96.67 E-value=0.018 Score=34.40 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=44.1
Q ss_pred cceEEeceeCC---ccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEE
Q 034816 15 LAVKYKGKNVS---IENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLV 72 (82)
Q Consensus 15 ~~~~~~G~~~~---~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v 72 (82)
+++.+ ..+.. |-..+++-.+.++-.++|.+++++....|..+++.+.+.+++++..+
T Consensus 38 l~y~~-~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h~~~~~~~~~~l~~~~~i 97 (114)
T 1tuv_A 38 HGYAP-MVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNI 97 (114)
T ss_dssp EEEEE-ECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEE-EecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHhccCCEE
Confidence 77777 66621 00023445799999999999999999999999999999999887433
No 21
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=96.62 E-value=0.013 Score=36.07 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=44.9
Q ss_pred HHHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 5 LIRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 5 ~~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
+.+.+++.++ ++++. -++.. +.-.+.+++.++|.++++++..+|.+++..+.+.++...
T Consensus 46 ~~~~~~~~pGfi~~~L-~r~~~-----~p~~yv~~~~W~s~ea~~a~~~S~~f~a~~~~l~~~~~~ 105 (128)
T 3kg0_A 46 TAAFFARQPGFVRHTL-LRERD-----KDNSYVNIAVWTDHDAFRRALAQPGFLPHATALRALSTS 105 (128)
T ss_dssp HHHHHHTSTTEEEEEE-EECTT-----CSSEEEEEEEESSHHHHHHHHHCGGGHHHHHHHHHHEEE
T ss_pred HHHHHhcCCCccEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHHcCHHHHHHHHhhhhhccC
Confidence 3344455555 77777 65542 234679999999999999999999999999988877643
No 22
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=96.59 E-value=0.0053 Score=35.52 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=40.1
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHh----hhhhc
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFL----ANLEK 69 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~----~~~~~ 69 (82)
+++.+ .++.. ++-.+.++..|+|.++++++..+|.++++.+.+. +++..
T Consensus 36 l~~~l-~~~~~-----~~~~~~~~~~W~s~~a~~a~~~s~~~~~~~~~~~~~~~~~~~~ 88 (106)
T 1iuj_A 36 IRNLV-LRPKN-----PGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTLPKEAFLG 88 (106)
T ss_dssp EEEEE-EEESS-----TTSCEEEEEEESCHHHHHHHHTSHHHHHHTTTTSSSSCSCBSS
T ss_pred eEEEE-EecCC-----CCCeEEEEEEECCHHHHHHHhcCHHHHHHHhccccCCcccccC
Confidence 77777 66653 2236999999999999999999999999999887 76654
No 23
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=96.58 E-value=0.021 Score=32.93 Aligned_cols=47 Identities=13% Similarity=-0.123 Sum_probs=40.6
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
+++.+ -++ . +-.+.++-.|+|.++++++...|..+++.+.+.+++++
T Consensus 40 l~~~~-~~~-~------p~~~~~~E~w~~~~a~~~H~~s~~~~~~~~~~~~ll~~ 86 (104)
T 2pd1_A 40 TAWFA-LKF-G------PSTFGVFDAFADEAGRQAHLNGQIAAALMANAATLLSS 86 (104)
T ss_dssp EEEEE-EEC-S------SSEEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHHBSS
T ss_pred EEEEE-Eec-C------CCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcC
Confidence 67776 555 2 34799999999999999999999999999999999886
No 24
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=96.58 E-value=0.03 Score=33.63 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=41.8
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
+.+.+ ..+.. +.-.+.++-.|+|.++++++...|..+++.+.+.+++..
T Consensus 54 l~y~l-~~~~~-----dp~~f~~~E~W~d~ea~~aH~~s~~~~~~~~~~~~ll~~ 102 (119)
T 3e8o_A 54 LLYLV-SEDLS-----QPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVT 102 (119)
T ss_dssp EEEEE-EEETT-----STTEEEEEEEESSHHHHHHHHTCHHHHHHHHHHHHTTCC
T ss_pred EEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcC
Confidence 78887 66642 345799999999999999999999999999999999754
No 25
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=96.40 E-value=0.033 Score=33.81 Aligned_cols=62 Identities=11% Similarity=-0.008 Sum_probs=47.6
Q ss_pred HHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEE
Q 034816 7 RSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVID 74 (82)
Q Consensus 7 ~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D 74 (82)
+..++-++ +++.+ -.+.. +.-.+.++-.++|.++++++...|..+++.+.+.+++++...+.
T Consensus 49 ~~tr~EpGcl~y~l-~~d~~-----dp~~f~~~E~w~d~~al~~H~~s~h~~~~~~~l~~~l~~~~~i~ 111 (118)
T 4hl9_A 49 EKTRQEPLCLAYDL-FVDQK-----DPGHFVFIEEWPDRAALDIHCATEHFTRLVPLINAHQRQDGTVV 111 (118)
T ss_dssp HHHHTSTTCCEEEE-EEETT-----EEEEEEEEEEESSHHHHHHHHHSHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCcEEEEE-EEcCC-----CCCEEEEEEEeCCHHHHHHHHCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33333344 77777 65542 34579999999999999999999999999999999998744443
No 26
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=96.20 E-value=0.052 Score=32.93 Aligned_cols=59 Identities=7% Similarity=0.033 Sum_probs=47.0
Q ss_pred HHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhce
Q 034816 6 IRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKV 70 (82)
Q Consensus 6 ~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~ 70 (82)
++..++-++ +++.+ .++.. +.-.+.++-.++|.++++++...|.-+++.+.+.+++++.
T Consensus 45 ~~~~r~EpGcl~y~l-~~~~~-----dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~ll~~~ 104 (122)
T 4dn9_A 45 VEGASSMPGCLSYVV-AQDPK-----DPDAIWITEVWDSPESHKASLSLPSVQDAIACGRPLIAAL 104 (122)
T ss_dssp HHHTTTCTTEEEEEE-EEETT-----EEEEEEEEEEESCHHHHHHGGGSHHHHHHHHHHGGGEEEE
T ss_pred HHHHhCCCCCEEEEE-EecCC-----CCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcCC
Confidence 333444444 88888 66642 3456899999999999999999999999999999999874
No 27
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6
Probab=96.03 E-value=0.025 Score=33.08 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=43.8
Q ss_pred hcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceE
Q 034816 10 CGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVL 71 (82)
Q Consensus 10 ~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~ 71 (82)
++-++ +++.+ ..+.. .+-.+.++-.|+|.+++++....|..+++.+.+.+++++.-
T Consensus 43 r~epGcl~~~~-~~~~~-----~p~~~~~~E~w~d~~a~~~H~~s~~~~~~~~~~~~~l~~~e 99 (105)
T 1q8b_A 43 NKEEGCITFHA-YPLEP-----SERKIMLWEIWENEEAVKIHFTKKHTIDVQKQELTEVEWLM 99 (105)
T ss_dssp TTSTTEEEEEE-EECCG-----GGCEEEEEEEESSHHHHHHHTTSHHHHHHHTTTCEEEEEEE
T ss_pred hcCCCcEEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhhChh
Confidence 33344 77777 65542 23479999999999999999999999999999888877643
No 28
>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A
Probab=95.54 E-value=0.096 Score=30.59 Aligned_cols=57 Identities=5% Similarity=-0.032 Sum_probs=41.5
Q ss_pred HHHHHHhhcc------cc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHH
Q 034816 3 AELIRSCCGL------EL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLF 63 (82)
Q Consensus 3 ~~~~~~l~~L------~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~ 63 (82)
+++++.+..+ ++ +++++ -++... . ++-.+.++..++|.++++++...|.|+++.+..
T Consensus 19 ~~f~~~~~~~~~~~~~pG~i~~~l-~r~~~~--~-~~~~~~~~~~W~s~ea~~a~~~s~~f~~~~~~~ 82 (109)
T 2zdo_A 19 KDIIERFYTRHGIETLEGFDGMFV-TQTLEQ--E-DFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHV 82 (109)
T ss_dssp HHHHHHTTSCCSGGGCTTEEEEEE-EEETTC--S-SEEEEEEEEEESCHHHHHHHHTSHHHHHHHTTC
T ss_pred HHHHHHHhcccccccCCCeEEEEE-EecCCC--C-CceEEEEEEEECCHHHHHHHHcCHHHHHHHHhh
Confidence 4566666555 22 67777 666531 1 124799999999999999999999999998744
No 29
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=95.43 E-value=0.12 Score=34.36 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=52.4
Q ss_pred hcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEeecce
Q 034816 10 CGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTT 79 (82)
Q Consensus 10 ~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~~~~ 79 (82)
++-++ +.+.+ ..+.. +.-.+.++-.++|.+++++....|..+++.+.+.+++++.-+..+++..
T Consensus 146 r~EpGcl~y~~-~~d~~-----~p~~f~~~E~w~d~~Al~aH~~s~hf~~~~~~~~~ll~~~~v~~l~p~~ 210 (220)
T 3f44_A 146 ASEPGMEIMMS-GTNID-----NPNEWYFIEVYANDEAYDIHVKTPHYKEYIEETDGMVKSRDVKTLVRDT 210 (220)
T ss_dssp HHCTTEEEEEE-EEETT-----EEEEEEEEEEESSHHHHHHHTTSHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred hCCCCcEEEEE-EEcCC-----CCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 33444 78888 77643 3467999999999999999999999999999999999998887777544
No 30
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=94.65 E-value=0.059 Score=31.48 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=32.7
Q ss_pred CeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 32 GFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 32 gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
.++..++++|+|.++...+-++|+.|+++..-....+.
T Consensus 51 ~~~~~viieFps~~aa~a~y~SpeYq~a~~~R~~a~~~ 88 (94)
T 3lo3_A 51 EHKAQVILEFPSREDAYNWYHSEEYQALISTRDLGMDS 88 (94)
T ss_dssp CCSEEEEEEESSHHHHHHHHHSHHHHTTHHHHHHHEEE
T ss_pred CCCeEEEEECCCHHHHHHHHCCHHHHHHHHHHHhcCce
Confidence 47999999999999999999999999998865555543
No 31
>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*
Probab=94.65 E-value=0.13 Score=29.96 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=33.4
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHH
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLF 63 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~ 63 (82)
+++.+ -++... . ..-.+.++..++|.++++++..+|.|++..+..
T Consensus 36 l~~~l-~r~~~~--~-~~~~~~~~~~W~s~ea~~a~~~s~~f~~~~~~~ 80 (109)
T 1sqe_A 36 QQMFV-TKTLNT--E-DTDEVKILTIWESEDSFNNWLNSDVFKEAHKNV 80 (109)
T ss_dssp EEEEE-EEETTC--S-SSEEEEEEEEESCHHHHHHHHTSHHHHHCC---
T ss_pred EEEEE-EEcCCC--C-CCcEEEEEEEECCHHHHHHHHcCHHHHHHHhcc
Confidence 67777 666531 1 115799999999999999999999999988765
No 32
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=94.60 E-value=0.088 Score=31.01 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=32.4
Q ss_pred EEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc-eEEEE
Q 034816 35 HIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK-VLVID 74 (82)
Q Consensus 35 ~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~-~~v~D 74 (82)
-.++++|.|.++...+-++|..|+.+..-....+. +++++
T Consensus 55 ~~viieFpS~~aa~~~~~s~~Yq~a~~~R~~a~~~~~~ive 95 (99)
T 2fiu_A 55 RNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIVE 95 (99)
T ss_dssp EEEEEEESSHHHHHHHHHSHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEECCCHHHHHHHHcCHHHHHHHHHHHhhhceeEEEEe
Confidence 78899999999999999999999999866555554 44443
No 33
>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Probab=94.55 E-value=0.37 Score=28.43 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=34.9
Q ss_pred cCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 29 LHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
...+|+.+..+.|+|.+++++....|.-+++.+-+..+.+.
T Consensus 56 ~~~~yd~iael~fds~ea~~aa~~s~e~~~~~~D~~~F~d~ 96 (108)
T 2ftr_A 56 GESKFYLMCEMYYDDHESLQQAMRTDEGKASGKDAMKFAGK 96 (108)
T ss_dssp BCCSEEEEEEEEESSHHHHHHHHHSHHHHHHHHHHHHHTGG
T ss_pred CCCCeeEEEEEEECCHHHHHHHHcCHhHHHHHHHHHHhcCC
Confidence 34589999999999999999999999888888777766654
No 34
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=93.80 E-value=0.23 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=33.7
Q ss_pred CeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 32 GFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 32 gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
.|+.++++.|.|.++..++-.+|+.|++...-....++
T Consensus 86 ~~~~~viieFPS~~aa~a~y~SpeYq~a~~~R~~a~~~ 123 (143)
T 3hhl_A 86 HWDHVFIAEYPSVAAFVEMIRDPVYREAVKHRQAAVED 123 (143)
T ss_dssp CCSEEEEEEESCHHHHHHHHHCHHHHHHHHHHHHHEEE
T ss_pred CCCeEEEEECCCHHHHHHHHcCHHHHHHHHHHHHhhcc
Confidence 48999999999999999999999999998866666664
No 35
>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin, dihydroka streptomyces coelicolor, oxidoreductase; HET: PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB: 1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*
Probab=93.74 E-value=0.36 Score=28.81 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=46.9
Q ss_pred HHHHHHhhcccc---------cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhh----hcChhHHHHHHHHhhhhhc
Q 034816 3 AELIRSCCGLEL---------LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEY----VAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 3 ~~~~~~l~~L~~---------~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y----~~hP~H~~~~~~~~~~~~~ 69 (82)
+++++.+..+.. ++++. -++. .+-+..++..++|.+++++. ...|.-+++.+.+.+++++
T Consensus 25 ~~~~~~l~~~~~~~~r~epG~i~y~L-h~~~------d~~~~v~~e~W~s~ea~~ah~~~~~~s~~f~~~~~~~~~l~~~ 97 (112)
T 1lq9_A 25 HKLVELATGGVQEWIREVPGFLSATY-HAST------DGTAVVNYAQWESEQAYRVNFGADPRSAELREALSSLPGLMGP 97 (112)
T ss_dssp HHHHHHHTTTTTGGGGGSTTEEEEEE-EEET------TSSEEEEEEEESCHHHHHHHTTTSHHHHHHHHHHHTSTTBCSC
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEE-EEcC------CCCeEEEEEEECCHHHHHHHHhcccCCHHHHHHHHHhHHHhcC
Confidence 455666666532 56665 4443 23455999999999999999 9999999999999888877
Q ss_pred eEEE
Q 034816 70 VLVI 73 (82)
Q Consensus 70 ~~v~ 73 (82)
..++
T Consensus 98 ~~~~ 101 (112)
T 1lq9_A 98 PKAV 101 (112)
T ss_dssp CEEE
T ss_pred ccce
Confidence 5443
No 36
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=93.38 E-value=0.22 Score=31.97 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=28.3
Q ss_pred hhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHh
Q 034816 9 CCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFL 64 (82)
Q Consensus 9 l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~ 64 (82)
+++.++ ++++. -++.. + -.+.+++.++|.++++++..+|+|++..+...
T Consensus 99 l~~~pGfi~~~l-lr~~~--~----~~y~~~t~Wes~eaf~aw~~S~~f~~ah~~~g 148 (172)
T 3tvz_A 99 VENEPGFEAIRV-LRPLD--S----DTYVILTLWETERAFQDWQQSDSYKEAHKKRG 148 (172)
T ss_dssp HTTSTTEEEEEE-EEESS--S----SEEEEEEEESCHHHHHHHTCC-----------
T ss_pred HhcCCCceEEEE-EecCC--C----CEEEEEEEECCHHHHHHHHcCHHHHHHHHhcC
Confidence 334444 77777 65543 2 35789999999999999999999999888776
No 37
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=93.17 E-value=1 Score=29.93 Aligned_cols=59 Identities=7% Similarity=-0.013 Sum_probs=50.1
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEeecce
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTT 79 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~~~~ 79 (82)
+.+.+ ..+.. +.-.+.|+=.++|.++++.-...|.-+++.+.+.+++++..+.+.++..
T Consensus 148 l~y~~-~~~~~-----~p~~f~~~E~w~d~~A~~aH~~s~Hf~~~~~~~~~~l~~~~~~~l~~~~ 206 (219)
T 3mcs_A 148 LLVYL-GTDRR-----NFNKWCLFEVYKDIDSYLNHRSAKYFKDYITQTKDMIAGKKRAELQVLK 206 (219)
T ss_dssp EEEEE-EEETT-----EEEEEEEEEEESSHHHHHHHHTSHHHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEEEE-EecCC-----CCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHhCCceeeccchh
Confidence 78888 77653 3457999999999999999999999999999999999988777776544
No 38
>3fgv_A Uncharacterized protein with ferredoxin-like fold; phosphoserine aminotransferase SERC, structural genomics; HET: MSE; 1.30A {Silicibacter pomeroyi dss-3}
Probab=92.05 E-value=0.24 Score=29.48 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=32.2
Q ss_pred EEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEE
Q 034816 39 STFESTEGVAEYVAHPAHVEYANLFLANLEKVLVID 74 (82)
Q Consensus 39 ~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D 74 (82)
..++|.++++.|..-|.-+++.+.+.+++++-..+.
T Consensus 66 E~W~s~eal~~h~~~~~~~~~~~~l~~lla~~p~I~ 101 (106)
T 3fgv_A 66 HIWETPDALEAYLTWRADRGDFLEINEYLEVEQDFK 101 (106)
T ss_dssp EEESSHHHHHHHHHHHTTCHHHHHGGGGBSSCCEEE
T ss_pred EEECCHHHHHHHHcCHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999999999999998754443
No 39
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=91.65 E-value=0.55 Score=28.40 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=36.8
Q ss_pred CeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEE
Q 034816 32 GFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLV 72 (82)
Q Consensus 32 gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v 72 (82)
+||-+-.+-|+|.+|+++...+|.-++..+........+..
T Consensus 69 ~~DgiaElwF~d~ea~~aa~~sp~~~a~~~d~~~F~~~i~~ 109 (116)
T 3hf5_A 69 RIDAIGECWFASEEQYQVYMESDIRKAWFEHGKYFIGQLKP 109 (116)
T ss_dssp CCCEEEEEEESSHHHHHHHHHCHHHHHHHHHHHHHCSEEEE
T ss_pred CcCEEEEEEECCHHHHHHHhCCHHHHHHHhhHHHhhhhhhh
Confidence 89999999999999999999999999999888877776543
No 40
>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}
Probab=91.46 E-value=0.36 Score=29.43 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=36.2
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHH-HHhhhhhceEEEEee
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYAN-LFLANLEKVLVIDYK 76 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~-~~~~~~~~~~v~D~~ 76 (82)
+++++ -++.. ..=.+.++..++|.++++++..+|..++-.. ..+|+..+.-.+-|+
T Consensus 37 l~~~L-~r~~~-----~p~~yv~~~~WeS~ea~~aw~~S~fr~ah~~~~~~~~~~g~p~~efe 93 (124)
T 3hx9_A 37 LGFQL-LRPVK-----GEERYFVVTHWESDEAFQAWANGPAIAAHAGHRANPVATGASLLEFE 93 (124)
T ss_dssp EEEEE-EEEEE-----SCCSEEEEEEESCHHHHHHHHHTHHHHTTTTCCCCCCCCCEEEEEEE
T ss_pred eEEEE-EeCCC-----CCCEEEEEEEECCHHHHHHHHhChHHHHhhcccCCCcccCCCceeEE
Confidence 77777 65542 1234899999999999999999994333322 256666553333343
No 41
>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}
Probab=91.29 E-value=1.3 Score=27.18 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=31.0
Q ss_pred ccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 28 NLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 28 ~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
+...+|+.+..+.|+|.|++++-. .|.=+++.+-+..+...
T Consensus 71 g~~~~yd~iael~FdS~eal~aA~-~~~~~~v~aDv~nFtd~ 111 (127)
T 3bf4_A 71 GAPPAFVAMCAFICDSAENFYAAM-YYHGAEILGDIANYTDI 111 (127)
T ss_dssp TCCCSEEEEEEEEESCHHHHHHHH-HHHHHHHHHTGGGTBCC
T ss_pred CCCCCEEEEEEEEECCHHHHHHHh-CccHHHHHhhHHHhCCC
Confidence 344689999999999999999988 56556666665555543
No 42
>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5
Probab=91.16 E-value=0.57 Score=27.79 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=33.1
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHH
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANL 62 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~ 62 (82)
++++. -++... ..+=.+.+++.++|.++++++..+|.|++..+.
T Consensus 41 i~~~l-lr~~~~---~~~~~y~~~~~W~s~eaf~aw~~S~~f~~~~~~ 84 (114)
T 1tz0_A 41 IDLSV-LVKKVR---RGDEEVVVMIRWESEEAWKNWETSEEHLAGHRA 84 (114)
T ss_dssp EEEEE-EECCCS---SSSEEEEEEEEESCHHHHHHHHTCSCCCGGGSS
T ss_pred eEEEE-EEcCCC---CCCcEEEEEEEECCHHHHHHHHcCHHHHHHHHh
Confidence 55665 444321 123479999999999999999999999987764
No 43
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=91.15 E-value=1 Score=29.44 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=38.8
Q ss_pred hcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhh
Q 034816 10 CGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANL 67 (82)
Q Consensus 10 ~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~ 67 (82)
+..++ ++++. -++.. +=.+.+++.++|.+|++++...|+|++..+.+++.-
T Consensus 114 ~~~pGFis~eL-Lr~~~------~~~yv~lT~WeseeaF~aW~~S~afr~ah~~l~~~g 165 (186)
T 3fj2_A 114 SETPGLQSTKL-TKAMN------TNQFLIVSFWDSEVFFQEWKKTPLHKEITSIMKKNN 165 (186)
T ss_dssp GGSTTEEEEEE-EEETT------SSEEEEEEEESSHHHHHHHTTSHHHHHHHHHHHHTC
T ss_pred hcCCCceEEEE-EecCC------CCEEEEEEEECCHHHHHHHHcCHHHHHHHHhhhccc
Confidence 33444 77777 55542 356889999999999999999999999997666543
No 44
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=90.39 E-value=1 Score=24.88 Aligned_cols=41 Identities=5% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhc
Q 034816 3 AELIRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 52 (82)
Q Consensus 3 ~~~~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~ 52 (82)
+++.+.+.+++. .++.. .+++||+.+.+.++|.++++.+..
T Consensus 16 ~~~~~~l~~~peV~e~~~---------vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 16 REVMEKLLAMPEVKEAYV---------VYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp HHHHHHHHTSTTEEEEEE---------CBSSCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhCCCCeeEEEE---------EcccCCEEEEEEECCHHHHHHHHH
Confidence 466777777776 44443 457899999999999999988764
No 45
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=90.36 E-value=0.56 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=21.2
Q ss_pred eEEEEEEECCHhhHHhhhcChhHHHHHHH-Hhhhhhc
Q 034816 34 THIFESTFESTEGVAEYVAHPAHVEYANL-FLANLEK 69 (82)
Q Consensus 34 ~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~-~~~~~~~ 69 (82)
-..-++.++|.++++++..+|.|++..+. .....++
T Consensus 58 ~~is~SyW~deeai~aW~~~~eHr~Aq~~Gr~~w~~~ 94 (122)
T 2go8_A 58 RGITVSYWDSMDAINHWRHHTEHQAAKEKGRSVWYES 94 (122)
T ss_dssp EEEEEEEESCHHHHHHHHHHC-------------CCE
T ss_pred CEEEEEEeCCHHHHHHHHhCHHHHHHHHhHHHHHhcc
Confidence 57888999999999999999999998875 5555553
No 46
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=89.42 E-value=1.2 Score=24.17 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=30.6
Q ss_pred HHHHHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhc
Q 034816 3 AELIRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 52 (82)
Q Consensus 3 ~~~~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~ 52 (82)
+++.+.+.+++. .++.. .+++||+.+.+.+.|.++++.+..
T Consensus 16 ~~~~~~l~~~peV~~~~~---------vtG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHV---------VYGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp HHHHHHHTTCTTEEEEEE---------CSSSCSEEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEE---------EeccCCEEEEEEECCHHHHHHHHH
Confidence 456667777766 34433 457899999999999999987763
No 47
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=88.66 E-value=1.5 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=31.4
Q ss_pred HHHHHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhc
Q 034816 3 AELIRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 52 (82)
Q Consensus 3 ~~~~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~ 52 (82)
+++.+.+.+++. .++.. .++.||+.+.+.++|.++++.+..
T Consensus 16 ~~~~~~l~~~peV~~~~~---------vtG~~D~ll~v~~~d~~~l~~~l~ 57 (92)
T 2djw_A 16 QALGEAIAELPQVAEVYS---------VTGPYDLVALVRLKDVEELDDVVT 57 (92)
T ss_dssp HHHHHHHTTSTTEEEEEE---------ESSSSSEEEEEEESSGGGHHHHCC
T ss_pred HHHHHHHhcCCCeEEEEE---------eecCCCEEEEEEECCHHHHHHHHH
Confidence 466677777776 44433 456899999999999999999874
No 48
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=86.05 E-value=5.4 Score=26.12 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=49.7
Q ss_pred cccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEEEeecc
Q 034816 11 GLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPT 78 (82)
Q Consensus 11 ~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~D~~~~ 78 (82)
+-++ +.+.+ ..+.. ++-.+.++=.|+|.++++.-...|.-++|.+.+.+++++..+++..+.
T Consensus 37 ~E~G~l~y~~-~~~~~-----~p~~~~~~E~y~d~~A~~~H~~s~h~~~~~~~~~~~l~~~~~~~l~p~ 99 (220)
T 3f44_A 37 AEEGTLLIGS-GHDDA-----HGEDNYEIEVFRNKGAEDLHIAGSHADDFVETVNKIATKQKVIDLHPE 99 (220)
T ss_dssp TSTTEEEEEE-EEETT-----EEEEEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCeEEEEE-EecCC-----CCcEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhhCCceeeeeeE
Confidence 3344 77777 66542 356799999999999999999999999999999999998777765543
No 49
>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}
Probab=85.26 E-value=2.8 Score=23.63 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=29.4
Q ss_pred HHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcC
Q 034816 7 RSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAH 53 (82)
Q Consensus 7 ~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~h 53 (82)
+.+++.++ ++++. -++.. ..+.|.+.++..++|.+++++...|
T Consensus 31 ~~~~~~pG~i~~~l-~~~~~---~~~~~~~~~~~~W~s~ea~~a~~~~ 74 (99)
T 2ril_A 31 DFMAQQPGYLSTQL-HQSID---EGATYQLINVAIWQSEADFYQAAQK 74 (99)
T ss_dssp HHHTTSTTEEEEEE-EECSS---TTSSCSEEEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCCeeeEEE-eecCC---CCCeEEEEEEEEECCHHHHHHHHHh
Confidence 33444445 77777 66543 2234778999999999999995544
No 50
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=79.39 E-value=11 Score=24.83 Aligned_cols=57 Identities=9% Similarity=-0.008 Sum_probs=45.6
Q ss_pred hcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEE
Q 034816 10 CGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLV 72 (82)
Q Consensus 10 ~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v 72 (82)
++-+| +.+.+ ..+. +++-.+.|+=.|+|.++++.=...|.-++|.+.+.+++++..+
T Consensus 36 r~EpG~l~y~~-~~~~-----~~p~~fv~~E~y~d~~A~~~H~~s~Hf~~f~~~~~~~l~~~~~ 93 (219)
T 3mcs_A 36 GVEQGVLGLFA-ATDE-----RDKTTSYIVEIYNDYLAFSNHTKNQASKDFKAVIPQIAEGNLN 93 (219)
T ss_dssp HHCSSEEEEEE-EEEC-----SSSCEEEEEEEESSHHHHHHHHHSHHHHHHHHHHHHHEEEEEE
T ss_pred hcCCCeEEEEE-EeeC-----CCCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHHhCCcc
Confidence 33444 77777 6664 2456799999999999999999999999999999999987443
No 51
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=75.93 E-value=7.4 Score=23.94 Aligned_cols=41 Identities=0% Similarity=0.015 Sum_probs=28.3
Q ss_pred HHHHHHhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhc
Q 034816 3 AELIRSCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 52 (82)
Q Consensus 3 ~~~~~~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~ 52 (82)
+++.+.+..++. ..+.. .+++||+.+.+.+.|.++++.+..
T Consensus 80 ~~~~~~l~~~peV~~~~~---------vtG~~D~~l~v~~~d~~~l~~~l~ 121 (162)
T 3i4p_A 80 KRFSEVVSEFPEVVEFYR---------MSGDVDYLLRVVVPDIAAYDAFYK 121 (162)
T ss_dssp HHHHHHHHHCTTEEEEEE---------CCSSCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeee---------cCCCCCEEEEEEECCHHHHHHHHH
Confidence 455555655555 22222 346799999999999999987653
No 52
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.38 E-value=8.6 Score=23.15 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=20.2
Q ss_pred cCCCeeEEEEEEECCHhhHHhhh
Q 034816 29 LHQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
.+++||+.+.+.+.|.++++.+.
T Consensus 101 vtG~~d~~~~v~~~d~~~l~~~l 123 (152)
T 2cg4_A 101 TTGHYSIFIKVMCRSIDALQHVL 123 (152)
T ss_dssp ESSSCSEEEEEEESCHHHHHHHH
T ss_pred EecccCEEEEEEECCHHHHHHHH
Confidence 35689999999999999998876
No 53
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=74.80 E-value=11 Score=22.52 Aligned_cols=59 Identities=7% Similarity=0.042 Sum_probs=47.1
Q ss_pred Hhhcccc-cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhc
Q 034816 8 SCCGLEL-LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 69 (82)
Q Consensus 8 ~l~~L~~-~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~ 69 (82)
.+.+|++ .+|.+ -+..+. ..-.|.++-++.++|++++..=...|.=+++.+.+..+.+-
T Consensus 30 ~~~~LpsVrsF~V-~R~~~~--g~~py~yiEvi~v~s~eaf~~~m~S~~~~~~~~dF~~fAdv 89 (105)
T 2jdj_A 30 TCPDLPSVVRFDV-HRASLQ--ANAPYHYVEVIKITDRAAFDADMETSTFAGLVQAFSRMAEV 89 (105)
T ss_dssp HGGGCTTEEEEEE-EECCCC--TTCSCSEEEEEEESCHHHHHHHHTSHHHHHHHHHHHHHEEE
T ss_pred hccCCCcceeEEE-EecccC--CCCCeeEEEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4566777 78887 666543 33589999999999999999888999999999887766553
No 54
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=74.51 E-value=9.7 Score=22.92 Aligned_cols=23 Identities=4% Similarity=0.251 Sum_probs=19.8
Q ss_pred cCCCeeEEEEEEECCHhhHHhhh
Q 034816 29 LHQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
.+++||+.+.+.+.|.++++.+.
T Consensus 99 ~tG~~d~~~~v~~~d~~~l~~~~ 121 (151)
T 2cyy_A 99 TTGDYDMVVKIRTKNSEELNNFL 121 (151)
T ss_dssp CSSSSSEEEEEEESSHHHHHHHH
T ss_pred ecCCCCEEEEEEECCHHHHHHHH
Confidence 34689999999999999998765
No 55
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.56 E-value=9.9 Score=23.17 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.5
Q ss_pred CCCeeEEEEEEECCHhhHHhhh
Q 034816 30 HQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 30 ~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
+++||+.+.+.+.|.++++.+.
T Consensus 105 tG~~d~~~~v~~~d~~~l~~~l 126 (162)
T 2p5v_A 105 TGETDYLLQAFFTDMNAFSHFV 126 (162)
T ss_dssp SSSCSEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEEECCHHHHHHHH
Confidence 4579999999999999998875
No 56
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.52 E-value=14 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.0
Q ss_pred cCCCeeEEEEEEECCHhhHHhhh
Q 034816 29 LHQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
.++.||+.+.+..+|.++++.+.
T Consensus 97 ~tG~~d~~~~v~~~d~~~l~~~l 119 (150)
T 2pn6_A 97 VLGDNDFIVMARYKTREEFMEKF 119 (150)
T ss_dssp CSSSCSEEEEEEESSHHHHHHHT
T ss_pred hcCcCCEEEEEEECCHHHHHHHH
Confidence 34679999999999999998876
No 57
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.82 E-value=14 Score=23.09 Aligned_cols=23 Identities=4% Similarity=0.251 Sum_probs=20.0
Q ss_pred cCCCeeEEEEEEECCHhhHHhhh
Q 034816 29 LHQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
.+++||+.+.+.+.|.++++.+.
T Consensus 119 vtG~~d~l~~v~~~d~~~l~~~l 141 (171)
T 2e1c_A 119 TTGDYDMVVKIRTKNSEELNNFL 141 (171)
T ss_dssp CSSSSSEEEEEEESSHHHHHHHH
T ss_pred eeCCCCEEEEEEECCHHHHHHHH
Confidence 34689999999999999998765
No 58
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.99 E-value=12 Score=22.37 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=19.4
Q ss_pred CCCeeEEEEEEE-CCHhhHHhhh
Q 034816 30 HQGFTHIFESTF-ESTEGVAEYV 51 (82)
Q Consensus 30 ~~gy~~~l~~~F-~s~e~l~~Y~ 51 (82)
+++||+.+.+.+ .|.++++.+.
T Consensus 102 tG~~d~~~~v~~~~d~~~l~~~~ 124 (151)
T 2dbb_A 102 VGRYNIIVRLLLPKDIKDAENLI 124 (151)
T ss_dssp ESSCSEEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEEEcCCHHHHHHHH
Confidence 467999999999 9999998765
No 59
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=66.46 E-value=14 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred CCCeeEEEEEEECCHhhHHhhh
Q 034816 30 HQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 30 ~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
++.||+.+.+.++|.++++.+.
T Consensus 98 tG~~d~~~~v~~~~~~~l~~~~ 119 (144)
T 2cfx_A 98 AGAACYMLKINAESLEAVEDFI 119 (144)
T ss_dssp ESSSSEEEEEEESSHHHHHHHH
T ss_pred eCCCCEEEEEEECCHHHHHHHH
Confidence 4579999999999999999876
No 60
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=58.83 E-value=16 Score=21.42 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=20.0
Q ss_pred cCCCeeEEEEEEECCHhhHHhhh
Q 034816 29 LHQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
.+++||+.+.+.+.|.++++.+.
T Consensus 96 ~~G~~d~~~~v~~~d~~~l~~~~ 118 (141)
T 1i1g_A 96 SSGDHMIMAVIWAKDGEDLAEII 118 (141)
T ss_dssp CSSSSSEEEEEEESSHHHHHHHH
T ss_pred ecCCCCEEEEEEECCHHHHHHHH
Confidence 35679999999999999998776
No 61
>3a16_A Oxdre, aldoxime dehydratase; beta barrel, heme protein, lyase; HET: HEM; 1.60A {Rhodococcus erythropolis} PDB: 3a15_A* 3a17_A* 3a18_A*
Probab=55.06 E-value=17 Score=26.34 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=37.7
Q ss_pred HHHHhhcccc-------cceEEeceeCCccc--cCCCeeEEEEEEECCHhhHHhhhc-ChhHHHHHHHHhhhh
Q 034816 5 LIRSCCGLEL-------LAVKYKGKNVSIEN--LHQGFTHIFESTFESTEGVAEYVA-HPAHVEYANLFLANL 67 (82)
Q Consensus 5 ~~~~l~~L~~-------~~~~~~G~~~~~e~--~~~gy~~~l~~~F~s~e~l~~Y~~-hP~H~~~~~~~~~~~ 67 (82)
+.+++..|.+ .+..+ -.+...++ .++.|.. .-|.|.++|+.... ||.|+++-..+....
T Consensus 262 L~~Gm~fLrd~g~~~Gc~s~R~-~~~~D~~g~~~~~t~~l---gyf~dL~~LErWaksHpTHl~If~~fm~~~ 330 (373)
T 3a16_A 262 LQSGMDFLRDNGPAVGCYSNRF-VRNIDIDGNFLDLSYNI---GHWASLDQLERWSESHPTHLRIFTTFFRVA 330 (373)
T ss_dssp HHHHHHHHHHSHHHHTEEEEEE-EEEECTTSCEEEEEEEE---EEESCHHHHHHHHHHSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCccCceEeeee-eEeecCCCCeecceeee---eeecCHHHHHHHHhcCchHHHHHHHHHHHh
Confidence 3445555555 55555 55554322 1334443 45999999999997 999999998444444
No 62
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=46.91 E-value=18 Score=20.70 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhh----ceEEEEeecceeeC
Q 034816 57 VEYANLFLANLE----KVLVIDYKPTTVRV 82 (82)
Q Consensus 57 ~~~~~~~~~~~~----~~~v~D~~~~~~~~ 82 (82)
+++++.++|.+. ++-.+|++.|+|+|
T Consensus 13 ~~~L~~IRP~L~~dGGdvelv~v~~g~V~V 42 (88)
T 1xhj_A 13 AEVIERLRPFLLRDGGDCTLVDVEDGIVKL 42 (88)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCSSEEEE
T ss_pred HHHHHHhcHHHHhcCCeEEEEEEECCEEEE
Confidence 344556889886 48889999998875
No 63
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=46.62 E-value=34 Score=20.31 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=20.1
Q ss_pred cCCCeeEEEEEEECCHhhHHhhh
Q 034816 29 LHQGFTHIFESTFESTEGVAEYV 51 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~ 51 (82)
.++.||+.+.+..+|.++++.+.
T Consensus 100 ~~G~~d~~~~v~~~~~~~l~~~l 122 (150)
T 2w25_A 100 VAGEASYVLLVRVASARALEDLL 122 (150)
T ss_dssp ESSSCSEEEEEEESSHHHHHHHH
T ss_pred eECCCCEEEEEEECCHHHHHHHH
Confidence 34679999999999999998876
No 64
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=44.68 E-value=57 Score=20.60 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=28.9
Q ss_pred cceEEeceeCCccccCCCeeEEEEEEECCHhhHHhhhcChhHHHHH
Q 034816 15 LAVKYKGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYA 60 (82)
Q Consensus 15 ~~~~~~G~~~~~e~~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~ 60 (82)
+++.. =++.. +=++.+++.++|.++++++...++.++.-
T Consensus 101 ~~f~L-Lr~~~------~~~y~v~T~Wes~e~Fe~W~~S~aFr~aH 139 (167)
T 4ae5_A 101 KSYRL-LRPAK------GTTYKIYFGFADRHAYEDFKQSDAFNDHF 139 (167)
T ss_dssp EEEEE-EEESS------SSCEEEEEEESSHHHHHHHHHSHHHHTTT
T ss_pred EEEEE-eecCC------CCcEEEEEEECCHHHHHHHhcCHHHHHHh
Confidence 67776 55432 23578889999999999999988665544
No 65
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=35.44 E-value=63 Score=18.76 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=29.9
Q ss_pred eeEEEEEEECCHhhHHhhh----cChhHHHHHHHHhhhhhc
Q 034816 33 FTHIFESTFESTEGVAEYV----AHPAHVEYANLFLANLEK 69 (82)
Q Consensus 33 y~~~l~~~F~s~e~l~~Y~----~hP~H~~~~~~~~~~~~~ 69 (82)
..+..+-.|+|.++++.+. .+|.=+++.....|++.+
T Consensus 61 n~v~~Lw~y~sl~~r~~~r~a~~~dp~W~~~~~~~~~lI~~ 101 (116)
T 1vqs_A 61 NEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEV 101 (116)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHHHCHHHHHHTHHHHTTEEE
T ss_pred cEEEEEEecCCHHHHHHHHHHHhcCCchHHHHHHhhhheee
Confidence 3688899999999999877 489888887777777654
No 66
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=32.49 E-value=17 Score=24.29 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=16.7
Q ss_pred ECCHhhHHhhhcChhHHHHH-HHHhhh
Q 034816 41 FESTEGVAEYVAHPAHVEYA-NLFLAN 66 (82)
Q Consensus 41 F~s~e~l~~Y~~hP~H~~~~-~~~~~~ 66 (82)
|.|.+.|. .||+|.++- .++...
T Consensus 5 Fqsl~~Lk---~rPAHLaVFL~yV~sq 28 (211)
T 1iap_A 5 FQSLEQVK---RRPAHLMALLQHVALQ 28 (211)
T ss_dssp TSCHHHHT---TCHHHHHHHHHHHHHH
T ss_pred ccCHHHHh---hccHHHHHHHHHHHHc
Confidence 77888887 699999864 455433
No 67
>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.40A {Agrobacterium tumefaciens str} SCOP: d.58.4.13
Probab=29.93 E-value=84 Score=18.17 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=29.8
Q ss_pred eeEEEEEEECCHhhHHhhh----cChhHHHHHHHHhhhhhc
Q 034816 33 FTHIFESTFESTEGVAEYV----AHPAHVEYANLFLANLEK 69 (82)
Q Consensus 33 y~~~l~~~F~s~e~l~~Y~----~hP~H~~~~~~~~~~~~~ 69 (82)
..+..+-.|+|.++++.+. .+|.=+++.....|++.+
T Consensus 61 n~v~~Lw~y~sl~~r~~~r~a~~~dp~W~~~~~~~~~lI~~ 101 (116)
T 1vqy_A 61 SQVIHMWGYASLDDRAERRGKLAEDQRWQAFIPRLSVLIES 101 (116)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHHTCHHHHHHHHHHHTTEEE
T ss_pred cEEEEEEecCCHHHHHHHHHHHhcCCchHHHHHHhhcceee
Confidence 3588889999999998776 489888887777777654
No 68
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=29.62 E-value=18 Score=24.10 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=15.7
Q ss_pred ECCHhhHHhhhcChhHHHHH-HHHh
Q 034816 41 FESTEGVAEYVAHPAHVEYA-NLFL 64 (82)
Q Consensus 41 F~s~e~l~~Y~~hP~H~~~~-~~~~ 64 (82)
|.|.+.|+ .||+|.++- .++.
T Consensus 23 F~sle~Lk---~rPAHLavFL~yvl 44 (203)
T 3cx8_B 23 FQDLEKLK---SHPAYLVVFLRYIL 44 (203)
T ss_dssp HHCHHHHH---TCHHHHHHHHHHHH
T ss_pred ccCHHHHh---cCcHHHHHHHHHHH
Confidence 77888777 699999864 4543
No 69
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=26.68 E-value=21 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=17.4
Q ss_pred EEEECCHhhHHhhhcChhHHHHH-HHHhhh
Q 034816 38 ESTFESTEGVAEYVAHPAHVEYA-NLFLAN 66 (82)
Q Consensus 38 ~~~F~s~e~l~~Y~~hP~H~~~~-~~~~~~ 66 (82)
..-|.|.+.|+ .||+|.++- .++...
T Consensus 56 ~g~Fqsle~Lk---~rPAHLaVFL~yV~sq 82 (246)
T 3ab3_B 56 NSQFQSLEQVK---RRPAHLMALLQHVALQ 82 (246)
T ss_dssp ---CCSGGGTT---TCHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHh---ccchHHHHHHHHHHhc
Confidence 36699999988 599999865 455443
No 70
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=21.35 E-value=1.3e+02 Score=20.30 Aligned_cols=38 Identities=16% Similarity=-0.123 Sum_probs=27.8
Q ss_pred cCCCeeEEEEEEECCHhhHHhhhcChhHHHHHHHHhhhhhceEEE
Q 034816 29 LHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVI 73 (82)
Q Consensus 29 ~~~gy~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~~v~ 73 (82)
..+.|+|.|.++|++. .+|.-++..+.++.....+.++
T Consensus 226 ~~~~~~Y~FfiD~e~~-------~d~~v~~aL~~L~~~~~~~kiL 263 (267)
T 2qmw_A 226 KTQLGMYRFFVQADSA-------ITTDIKKVIAILETLDFKVEMI 263 (267)
T ss_dssp SSSTTCEEEEEEESCC-------SCHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCccEEEEEEEecC-------CcHHHHHHHHHHHHhcCeEEEE
Confidence 3456999999999843 4577788888888777665544
No 71
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=21.07 E-value=69 Score=18.32 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=20.2
Q ss_pred HHHHHH-HHhhhhh----ceEEEEeecceeeC
Q 034816 56 HVEYAN-LFLANLE----KVLVIDYKPTTVRV 82 (82)
Q Consensus 56 H~~~~~-~~~~~~~----~~~v~D~~~~~~~~ 82 (82)
-+++++ .++|.+. ++-.+|++.|+|+|
T Consensus 18 I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v 49 (92)
T 1veh_A 18 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRL 49 (92)
T ss_dssp HHHHHHHTTHHHHHHHSCCCCEEEEETTEEEE
T ss_pred HHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEE
Confidence 445555 5888886 48889999998875
Done!