BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034822
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4
PE=2 SV=1
Length = 480
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLL 67
ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT L + +
Sbjct: 45 ELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVTKTI 104
Query: 68 HFLFLVEKLKP 78
+ ++P
Sbjct: 105 RKFSIDSNMRP 115
>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp.
japonica GN=PDIL5-4 PE=2 SV=1
Length = 485
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/63 (66%), Positives = 52/63 (82%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
MV EL+NYL V TST+VIVD+S+DG+FLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MVFLFGMELSNYLAVNTSTSVIVDRSSDGEFLRIDFNLSFPALSCEFASVDVSDVLGTNR 97
Query: 61 LGL 63
L +
Sbjct: 98 LNI 100
>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3
PE=2 SV=1
Length = 483
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 50/56 (89%)
Query: 8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGL 63
EL++YL V T+TAVIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT L +
Sbjct: 45 ELSSYLEVNTTTAVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSDVLGTNRLNI 100
>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Danio rerio GN=ergic3 PE=2 SV=1
Length = 383
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
M+ EL YLT + VD S GD LRI+ ++ FP +PC + SID +V G
Sbjct: 38 MLILFFSELQYYLTKEVHPELFVDTSR-GDKLRINIDVIFPHMPCAYLSIDAMDVAGEQQ 96
Query: 61 L 61
L
Sbjct: 97 L 97
>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus laevis GN=ergic3 PE=2 SV=1
Length = 389
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
M+ EL YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 38 MLILFFSELQYYLTKEVYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQ 96
Query: 61 L 61
L
Sbjct: 97 L 97
>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1
Length = 384
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
M+ EL YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 38 MLILFFSELQYYLTKEIYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQ 96
Query: 61 L 61
L
Sbjct: 97 L 97
>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1
Length = 390
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
++ +L E NY V +IV+ S GD + I+FN++FP +PC+ ++DV +V G
Sbjct: 38 VIFIVLMEWINYRRVIAVHEIIVNPS-HGDRMEINFNITFPRIPCQILTVDVLDVSG 93
>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Bos taurus GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
YLT + VDKS GD L+I+ N+ FP +PC + SID +V G L
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKININVLFPHMPCAYLSIDAMDVAGEQQL 97
>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Pongo abelii GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G L
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQL 97
>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Mus musculus GN=Ergic3 PE=2 SV=1
Length = 383
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G L
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQL 97
>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G L
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQL 97
>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Homo sapiens GN=ERGIC3 PE=1 SV=1
Length = 383
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G L
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQL 97
>sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2
Length = 415
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 4 FILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGL 63
++ E + +V T ++VD+ L ++ +++FPS+PC+ ++D+ + G + L +
Sbjct: 40 LLVNEWGQFNSVVTRPQLVVDRDRHAK-LELNMDVTFPSMPCDLVNLDIMDDSGEMQLDI 98
Query: 64 L 64
L
Sbjct: 99 L 99
>sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Mus musculus GN=Ergic1 PE=1 SV=1
Length = 290
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 4 FILQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
L EL ++T + VD G + + N+S P+L CE +D+ + +G +
Sbjct: 39 LFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEV 98
Query: 62 G 62
G
Sbjct: 99 G 99
>sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Homo sapiens GN=ERGIC1 PE=1 SV=1
Length = 290
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 4 FILQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
L EL ++T + VD G + + N+S P+L CE +D+ + +G +
Sbjct: 39 LFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEV 98
Query: 62 G 62
G
Sbjct: 99 G 99
>sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Xenopus laevis GN=ergic1 PE=2 SV=1
Length = 290
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 2 VTFI-LQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
+TF+ L EL ++ + VD G + + N++ P+LPCE +D+ + +G
Sbjct: 36 ITFLFLSELTGFIANEIVNELYVDDPDKDSGGKIDVTLNVTLPNLPCEVVGLDIQDEMGR 95
Query: 59 VSLG 62
+G
Sbjct: 96 HEVG 99
>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment
protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3
SV=1
Length = 383
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
Y + + VD +T G+ L+I+ +++F LPC + S+D +V G
Sbjct: 48 YFSTDIHHELFVD-TTRGEKLKINMDITFHHLPCAYLSLDAMDVSG 92
>sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Danio rerio GN=ergic1 PE=2 SV=1
Length = 290
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
M+ L EL ++ + VD G + + N+S P+L C+ +D+ + +G
Sbjct: 36 MLFLFLSELTGFIATEIVNELYVDDPDKDSGGKIDVSLNISLPNLHCDLVGLDIQDEMGR 95
Query: 59 VSLG 62
+G
Sbjct: 96 HEVG 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,412,684
Number of Sequences: 539616
Number of extensions: 827100
Number of successful extensions: 2208
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2185
Number of HSP's gapped (non-prelim): 20
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)