Query 034822
Match_columns 82
No_of_seqs 105 out of 386
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loj_A Putative cytoplasmic pr 48.0 16 0.00054 20.1 2.6 31 50-80 28-61 (63)
2 2jra_A Protein RPA2121; domain 47.1 19 0.00065 20.1 2.8 23 58-80 43-65 (67)
3 1brv_A Protein G, BRSV-G regio 31.5 11 0.00039 18.0 0.2 10 39-48 10-19 (32)
4 3gm8_A Glycoside hydrolase fam 22.5 2E+02 0.0067 22.7 5.8 69 11-80 672-743 (801)
5 2ccv_A Helix pomatia agglutini 17.1 1.7E+02 0.0057 16.9 3.7 30 30-59 31-60 (101)
6 2hxj_A Hypothetical protein; A 17.0 70 0.0024 20.2 1.9 13 70-82 89-101 (144)
7 3mw6_A Uncharacterized protein 15.4 82 0.0028 19.8 1.9 13 70-82 89-101 (144)
8 3ctl_A D-allulose-6-phosphate 13.2 69 0.0024 21.2 1.1 12 43-54 24-35 (231)
9 2nwi_A Hypothetical protein; s 13.2 91 0.0031 18.7 1.6 15 67-81 138-152 (172)
10 1tqx_A D-ribulose-5-phosphate 13.0 79 0.0027 20.9 1.4 11 44-54 31-41 (227)
No 1
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=48.04 E-value=16 Score=20.14 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=22.7
Q ss_pred eeeeecCC---ceeeCccccEEEEeccCCCeEEE
Q 034822 50 IDVSNVLG---TVSLGLLMLLHFLFLVEKLKPIL 80 (82)
Q Consensus 50 vDv~D~~G---~~~~~v~~~i~k~rld~~g~~i~ 80 (82)
+|..+..| +-.+.-.+..+..|+...||.||
T Consensus 28 i~S~~Ll~g~~~v~I~H~G~~Y~LR~Tr~GKLIL 61 (63)
T 2loj_A 28 VNSQALLGPDGKVIIDHNGQEYLLRKTQAGKLLL 61 (63)
T ss_dssp EEGGGSSTTTCEEEEEETTEEEEEEEETTTEEEE
T ss_pred EcHHHHhCCCCEEEEEeCCeEEEeEEccCCceee
Confidence 45555444 33444578999999999999998
No 2
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=47.11 E-value=19 Score=20.07 Aligned_cols=23 Identities=22% Similarity=-0.044 Sum_probs=19.0
Q ss_pred ceeeCccccEEEEeccCCCeEEE
Q 034822 58 TVSLGLLMLLHFLFLVEKLKPIL 80 (82)
Q Consensus 58 ~~~~~v~~~i~k~rld~~g~~i~ 80 (82)
+-.+...+..+..|+...||.||
T Consensus 43 ev~I~H~G~~Y~LR~Tr~GKLIL 65 (67)
T 2jra_A 43 EIVIAHGDDRYRLRLTSQNKLIL 65 (67)
T ss_dssp EEEEEETTEEEEEEECTTSCEEE
T ss_pred EEEEEeCCeEEEeEEccCCceee
Confidence 34445578999999999999998
No 3
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=31.49 E-value=11 Score=18.00 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=7.9
Q ss_pred Eeccccccee
Q 034822 39 SFPSLPCEFA 48 (82)
Q Consensus 39 tfp~~pC~~l 48 (82)
+||..||+.-
T Consensus 10 ~l~~VPCsiC 19 (32)
T 1brv_A 10 TLPYVPCSTC 19 (32)
T ss_pred cccccccccc
Confidence 5899999763
No 4
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}
Probab=22.46 E-value=2e+02 Score=22.66 Aligned_cols=69 Identities=10% Similarity=-0.074 Sum_probs=41.6
Q ss_pred hccccceEEEEEEccCCCCceEEEEEeEEecc---cccceeeeeeeecCCceeeCccccEEEEeccCCCeEEE
Q 034822 11 NYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPS---LPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPIL 80 (82)
Q Consensus 11 ~y~~~~~~~~l~VD~~~~~~~l~In~dItfp~---~pC~~l~vDv~D~~G~~~~~v~~~i~k~rld~~g~~i~ 80 (82)
.|-+++...+-.+-+.....+|++..|=+-.. .-..++.+.+.|.-|....+..+.|+.. +.-.|+.++
T Consensus 672 ~~~~Gk~v~~~~~~tag~~~~l~l~~d~~~l~adg~Dl~~v~v~v~D~~G~~~p~a~~~v~f~-v~G~g~l~g 743 (801)
T 3gm8_A 672 GIKKGKIVATDCYQSAEAPHSVALASNKYSVKAGSDEVIRIEIDITDKNGIPCPYASNELSFH-VSGPLRLLG 743 (801)
T ss_dssp EEETTEEEEEEEEECCCSEEEEEEEESCSBCCTTSCCCEEEEEEEEETTSCBCTTCCCEEEEE-EESSEEEEE
T ss_pred EEeCCEEEEEEEEecCCCCeEEEEEEccccccCCCceEEEEEEEEEeCCCCCcCCCCCeEEEE-EecCEEEEe
Confidence 34455555444454544445566666632111 1256889999999999887777776654 555555543
No 5
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=17.06 E-value=1.7e+02 Score=16.88 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=25.8
Q ss_pred ceEEEEEeEEecccccceeeeeeeecCCce
Q 034822 30 DFLRIDFNMSFPSLPCEFASIDVSNVLGTV 59 (82)
Q Consensus 30 ~~l~In~dItfp~~pC~~l~vDv~D~~G~~ 59 (82)
....|.|+-.|+..|.-.+++...|.....
T Consensus 31 ~~~~V~F~~~F~~~P~V~v~l~~lD~~~~~ 60 (101)
T 2ccv_A 31 LAKNITFASPYCRPPVVLLSITQLDVEQSQ 60 (101)
T ss_dssp EEEEEECSSCCSSCCEEEEEEEEEEECTTS
T ss_pred EEEEeEeCcccCCCCEEEEEeEEEecCCCc
Confidence 457889999999999999999999987653
No 6
>2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.21A {Neisseria meningitidis MC58} PDB: 3mw6_A
Probab=17.01 E-value=70 Score=20.23 Aligned_cols=13 Identities=8% Similarity=-0.463 Sum_probs=10.5
Q ss_pred EeccCCCeEEEeC
Q 034822 70 LFLVEKLKPILLV 82 (82)
Q Consensus 70 ~rld~~g~~i~~~ 82 (82)
.|+|.+|+|.+-|
T Consensus 89 ~R~DLdG~p~GeV 101 (144)
T 2hxj_A 89 KRFDLNNRFKGEV 101 (144)
T ss_dssp EEECTTSCEEEEC
T ss_pred eeECCCCCCCCcC
Confidence 6889999988754
No 7
>3mw6_A Uncharacterized protein NMB1681; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.21A {Neisseria meningitidis}
Probab=15.35 E-value=82 Score=19.82 Aligned_cols=13 Identities=8% Similarity=-0.463 Sum_probs=10.2
Q ss_pred EeccCCCeEEEeC
Q 034822 70 LFLVEKLKPILLV 82 (82)
Q Consensus 70 ~rld~~g~~i~~~ 82 (82)
.|+|-+|+|.+.|
T Consensus 89 ~R~DLdG~p~g~V 101 (144)
T 3mw6_A 89 KRFDLNNRFKGEV 101 (144)
T ss_dssp EEECTTSCEEEEC
T ss_pred ceECCCCCCCCcC
Confidence 5888899887754
No 8
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=13.19 E-value=69 Score=21.17 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=10.1
Q ss_pred cccceeeeeeee
Q 034822 43 LPCEFASIDVSN 54 (82)
Q Consensus 43 ~pC~~l~vDv~D 54 (82)
.-|+++|+|++|
T Consensus 24 ~gad~lHvDvmD 35 (231)
T 3ctl_A 24 SHADYFHIDIMD 35 (231)
T ss_dssp TTCSCEEEEEEC
T ss_pred cCCCEEEEEEEe
Confidence 457889999998
No 9
>2nwi_A Hypothetical protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: d.190.1.3
Probab=13.18 E-value=91 Score=18.66 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=10.5
Q ss_pred EEEEeccCCCeEEEe
Q 034822 67 LHFLFLVEKLKPILL 81 (82)
Q Consensus 67 i~k~rld~~g~~i~~ 81 (82)
+++..++.+|+|++.
T Consensus 138 ~rr~~~~~~g~pi~y 152 (172)
T 2nwi_A 138 SRNYNIIHRGKVLIN 152 (172)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred eEEEEEEECCEEEEE
Confidence 566667788888763
No 10
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=13.05 E-value=79 Score=20.89 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=9.7
Q ss_pred ccceeeeeeee
Q 034822 44 PCEFASIDVSN 54 (82)
Q Consensus 44 pC~~l~vDv~D 54 (82)
-|+++|+|++|
T Consensus 31 g~d~iHvDvmD 41 (227)
T 1tqx_A 31 GAEWIHLDVMD 41 (227)
T ss_dssp TCSEEEEEEEB
T ss_pred CCCEEEEEEEe
Confidence 48899999998
Done!