BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034819
         (82 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p
          Length = 83

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 2  SYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIED 61
          +YD++EIEDM +  E Q +TYPCPCGD FQI  D++  GE++A CPSCSL I V+++ ED
Sbjct: 4  TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKED 63

Query: 62 FLDNKSKEKLEPSKQQPVAVA 82
            +   +  + P   +P+A A
Sbjct: 64 LAEYYEEAGIHPP--EPIAAA 82


>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces
          Cerevisiae
          Length = 82

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 2  SYDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIED 61
          +YD++EIEDM +  E Q +TYPCPCGD FQI  D++  GE++A CPSCSL I V+++ ED
Sbjct: 3  TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKED 62

Query: 62 FLDNKSKEKLEPSKQQPVAVA 82
            +   +  + P   +P+A A
Sbjct: 63 LAEYYEEAGIHPP--EPIAAA 81


>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1
          Length = 89

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 50/65 (76%)

Query: 3  YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDF 62
          +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F
Sbjct: 5  HDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64

Query: 63 LDNKS 67
          +  ++
Sbjct: 65 VSGET 69


>pdb|1WGE|A Chain A, Solution Structure Of The Mouse Desr1
          Length = 83

 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 3  YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIARCPSCSLYITVIYNIEDF 62
          +D+VEIED +++E+ + Y YPCPCGD F ITK++L  GE++A CPSCSL I VIY+ + F
Sbjct: 12 HDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQF 71

Query: 63 L 63
          +
Sbjct: 72 M 72


>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
          Length = 155

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 6   VEIEDMEWNEELQAYTYPCPCGDLFQITKDELRIGEEIA--RCPSCSLYITVIY 57
           V +E+M WNE   ++   C CG  + ++KDE    EE++   C +CSL I +++
Sbjct: 97  VYLEEMSWNEGDHSFYLSCRCGGKYSVSKDE---AEEVSLISCDTCSLIIELLH 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,643,144
Number of Sequences: 62578
Number of extensions: 91998
Number of successful extensions: 177
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 5
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)