Query 034822
Match_columns 82
No_of_seqs 105 out of 386
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13850 ERGIC_N: Endoplasmic 99.9 2.6E-24 5.6E-29 132.9 4.3 64 1-65 33-96 (96)
2 KOG2667 COPII vesicle protein 99.9 2.1E-22 4.5E-27 148.6 2.5 73 1-74 38-110 (379)
3 PF10636 hemP: Hemin uptake pr 67.8 7.2 0.00016 20.2 2.4 24 57-80 13-36 (38)
4 KOG3111 D-ribulose-5-phosphate 56.6 6.8 0.00015 27.6 1.3 20 42-63 28-47 (224)
5 PRK10183 hypothetical protein; 43.8 27 0.00058 19.6 2.2 31 50-80 21-54 (56)
6 PF11931 DUF3449: Domain of un 32.2 15 0.00033 25.5 0.0 16 64-79 73-88 (196)
7 PF12544 LAM_C: Lysine-2,3-ami 27.3 88 0.0019 20.3 2.9 33 8-40 3-35 (127)
8 PF04525 Tub_2: Tubby C 2; In 26.6 44 0.00096 22.1 1.5 32 49-80 29-66 (187)
9 PF13944 Lipocalin_6: Lipocali 26.3 81 0.0018 19.8 2.6 18 29-46 102-119 (125)
10 PF00834 Ribul_P_3_epim: Ribul 26.3 41 0.00089 23.0 1.3 17 44-62 25-41 (201)
11 PRK08883 ribulose-phosphate 3- 25.7 35 0.00075 23.6 0.9 18 43-62 24-41 (220)
12 PF14524 Wzt_C: Wzt C-terminal 24.6 1.7E+02 0.0036 17.5 4.4 35 29-63 34-69 (142)
13 PRK09722 allulose-6-phosphate 24.5 37 0.00081 23.8 0.9 18 44-63 27-44 (229)
14 PRK08745 ribulose-phosphate 3- 23.4 41 0.00089 23.4 0.9 19 43-63 28-46 (223)
15 PF09458 H_lectin: H-type lect 23.0 79 0.0017 17.3 1.9 25 30-54 3-27 (72)
16 COG1532 Predicted RNA-binding 22.9 1.5E+02 0.0033 16.5 3.2 30 49-81 26-55 (57)
17 PRK08005 epimerase; Validated 21.9 44 0.00096 23.1 0.8 18 43-62 25-42 (210)
18 PTZ00170 D-ribulose-5-phosphat 21.4 46 0.001 23.0 0.8 19 43-63 31-49 (228)
No 1
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=99.90 E-value=2.6e-24 Score=132.87 Aligned_cols=64 Identities=34% Similarity=0.711 Sum_probs=61.0
Q ss_pred CEEEehhhhhhccccceEEEEEEccCCCCceEEEEEeEEecccccceeeeeeeecCCceeeCccc
Q 034822 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLM 65 (82)
Q Consensus 1 ~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~~l~In~dItfp~~pC~~l~vDv~D~~G~~~~~v~~ 65 (82)
|++|+++|+.+|+++++++++.||++++ ++++||+|||||+|||++|++|++|++|+++.|++|
T Consensus 33 ~~~L~~~E~~~y~~~~~~~~~~VD~~~~-~~l~in~ditf~~~pC~~l~vDv~D~~G~~~~dv~h 96 (96)
T PF13850_consen 33 IVILFISELYSYLSGEIKYQLVVDTSRD-EKLQINFDITFPHMPCDFLSVDVQDASGDHQLDVTH 96 (96)
T ss_pred HHHHHHHHHHHHcccceeEEEEEcCCCC-ceEEEEEEEEECCCccCeeeeEeEccCCCeeccccC
Confidence 3578999999999999999999999888 999999999999999999999999999999999876
No 2
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.1e-22 Score=148.57 Aligned_cols=73 Identities=40% Similarity=0.670 Sum_probs=70.7
Q ss_pred CEEEehhhhhhccccceEEEEEEccCCCCceEEEEEeEEecccccceeeeeeeecCCceeeCccccEEEEeccC
Q 034822 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVE 74 (82)
Q Consensus 1 ~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~~l~In~dItfp~~pC~~l~vDv~D~~G~~~~~v~~~i~k~rld~ 74 (82)
|++|+++|+..|+.+...++++||.+++ ++++||||||||+|||++++||++|.+|+++.++.+.|+|.|+++
T Consensus 38 i~~L~~~E~~~y~~~~~~~~~~vd~s~~-e~l~in~DItfp~lpC~~lsVDv~D~sg~~~l~i~~~i~k~rl~~ 110 (379)
T KOG2667|consen 38 ILFLFFMELSQYLSVITSTELFVDDSRD-EKLQINFDITFPALPCSILSVDVMDVSGEMVLDIDHLIYKLRLDP 110 (379)
T ss_pred HHHHHHHHHHHHhhhcceeEEEEeCCCC-ceeeeeeeEEeccCccceEEEEeeccccccccchhhhhhhcccCc
Confidence 4679999999999999999999999997 999999999999999999999999999999999999999999998
No 3
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=67.76 E-value=7.2 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=19.3
Q ss_pred CceeeCccccEEEEeccCCCeEEE
Q 034822 57 GTVSLGLLMLLHFLFLVEKLKPIL 80 (82)
Q Consensus 57 G~~~~~v~~~i~k~rld~~g~~i~ 80 (82)
++-...-.+..+..|+..+||.||
T Consensus 13 ~ev~I~H~g~~Y~LR~Tr~gKLIL 36 (38)
T PF10636_consen 13 REVRIEHGGQIYRLRITRQGKLIL 36 (38)
T ss_dssp SEEEEEETTEEEEEEEETTTEEEE
T ss_pred CEEEEEeCCeEEEeeEccCCcEEE
Confidence 344445578999999999999997
No 4
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=56.59 E-value=6.8 Score=27.56 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=15.2
Q ss_pred ccccceeeeeeeecCCceeeCc
Q 034822 42 SLPCEFASIDVSNVLGTVSLGL 63 (82)
Q Consensus 42 ~~pC~~l~vDv~D~~G~~~~~v 63 (82)
+.-|++||+||+| |.-..|+
T Consensus 28 ~~GadwlHlDVMD--g~FVpNi 47 (224)
T KOG3111|consen 28 DAGADWLHLDVMD--GHFVPNI 47 (224)
T ss_pred HcCCCeEEEeeec--ccccCCc
Confidence 3468999999999 6655554
No 5
>PRK10183 hypothetical protein; Provisional
Probab=43.79 E-value=27 Score=19.58 Aligned_cols=31 Identities=23% Similarity=0.115 Sum_probs=21.9
Q ss_pred eeeeecCC---ceeeCccccEEEEeccCCCeEEE
Q 034822 50 IDVSNVLG---TVSLGLLMLLHFLFLVEKLKPIL 80 (82)
Q Consensus 50 vDv~D~~G---~~~~~v~~~i~k~rld~~g~~i~ 80 (82)
+|..+..| +-.+.-.+..+..|+...||.||
T Consensus 21 i~S~~Ll~g~~~v~I~H~G~~Y~LR~Tr~GKLIL 54 (56)
T PRK10183 21 ISSQTLLGPDGKVIIDHDGQEYLLRKTQAGKLLL 54 (56)
T ss_pred ECHHHHhCCCCEEEEEECCcEEEeEEccCCceEe
Confidence 34444443 33344578999999999999997
No 6
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=32.19 E-value=15 Score=25.45 Aligned_cols=16 Identities=31% Similarity=-0.002 Sum_probs=0.0
Q ss_pred cccEEEEeccCCCeEE
Q 034822 64 LMLLHFLFLVEKLKPI 79 (82)
Q Consensus 64 ~~~i~k~rld~~g~~i 79 (82)
..+-.+++|+.||+||
T Consensus 73 ~~np~~lPLG~DGkPI 88 (196)
T PF11931_consen 73 IYNPLNLPLGWDGKPI 88 (196)
T ss_dssp ----------------
T ss_pred cCCcccCCCCCCCCcc
Confidence 4566899999999998
No 7
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=27.32 E-value=88 Score=20.32 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=19.7
Q ss_pred hhhhccccceEEEEEEccCCCCceEEEEEeEEe
Q 034822 8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSF 40 (82)
Q Consensus 8 E~~~y~~~~~~~~l~VD~~~~~~~l~In~dItf 40 (82)
.++.++++-....++||...++.|+.+.-|.-.
T Consensus 3 ~LRGhtSGlAvPtyVvD~PGGgGKvPl~P~Yli 35 (127)
T PF12544_consen 3 SLRGHTSGLAVPTYVVDAPGGGGKVPLMPNYLI 35 (127)
T ss_dssp TTCTTC-GGG--EEEEEETTTTEEEE-----EE
T ss_pred cccccccccccceEEEECCCCCCCcccCCceEE
Confidence 467788888899999999988787766555433
No 8
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=26.56 E-value=44 Score=22.09 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=13.3
Q ss_pred eeeeeecCCceeeCccc----cEE--EEeccCCCeEEE
Q 034822 49 SIDVSNVLGTVSLGLLM----LLH--FLFLVEKLKPIL 80 (82)
Q Consensus 49 ~vDv~D~~G~~~~~v~~----~i~--k~rld~~g~~i~ 80 (82)
+.+|.|..|+..+-+.+ .+. +.=+|.+|+|++
T Consensus 29 ~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~ 66 (187)
T PF04525_consen 29 DFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLF 66 (187)
T ss_dssp -EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEE
T ss_pred CEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEE
Confidence 34566666665555544 111 122366666654
No 9
>PF13944 Lipocalin_6: Lipocalin-like domain; PDB: 3RWX_A.
Probab=26.32 E-value=81 Score=19.80 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=13.5
Q ss_pred CceEEEEEeEEecccccc
Q 034822 29 GDFLRIDFNMSFPSLPCE 46 (82)
Q Consensus 29 ~~~l~In~dItfp~~pC~ 46 (82)
+.++.+++++.++.||-.
T Consensus 102 dgkl~~~i~v~~~~m~~~ 119 (125)
T PF13944_consen 102 DGKLTITIDVKVGGMPMT 119 (125)
T ss_dssp TTEEEEEEEEEETT-SS-
T ss_pred CCEEEEEEEEEeCCcceE
Confidence 478999999999887744
No 10
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.26 E-value=41 Score=23.00 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=11.8
Q ss_pred ccceeeeeeeecCCceeeC
Q 034822 44 PCEFASIDVSNVLGTVSLG 62 (82)
Q Consensus 44 pC~~l~vDv~D~~G~~~~~ 62 (82)
-|+++|+|++| |.-.-|
T Consensus 25 g~d~lHiDiMD--g~fvpn 41 (201)
T PF00834_consen 25 GADWLHIDIMD--GHFVPN 41 (201)
T ss_dssp T-SEEEEEEEB--SSSSSS
T ss_pred CCCEEEEeecc--cccCCc
Confidence 47899999999 544333
No 11
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.69 E-value=35 Score=23.64 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=13.9
Q ss_pred cccceeeeeeeecCCceeeC
Q 034822 43 LPCEFASIDVSNVLGTVSLG 62 (82)
Q Consensus 43 ~pC~~l~vDv~D~~G~~~~~ 62 (82)
..|+++|+|++| |.-.-|
T Consensus 24 ~g~~~lH~DvmD--G~Fvpn 41 (220)
T PRK08883 24 AGADVVHFDVMD--NHYVPN 41 (220)
T ss_pred cCCCEEEEeccc--CcccCc
Confidence 468999999999 555444
No 12
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=24.61 E-value=1.7e+02 Score=17.53 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=25.9
Q ss_pred CceEEEEEeEEe-cccccceeeeeeeecCCceeeCc
Q 034822 29 GDFLRIDFNMSF-PSLPCEFASIDVSNVLGTVSLGL 63 (82)
Q Consensus 29 ~~~l~In~dItf-p~~pC~~l~vDv~D~~G~~~~~v 63 (82)
++++.|.+++.+ ..++.-.+++.+.|..|......
T Consensus 34 ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~ 69 (142)
T PF14524_consen 34 GEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGT 69 (142)
T ss_dssp TSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEE
T ss_pred CCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEE
Confidence 488999999998 56666778999999999877754
No 13
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.51 E-value=37 Score=23.81 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=13.8
Q ss_pred ccceeeeeeeecCCceeeCc
Q 034822 44 PCEFASIDVSNVLGTVSLGL 63 (82)
Q Consensus 44 pC~~l~vDv~D~~G~~~~~v 63 (82)
.|+++|+|++| |.-.-|+
T Consensus 27 g~d~lH~DiMD--G~FVPN~ 44 (229)
T PRK09722 27 KADYFHIDIMD--GHFVPNL 44 (229)
T ss_pred CCCEEEEeccc--CccCCCc
Confidence 58999999999 6555543
No 14
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.42 E-value=41 Score=23.44 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=14.1
Q ss_pred cccceeeeeeeecCCceeeCc
Q 034822 43 LPCEFASIDVSNVLGTVSLGL 63 (82)
Q Consensus 43 ~pC~~l~vDv~D~~G~~~~~v 63 (82)
..++++|+|++| |.-.-|+
T Consensus 28 ~g~d~lHiDimD--G~FVPN~ 46 (223)
T PRK08745 28 AGADWVHFDVMD--NHYVPNL 46 (223)
T ss_pred cCCCEEEEeccc--CccCCCc
Confidence 468899999999 6554443
No 15
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=23.01 E-value=79 Score=17.34 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=17.1
Q ss_pred ceEEEEEeEEecccccceeeeeeee
Q 034822 30 DFLRIDFNMSFPSLPCEFASIDVSN 54 (82)
Q Consensus 30 ~~l~In~dItfp~~pC~~l~vDv~D 54 (82)
...+|.|+-.|.+.|.=++++.-.|
T Consensus 3 ~~~~I~F~~~F~~~P~V~~~i~~~d 27 (72)
T PF09458_consen 3 YSQTITFSKPFSSPPQVIVSINGLD 27 (72)
T ss_dssp EEEEEE-SS--SS--EEEEEEEEEE
T ss_pred eEEEeEcChhcCCCCEEEEEEEEEE
Confidence 3578999999999999999999888
No 16
>COG1532 Predicted RNA-binding protein [General function prediction only]
Probab=22.92 E-value=1.5e+02 Score=16.52 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=17.3
Q ss_pred eeeeeecCCceeeCccccEEEEeccCCCeEEEe
Q 034822 49 SIDVSNVLGTVSLGLLMLLHFLFLVEKLKPILL 81 (82)
Q Consensus 49 ~vDv~D~~G~~~~~v~~~i~k~rld~~g~~i~~ 81 (82)
.+-+.|..|+.+. +.+.++ |+|-+++.|.|
T Consensus 26 ~V~a~Dilgd~ke-~~G~vk--riDldehkI~l 55 (57)
T COG1532 26 GVVARDILGDEKE-FEGQVK--RIDLDEHKIEL 55 (57)
T ss_pred cEEEEeccCCceE-ecceEE--EEEccccEEEe
Confidence 3456778888644 344444 55556666554
No 17
>PRK08005 epimerase; Validated
Probab=21.92 E-value=44 Score=23.12 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=13.5
Q ss_pred cccceeeeeeeecCCceeeC
Q 034822 43 LPCEFASIDVSNVLGTVSLG 62 (82)
Q Consensus 43 ~pC~~l~vDv~D~~G~~~~~ 62 (82)
..++++|+|++| |.-.-|
T Consensus 25 ~g~d~lHiDvMD--G~FVPN 42 (210)
T PRK08005 25 APLGSLHLDIED--TSFINN 42 (210)
T ss_pred CCCCEEEEeccC--CCcCCc
Confidence 468899999999 554444
No 18
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=21.35 E-value=46 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=14.4
Q ss_pred cccceeeeeeeecCCceeeCc
Q 034822 43 LPCEFASIDVSNVLGTVSLGL 63 (82)
Q Consensus 43 ~pC~~l~vDv~D~~G~~~~~v 63 (82)
..|+++|+|++| |.-.-|.
T Consensus 31 ~~~~~~H~DimD--g~fvpn~ 49 (228)
T PTZ00170 31 GGADWLHVDVMD--GHFVPNL 49 (228)
T ss_pred cCCCEEEEeccc--CccCCCc
Confidence 468899999999 6655553
Done!