Query 034823
Match_columns 82
No_of_seqs 104 out of 330
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00304 Gamma-thionin: Gamma- 99.7 3.4E-18 7.3E-23 96.2 0.9 47 33-82 1-47 (47)
2 smart00505 Knot1 Knottins. Kno 99.0 1.7E-10 3.6E-15 63.4 2.8 44 34-80 1-45 (45)
3 cd00107 Knot1 The "knottin" fo 98.7 1.4E-08 3.1E-13 52.9 2.4 33 44-79 1-33 (33)
4 PF10868 DUF2667: Protein of u 98.2 1.8E-06 4E-11 54.5 3.0 64 12-81 11-80 (90)
5 PF01097 Defensin_2: Arthropod 96.8 0.00056 1.2E-08 36.1 1.0 28 48-79 7-34 (34)
6 PF00537 Toxin_3: Scorpion tox 96.3 0.0018 3.9E-08 37.2 1.1 35 45-80 14-49 (54)
7 PF07333 SLR1-BP: S locus-rela 96.2 0.0041 8.8E-08 35.7 2.2 49 33-82 9-58 (58)
8 PF07127 Nodulin_late: Late no 95.5 0.02 4.3E-07 32.5 3.1 22 44-68 28-49 (54)
9 PF00451 Toxin_2: Scorpion sho 94.5 0.018 3.8E-07 30.0 0.9 31 45-79 2-32 (32)
10 PF14866 Toxin_38: Potassium c 89.8 0.17 3.6E-06 29.5 1.0 28 48-81 28-55 (56)
11 PF08119 Toxin_31: Scorpion ac 89.0 0.08 1.7E-06 27.8 -0.7 28 48-79 9-36 (37)
12 PF14865 Macin: Macin; PDB: 2K 88.9 0.41 8.8E-06 28.1 2.2 34 34-70 8-41 (59)
13 PF07172 GRP: Glycine rich pro 88.1 0.5 1.1E-05 29.9 2.4 14 12-26 9-22 (95)
14 PF08086 Toxin_17: Ergtoxin fa 83.5 0.78 1.7E-05 24.8 1.4 24 50-78 18-41 (41)
15 PF06876 SCRL: Plant self-inco 79.5 0.63 1.4E-05 27.0 0.1 51 29-80 9-67 (67)
16 smart00004 NL Domain found in 70.9 2.7 5.8E-05 22.5 1.2 20 48-67 18-38 (38)
17 PF08027 Albumin_I: Albumin I; 68.8 1.9 4.2E-05 28.6 0.4 38 29-70 16-54 (120)
18 PF05294 Toxin_5: Scorpion sho 66.8 2.9 6.3E-05 21.6 0.7 20 50-78 13-32 (32)
19 KOG4742 Predicted chitinase [G 64.0 11 0.00024 28.4 3.7 18 51-70 36-53 (286)
20 PF10690 Myticin-prepro: Mytic 62.4 2.5 5.5E-05 27.0 0.0 27 51-78 29-55 (98)
21 PF09680 Tiny_TM_bacill: Prote 51.8 14 0.0003 18.0 1.6 14 12-25 6-19 (24)
22 PF12071 DUF3551: Protein of u 50.0 39 0.00084 20.7 3.8 38 30-69 25-66 (82)
23 PF00066 Notch: LNR domain; I 49.2 2.6 5.6E-05 22.3 -1.3 20 48-67 17-37 (38)
24 PF11415 Toxin_37: Antifungal 47.9 6 0.00013 20.9 -0.0 27 50-80 4-32 (35)
25 PF05399 EVI2A: Ectropic viral 46.3 20 0.00043 26.2 2.4 23 1-25 128-151 (227)
26 PF12606 RELT: Tumour necrosis 45.3 26 0.00057 19.7 2.4 15 11-25 6-20 (50)
27 TIGR01732 tiny_TM_bacill conse 42.6 27 0.00059 17.2 1.9 11 13-23 9-19 (26)
28 PHA02867 C-type lectin protein 37.1 27 0.00059 24.1 1.9 26 33-58 47-79 (167)
29 PF06607 Prokineticin: Prokine 35.5 15 0.00032 23.4 0.3 13 55-68 49-61 (97)
30 PF06103 DUF948: Bacterial pro 32.1 63 0.0014 19.3 2.8 6 11-16 7-12 (90)
31 PF11770 GAPT: GRB2-binding ad 31.4 54 0.0012 22.7 2.6 12 12-23 14-25 (158)
32 PF07423 DUF1510: Protein of u 30.1 48 0.001 23.9 2.3 7 12-18 20-26 (217)
33 COG3630 OadG Na+-transporting 29.6 74 0.0016 19.9 2.8 19 10-28 16-36 (84)
34 PF15144 DUF4576: Domain of un 28.4 55 0.0012 20.4 2.0 9 1-9 1-9 (88)
35 TIGR01195 oadG_fam sodium pump 27.3 85 0.0018 19.0 2.8 13 10-22 13-25 (82)
36 PF15102 TMEM154: TMEM154 prot 26.4 48 0.001 22.7 1.7 10 14-23 66-75 (146)
37 PF06143 Baculo_11_kDa: Baculo 26.1 71 0.0015 19.9 2.2 20 7-26 43-62 (84)
38 PF11812 DUF3333: Domain of un 24.5 74 0.0016 21.7 2.3 13 10-22 23-35 (155)
39 PF14341 PilX_N: PilX N-termin 24.1 1E+02 0.0022 16.8 2.5 8 12-19 7-14 (51)
40 PF15012 DUF4519: Domain of un 22.5 55 0.0012 18.9 1.2 12 12-23 38-49 (56)
41 cd00150 PlantTI Plant trypsin 20.9 37 0.00081 16.8 0.2 15 45-59 7-21 (27)
42 COG4768 Uncharacterized protei 20.7 1.3E+02 0.0028 20.4 2.9 16 7-22 8-23 (139)
43 PF08194 DIM: DIM protein; In 20.5 1E+02 0.0022 16.3 1.9 12 14-25 8-19 (36)
44 PF06692 MNSV_P7B: Melon necro 20.2 1.2E+02 0.0025 17.7 2.2 17 6-22 16-32 (61)
45 PF10960 DUF2762: Protein of u 20.0 96 0.0021 18.5 1.9 16 11-26 14-29 (71)
No 1
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems []. A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....
Probab=99.69 E-value=3.4e-18 Score=96.18 Aligned_cols=47 Identities=32% Similarity=0.784 Sum_probs=41.6
Q ss_pred ccccccCccceecCCCccccHHHhccccCCCCceeecCCCCcceEeecCC
Q 034823 33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC 82 (82)
Q Consensus 33 ~~C~~~S~~~~G~C~~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~~~C 82 (82)
++|+++|++|+|+|++|++|+++|++ |||.+|+|+++ .++|+|++||
T Consensus 1 k~C~~~S~tf~G~C~~~~~C~~~C~~-eg~~~G~C~~~--~~~C~C~~~C 47 (47)
T PF00304_consen 1 KTCERPSGTFKGLCFSDSNCANVCIN-EGFTGGKCSGP--LRRCFCTKPC 47 (47)
T ss_dssp EEEEEESSSS-SS-SSHHHHHHHHHH-CTSSEEEEETT--TTEEEEEEEE
T ss_pred CcccccCCCceeECCCcchhhHHhcc-CCCCCCEeCCC--CceEEEeCcC
Confidence 57999999999999999999999997 99999999964 5899999997
No 2
>smart00505 Knot1 Knottins. Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.
Probab=99.04 E-value=1.7e-10 Score=63.38 Aligned_cols=44 Identities=32% Similarity=0.800 Sum_probs=38.3
Q ss_pred cccccCccceecCCCcc-ccHHHhccccCCCCceeecCCCCcceEeec
Q 034823 34 QCSKRAQKWTGPCIKTG-SCRNHCRKREGAVDGACHYDFPGFACFCYY 80 (82)
Q Consensus 34 ~C~~~S~~~~G~C~~~~-~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~~ 80 (82)
+|+.+|.+|+|.|..+. +|++.|++ ||+.+|+|+.. .++|+|++
T Consensus 1 ~C~~~~~~~~g~C~~~~~~C~~~C~~-~g~~~G~C~~~--~~~C~C~~ 45 (45)
T smart00505 1 TCDGYSVTFSGNCKSSCALCAKLCKK-KGAKGGYCRGT--TRRCFCYK 45 (45)
T ss_pred CCcccccCCCCCccCCchHhHHHhhh-cCCCCCCcCCc--CCceEeeC
Confidence 47888989999999998 99999997 89999999864 46899974
No 3
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=98.68 E-value=1.4e-08 Score=52.87 Aligned_cols=33 Identities=42% Similarity=1.139 Sum_probs=28.7
Q ss_pred ecCCCccccHHHhccccCCCCceeecCCCCcceEee
Q 034823 44 GPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCY 79 (82)
Q Consensus 44 G~C~~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~ 79 (82)
|.|.++++|+++|++ ||+.+|+|..+ .++|+|+
T Consensus 1 g~C~~~~~C~~~Ck~-~g~~~G~C~~~--~~~C~C~ 33 (33)
T cd00107 1 GTCFSDSYCDKECKK-KGASGGYCYGQ--GLACWCY 33 (33)
T ss_pred CcCCCchhHHHHHhH-cCCCccEeCCC--CCeEEeC
Confidence 578889999999996 89999999864 4789995
No 4
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=98.16 E-value=1.8e-06 Score=54.55 Aligned_cols=64 Identities=22% Similarity=0.519 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhccCchhhcc-cccccCccceecCCC-ccccHHHhccc-cCCCCceeecCC---CCcceEeecC
Q 034823 12 VALIFAFFILFASFEMPVAEAK-QCSKRAQKWTGPCIK-TGSCRNHCRKR-EGAVDGACHYDF---PGFACFCYYN 81 (82)
Q Consensus 12 ~~~~fllllLlva~e~~~~ea~-~C~~~S~~~~G~C~~-~~~C~~~C~~~-Eg~~~G~C~~~~---~~~~C~C~~~ 81 (82)
+++++-+.+||.+.. ++|++ .|. .-.|+|.. +..|++.|++. .+|.+|+|.... ....|+|.++
T Consensus 11 ilvvvclsiLLisp~--eV~G~~~cd----~~~G~C~~~~~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C~Cc~~ 80 (90)
T PF10868_consen 11 ILVVVCLSILLISPT--EVDGRLKCD----SPFGACTPFSSDCNEPCKKFGSNYYGGQCVPVGPPPGDGVCYCCYY 80 (90)
T ss_pred hhHHHHHHHHccccc--eeCCeEccC----cccccCCchHHHHHHHHHhhccCCCCceeccCCCCCCCcEEEEecc
Confidence 333444444443331 36776 575 45699998 59999999974 368999998642 2568999763
No 5
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ]. All these peptides range in length from 38 to 51 amino acids. There are six conserved cysteines all involved in intrachain disulphide bonds. A schematic representation of peptides from the arthropod defensin family is shown below. +----------------------------+ | | xxCxxxxxxxxxxxxxxCxxxCxxxxxxxxxCxxxxxCxCxx | | | | +---|---------------+ | +-----------------+ 'C': conserved cysteine involved in a disulphide bond. Although low level sequence similarities have been reported [] between the arthropod defensins and mammalian defensins, the topological arrangement of the disulphide bonds as well as the tertiary structure [] are completely different in the two families.; GO: 0006952 defense response; PDB: 1FJN_A 1ICA_A 1L4V_A 2LLD_A 3E7R_L 3E7U_X 1ZFU_A 2B68_A 2NZ3_A 2NY8_X ....
Probab=96.80 E-value=0.00056 Score=36.10 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=23.9
Q ss_pred CccccHHHhccccCCCCceeecCCCCcceEee
Q 034823 48 KTGSCRNHCRKREGAVDGACHYDFPGFACFCY 79 (82)
Q Consensus 48 ~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~ 79 (82)
++..|..+|+. -|+.+|+|++. ..|.|+
T Consensus 7 n~~~C~~hC~~-~g~~GGyC~~~---~vC~Cr 34 (34)
T PF01097_consen 7 NHSACAAHCLS-IGYRGGYCNGK---GVCVCR 34 (34)
T ss_dssp TCHHHHHHHHH-HTCSEEEEETT---SCEEEE
T ss_pred CHHHHHHHHHH-hCCcceeCCCC---CEEEeC
Confidence 56789999997 69999999964 689985
No 6
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission. The complete covalent structure of the toxins has been deduced: it comprises around 66 amino acid residues and is cross- linked by 4 disulphide bridges [, ]. An anti-epilepsy peptide isolated from scorpion venom [] shows similarity to both scorpion neurotoxins and anti-insect toxins. This family also contains a group of proteinase inhibitors from Arabidopsis thaliana and Brassica spp., which belong to MEROPS inhibitor family I18, clan I-. The Brassica napus (Oil seed rape) and Sinapis alba (White mustard) inhibitors [, ], inhibit the catalytic activity of bovine beta-trypsin and bovine alpha-chymotrypsin, which belong to MEROPS peptidase family S1 (IPR001254 from INTERPRO) [].; GO: 0008200 ion channel inhibitor activity, 0005576 extracellular region; PDB: 2LI7_A 2LJM_A 2B3C_A 1B3C_A 1WWN_A 1JZA_B 1JZB_A 4AEI_A 1AHO_A 1PTX_A ....
Probab=96.31 E-value=0.0018 Score=37.21 Aligned_cols=35 Identities=37% Similarity=0.908 Sum_probs=27.6
Q ss_pred cCCCccccHHHhccccCCCCceeecCCC-CcceEeec
Q 034823 45 PCIKTGSCRNHCRKREGAVDGACHYDFP-GFACFCYY 80 (82)
Q Consensus 45 ~C~~~~~C~~~C~~~Eg~~~G~C~~~~~-~~~C~C~~ 80 (82)
.|..++.|++.|+. +|..+|+|..+.+ ...|+|..
T Consensus 14 ~C~~n~~C~~~Ck~-~ga~~GyC~~~~~~g~aCwC~~ 49 (54)
T PF00537_consen 14 SCFPNEYCNKECKK-KGAKSGYCYWWGPYGLACWCEG 49 (54)
T ss_dssp BSSSHHHHHHHHHH-TTSSEEEEECTETTEEEEEEEE
T ss_pred ECCCcchhhHHHHh-cCCCccEeeCCCCCCCeEECCC
Confidence 67777899999997 9999999987621 23599974
No 7
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=96.21 E-value=0.0041 Score=35.68 Aligned_cols=49 Identities=33% Similarity=0.735 Sum_probs=34.7
Q ss_pred ccccccCccceecCCCccccHHHhccccCCCCceeec-CCCCcceEeecCC
Q 034823 33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHY-DFPGFACFCYYNC 82 (82)
Q Consensus 33 ~~C~~~S~~~~G~C~~~~~C~~~C~~~Eg~~~G~C~~-~~~~~~C~C~~~C 82 (82)
+.|.+.-..-.++|. ...|+..|..+++...|.|.. ......|.|+|+|
T Consensus 9 ~~C~~~l~~~~~~C~-~~~C~~~C~~k~~g~~G~C~~~~~~~~~C~C~Y~C 58 (58)
T PF07333_consen 9 RQCHEVLPNKPGPCD-PQDCRSLCKKKYKGGVGTCIPKPKGPKQCLCTYNC 58 (58)
T ss_pred CcCceeCccCCCCCC-hHHHHHHHHHHcCCCceEeccCCCCCCeeEEEeeC
Confidence 348755443356887 588999999765544499987 2224689999998
No 8
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=95.50 E-value=0.02 Score=32.49 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=14.3
Q ss_pred ecCCCccccHHHhccccCCCCceee
Q 034823 44 GPCIKTGSCRNHCRKREGAVDGACH 68 (82)
Q Consensus 44 G~C~~~~~C~~~C~~~Eg~~~G~C~ 68 (82)
.+|..|++|.+.|.. . ..-+|.
T Consensus 28 ~~C~~d~DCp~~c~~-~--~~~kCi 49 (54)
T PF07127_consen 28 IPCKTDSDCPKDCPP-P--FIPKCI 49 (54)
T ss_pred cccCccccCCCCCCC-C--cCcEeC
Confidence 367788889888754 2 345554
No 9
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=94.48 E-value=0.018 Score=29.96 Aligned_cols=31 Identities=32% Similarity=0.889 Sum_probs=25.5
Q ss_pred cCCCccccHHHhccccCCCCceeecCCCCcceEee
Q 034823 45 PCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCY 79 (82)
Q Consensus 45 ~C~~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~ 79 (82)
.|..+.+|...|+...|...|.|-. ++|.||
T Consensus 2 ~C~~s~~C~~~Ck~~~g~~~gKCmN----~kC~Cy 32 (32)
T PF00451_consen 2 KCTGSKDCWPPCKKATGCLNGKCMN----GKCKCY 32 (32)
T ss_dssp BTSSHHHHHHHHHHHTSSSEEEEET----TEEEEE
T ss_pred ccCCchHHHHHhhhhhCCCCCCccC----CCceeC
Confidence 3667788999999866888999985 589986
No 10
>PF14866 Toxin_38: Potassium channel toxin
Probab=89.82 E-value=0.17 Score=29.47 Aligned_cols=28 Identities=32% Similarity=0.796 Sum_probs=22.3
Q ss_pred CccccHHHhccccCCCCceeecCCCCcceEeecC
Q 034823 48 KTGSCRNHCRKREGAVDGACHYDFPGFACFCYYN 81 (82)
Q Consensus 48 ~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~~~ 81 (82)
.++.|..+|+. ++ ..|+|+++ .|.|-.|
T Consensus 28 i~~~Ce~HC~~-~~-~~G~C~~~----kCkC~~~ 55 (56)
T PF14866_consen 28 IEGWCEDHCQA-KK-KEGKCHGT----KCKCGKP 55 (56)
T ss_pred HHhHHHHHHHh-cC-cCCeecCc----ccccCCC
Confidence 36679999986 66 58999975 8998765
No 11
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins. These toxins are named parabutoxins, that binds and inhibit voltage-sensitive potassium channels and inhibit the vertebrate potassium channel Kv1.1 with low affinity. Furthermore, they lack the crucial pore-plugging lysine. In addition, the second important residue of the dyad, the hydrophobic residue (Phe or Tyr) is also missing [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=89.00 E-value=0.08 Score=27.76 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=23.2
Q ss_pred CccccHHHhccccCCCCceeecCCCCcceEee
Q 034823 48 KTGSCRNHCRKREGAVDGACHYDFPGFACFCY 79 (82)
Q Consensus 48 ~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~ 79 (82)
+|.-|...|+. |.|..|-|++. .+|.|.
T Consensus 9 sdemcviyckg-eeystgvcdgp---qkckcs 36 (37)
T PF08119_consen 9 SDEMCVIYCKG-EEYSTGVCDGP---QKCKCS 36 (37)
T ss_pred cCceEEEEecC-ceeccccccCC---cccccC
Confidence 36679999997 88999999975 688885
No 12
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A.
Probab=88.87 E-value=0.41 Score=28.11 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=22.9
Q ss_pred cccccCccceecCCCccccHHHhccccCCCCceeecC
Q 034823 34 QCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYD 70 (82)
Q Consensus 34 ~C~~~S~~~~G~C~~~~~C~~~C~~~Eg~~~G~C~~~ 70 (82)
.|...|..+.|.= ..+|++.|+. -|..+|.|...
T Consensus 8 RCs~~ss~~Tgil--W~sC~~~Ckc-~G~~gG~C~~~ 41 (59)
T PF14865_consen 8 RCSRWSSWFTGIL--WKSCNDRCKC-LGHDGGECVLS 41 (59)
T ss_dssp CCCHS-TTTTTTT--T-CCHHHHHT-TT-SEEEEEE-
T ss_pred hcCcccccccccc--HhHhhHHHHH-cCCCCCceEeC
Confidence 4666666666654 4789999995 88999999753
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.12 E-value=0.5 Score=29.91 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhcc
Q 034823 12 VALIFAFFILFASFE 26 (82)
Q Consensus 12 ~~~~fllllLlva~e 26 (82)
++| ||++|||+++|
T Consensus 9 L~l-~LA~lLlisSe 22 (95)
T PF07172_consen 9 LGL-LLAALLLISSE 22 (95)
T ss_pred HHH-HHHHHHHHHhh
Confidence 444 44445555555
No 14
>PF08086 Toxin_17: Ergtoxin family; InterPro: IPR012622 The Ergtoxin (ErgTx) family is a class of peptides from scorpion venom that specifically block ERG (ether-a-go-go-related gene) K+ channels of the nerve, heart and endocrine cells [, , ]. Peptides of the ErgTx family have from 42 to 47 amino acid residues cross-linked by four disulphide bridges. The four disulphide bridges have been assigned as C1-C4, C2-C6, C3-C7 and C5-C8 (see the schematic representation below) []. ErgTxs consist of a triple-stranded beta-sheet and an alpha-helix, as is typical of K+ channel scorpion toxins. There is a large hydrophobic patch on the surface of the toxin, surrounding a central lysine residue located near the beta-hairpin loop between the second and third strands of the beta-sheet. It has been postulated that this hydrophobic patch is likely to form part of the binding surface of the toxin []. Peptides of the ErgTx family possess a Knottin scaffold (see http://knottin.cbs.cnrs.fr). Some proteins known to belong to the ErgTx family are listed below: ErgTx1, ErgTx2 and ErgTx3 from Centruroides elegans (Bark scorpion). ErgTx1, ErgTx2, ErgTx3 and ErgTx4 from Centruroides exilicauda (Bark scorpion). ErgTx1, ErgTx2 and ErgTx3 from Centruroides gracilis (Slenderbrown scorpion) (Florida bark scorpion). ErgTx1, ErgTx2, ErgTx3 and ErgTx4 from Centruroides limpidus limpidus (Mexican scorpion). ErgTx1, ErgTx2, ErgTx3, ErgTx4, ErgTx5 and gamma-KTx 4.12 from Centruroides sculpturatus (Bark scorpion). ErgTx, ErgTx2, ErgTx3, ErgTx4 and ErgTx5 from Centruroides noxius (Mexican scorpion). ; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1NE5_A 1PX9_A.
Probab=83.50 E-value=0.78 Score=24.75 Aligned_cols=24 Identities=42% Similarity=1.103 Sum_probs=18.9
Q ss_pred cccHHHhccccCCCCceeecCCCCcceEe
Q 034823 50 GSCRNHCRKREGAVDGACHYDFPGFACFC 78 (82)
Q Consensus 50 ~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C 78 (82)
..|...|++ .|..+|.|..+ +|.|
T Consensus 18 ~qc~~cckk-ag~~~gtc~~f----kckc 41 (41)
T PF08086_consen 18 GQCDDCCKK-AGHRGGTCVYF----KCKC 41 (41)
T ss_dssp HHHHHHHHH-HTSS-EEEESS----SEEE
T ss_pred HHHHHHHHH-hCCCCceeEEE----EecC
Confidence 579999996 89899999864 7876
No 15
>PF06876 SCRL: Plant self-incompatibility response (SCRL) protein; InterPro: IPR010682 This family consists of several plant self-incompatibility response (SCRL) proteins. The male component of the self-incompatibility response in Brassica has been shown to be encoded by the S locus cysteine-rich gene (SCR). SCR is related, at the sequence level, to the pollen coat protein (PCP) gene family whose members encode small, cysteine-rich proteins located in the proteo-lipidic surface layer (tryphine) of Brassica pollen grains [].; GO: 0007165 signal transduction; PDB: 1UGL_A.
Probab=79.48 E-value=0.63 Score=27.02 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=17.3
Q ss_pred hhhcc---cccccCccceecCCCccc--cHHHhccc--cCCCCceeecCCCCc-ceEeec
Q 034823 29 VAEAK---QCSKRAQKWTGPCIKTGS--CRNHCRKR--EGAVDGACHYDFPGF-ACFCYY 80 (82)
Q Consensus 29 ~~ea~---~C~~~S~~~~G~C~~~~~--C~~~C~~~--Eg~~~G~C~~~~~~~-~C~C~~ 80 (82)
++||. .| .....|.|.|..+.+ |.+.=.+. .....=.|....... .|.|++
T Consensus 9 eVEAn~~k~C-~~~~~f~G~Cg~~G~~~C~~~~~~~~~~~p~~C~C~~~~~~~r~C~C~~ 67 (67)
T PF06876_consen 9 EVEANKMKRC-PDKFNFPGKCGNSGNKTCEKDYKKGKKKKPSNCTCTDSPKNGRLCDCKC 67 (67)
T ss_dssp -----------SSSS-EESSS-HHHHHHHHHH---------SS---B--SSSEEB--SS-
T ss_pred eeecccCCCC-CCCceEcCcCCCCchhHHHHHhhhcccccCCcCEecCCCCCCEEeeCcC
Confidence 36663 59 456789999997654 77777641 123455565332233 488763
No 16
>smart00004 NL Domain found in Notch and Lin-12. The Notch protein is essential for the proper differentiation of the Drosophila ectoderm. This protein contains 3 NL domains.
Probab=70.92 E-value=2.7 Score=22.50 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=14.0
Q ss_pred CccccHHHhcccc-CCCCcee
Q 034823 48 KTGSCRNHCRKRE-GAVDGAC 67 (82)
Q Consensus 48 ~~~~C~~~C~~~E-g~~~G~C 67 (82)
.+..|++.|.+.+ +|.||.|
T Consensus 18 ~dg~CD~~CN~~~C~~DG~DC 38 (38)
T smart00004 18 GDGVCDEECNNAECLWDGGDC 38 (38)
T ss_pred CCCccchhhCcccCCCCCCCC
Confidence 4678889997633 4777765
No 17
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=68.81 E-value=1.9 Score=28.57 Aligned_cols=38 Identities=34% Similarity=0.649 Sum_probs=17.1
Q ss_pred hhhcccccccCccc-eecCCCccccHHHhccccCCCCceeecC
Q 034823 29 VAEAKQCSKRAQKW-TGPCIKTGSCRNHCRKREGAVDGACHYD 70 (82)
Q Consensus 29 ~~ea~~C~~~S~~~-~G~C~~~~~C~~~C~~~Eg~~~G~C~~~ 70 (82)
.+||..|...-..| .-+|.+ ++|+ |.- .|...|.|...
T Consensus 16 KVEA~~C~g~Cs~Fe~ppCgs-s~Cr--CiP-~~l~~G~C~~p 54 (120)
T PF08027_consen 16 KVEACDCSGVCSPFEMPPCGS-SDCR--CIP-WGLFVGFCIYP 54 (120)
T ss_dssp ------SECEE-TTSSSCCC--TTSE--EEE--SSS-EEEE-T
T ss_pred eeeeeccCccccCCcCCCCCC-CCee--EEE-eeecceEEECC
Confidence 47777665432344 236764 6776 775 77778999753
No 18
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=66.81 E-value=2.9 Score=21.64 Aligned_cols=20 Identities=35% Similarity=1.047 Sum_probs=14.5
Q ss_pred cccHHHhccccCCCCceeecCCCCcceEe
Q 034823 50 GSCRNHCRKREGAVDGACHYDFPGFACFC 78 (82)
Q Consensus 50 ~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C 78 (82)
.+|++.|.+ .|+|.+. +|.|
T Consensus 13 ~kC~~CCgg-----~GkC~Gp----qClC 32 (32)
T PF05294_consen 13 KKCRDCCGG-----RGKCFGP----QCLC 32 (32)
T ss_dssp HHHHHHCTT-----SEEEETT----EEEE
T ss_pred HHHHHHhCC-----CCeEcCC----cccC
Confidence 468888865 2999863 7876
No 19
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=63.97 E-value=11 Score=28.37 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=9.4
Q ss_pred ccHHHhccccCCCCceeecC
Q 034823 51 SCRNHCRKREGAVDGACHYD 70 (82)
Q Consensus 51 ~C~~~C~~~Eg~~~G~C~~~ 70 (82)
.+..+|+ .+-..|.|.+.
T Consensus 36 ~~~~~~~--~~c~~g~c~~~ 53 (286)
T KOG4742|consen 36 TTPPYCK--FGCGPGPCSGP 53 (286)
T ss_pred ccccccc--CCCCCCCCCCC
Confidence 5666664 33334467654
No 20
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=62.38 E-value=2.5 Score=26.97 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=14.4
Q ss_pred ccHHHhccccCCCCceeecCCCCcceEe
Q 034823 51 SCRNHCRKREGAVDGACHYDFPGFACFC 78 (82)
Q Consensus 51 ~C~~~C~~~Eg~~~G~C~~~~~~~~C~C 78 (82)
-|.+.|.. -+-++--|....|+..|+|
T Consensus 29 yC~~fCgs-a~C~~Y~c~~l~~gk~C~C 55 (98)
T PF10690_consen 29 YCKKFCGS-ARCSLYGCYSLHPGKICKC 55 (98)
T ss_dssp -HHHHHHH-TT-SEEEEEEETTEEEEEE
T ss_pred HHHHhcCC-CCCcEEEEEEECCCeEEEE
Confidence 48888886 6655555655533333444
No 21
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=51.84 E-value=14 Score=17.96 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhc
Q 034823 12 VALIFAFFILFASF 25 (82)
Q Consensus 12 ~~~~fllllLlva~ 25 (82)
++++++|.+|++..
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 44455555555443
No 22
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=49.98 E-value=39 Score=20.74 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=22.5
Q ss_pred hhcc---cccc-cCccceecCCCccccHHHhccccCCCCceeec
Q 034823 30 AEAK---QCSK-RAQKWTGPCIKTGSCRNHCRKREGAVDGACHY 69 (82)
Q Consensus 30 ~ea~---~C~~-~S~~~~G~C~~~~~C~~~C~~~Eg~~~G~C~~ 69 (82)
++|+ .|.. ....+.|.|.-++ .+.|+......++.|..
T Consensus 25 A~A~dyp~Clq~~~~g~~g~C~y~t--~~QC~asASGr~a~C~~ 66 (82)
T PF12071_consen 25 AQARDYPYCLQGGGWGYPGDCSYST--YEQCRASASGRGAYCGI 66 (82)
T ss_pred hhhcCCcEEEeCCCCCCCccCCcCC--HHHHHHHhcccCccccc
Confidence 5554 6885 2223345565433 47787766667899964
No 23
>PF00066 Notch: LNR domain; InterPro: IPR000800 The Notch domain is also called the 'DSL' domain or the Lin-12/Notch repeat (LNR). The LNR region is present only in Notch related proteins C-terminal to EGF repeats. The lin-12/Notch proteins act as transmembrane receptors for intercellular signals that specify cell fates during animal development. In response to a ligand, proteolytic cleavages release the intracellular domain of Notch, which then gains access to the nucleus and acts as a transcriptional co-activator []. The LNR region is supposed to negatively regulate the Lin-12/Notch proteins activity. It is a triplication of an around 35-40 amino acids module present on the extracellular part of the protein [, ]. Each module contains six cysteine residues engaged in three disulphide bonds and three conserved aspartate and asparagine residues []. The biochemical characterisation of a recombinantly expressed LIN-12.1 module from the human Notch1 receptor indicate that the disulphide bonds are formed between the first and fifth, second and fourth, and third and sixth cysteines. The formation of this particular disulphide isomer is favored by the presence of Ca2+, which is also required to maintain the structural integrity of the rLIN-12.1 module. The conserved aspartate and asparagine residues are likely to be important for Ca2+ binding, and thereby contribute to the native fold.; GO: 0030154 cell differentiation, 0016020 membrane; PDB: 3ETO_A 3I08_A 1PB5_A 3L95_X 2OO4_A.
Probab=49.17 E-value=2.6 Score=22.35 Aligned_cols=20 Identities=35% Similarity=0.838 Sum_probs=9.5
Q ss_pred CccccHHHhcccc-CCCCcee
Q 034823 48 KTGSCRNHCRKRE-GAVDGAC 67 (82)
Q Consensus 48 ~~~~C~~~C~~~E-g~~~G~C 67 (82)
.+..|+..|.+.| +|.+|.|
T Consensus 17 gng~CD~~Cn~~~C~~DGgDC 37 (38)
T PF00066_consen 17 GNGVCDPECNNPECGFDGGDC 37 (38)
T ss_dssp TSSS--GGG-SCCCGHHHGTT
T ss_pred CCCccChhhCccccCCCCCcC
Confidence 4566777776533 3555555
No 24
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=47.87 E-value=6 Score=20.87 Aligned_cols=27 Identities=26% Similarity=0.720 Sum_probs=20.3
Q ss_pred cccHHHhccccC--CCCceeecCCCCcceEeec
Q 034823 50 GSCRNHCRKREG--AVDGACHYDFPGFACFCYY 80 (82)
Q Consensus 50 ~~C~~~C~~~Eg--~~~G~C~~~~~~~~C~C~~ 80 (82)
..|...|+.++| |..-+|++. .|.|-+
T Consensus 4 ~~CWa~CqaqhgiyFRRAyCdGs----~C~Cvf 32 (35)
T PF11415_consen 4 QSCWANCQAQHGIYFRRAYCDGS----RCKCVF 32 (35)
T ss_dssp HHHHHHHHHHS-TTEEEEEEETT----EEEEEE
T ss_pred HHHHHHHHHhhcchhhhhhccCC----eeEEEe
Confidence 468899998666 577899874 788865
No 25
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=46.32 E-value=20 Score=26.20 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=12.5
Q ss_pred CccchhhHHHHHHHHHHH-HHHHHhc
Q 034823 1 MAKSVASITTAVALIFAF-FILFASF 25 (82)
Q Consensus 1 mak~~~~~~~~~~~~fll-llLlva~ 25 (82)
||=+||+|| ||++||+ .+||.++
T Consensus 128 ~amLIClII--IAVLfLICT~LfLST 151 (227)
T PF05399_consen 128 MAMLICLII--IAVLFLICTLLFLST 151 (227)
T ss_pred hhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 455688876 4445443 3444444
No 26
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=45.32 E-value=26 Score=19.73 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhc
Q 034823 11 AVALIFAFFILFASF 25 (82)
Q Consensus 11 ~~~~~fllllLlva~ 25 (82)
+++++|++.+|.++.
T Consensus 6 iV~i~iv~~lLg~~I 20 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSI 20 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666555554
No 27
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=42.59 E-value=27 Score=17.21 Aligned_cols=11 Identities=55% Similarity=0.899 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 034823 13 ALIFAFFILFA 23 (82)
Q Consensus 13 ~~~fllllLlv 23 (82)
+++++|.+|++
T Consensus 9 ~livVLFILLI 19 (26)
T TIGR01732 9 ALIVVLFILLV 19 (26)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 28
>PHA02867 C-type lectin protein; Provisional
Probab=37.11 E-value=27 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=15.3
Q ss_pred ccccccCccceecCCC-------ccccHHHhcc
Q 034823 33 KQCSKRAQKWTGPCIK-------TGSCRNHCRK 58 (82)
Q Consensus 33 ~~C~~~S~~~~G~C~~-------~~~C~~~C~~ 58 (82)
..|......+.+.|+. ..+-...|++
T Consensus 47 ~~CP~gWi~~~~~CY~fs~~~~tW~~A~~~C~~ 79 (167)
T PHA02867 47 KVCPDEWIGYNSKCYYFTINETNWNDSKKLCDV 79 (167)
T ss_pred CCCCCCCEEECCEEEEEeccccCHHHHHHHHhh
Confidence 4576555555666762 3456677764
No 29
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=35.51 E-value=15 Score=23.41 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=4.8
Q ss_pred HhccccCCCCceee
Q 034823 55 HCRKREGAVDGACH 68 (82)
Q Consensus 55 ~C~~~Eg~~~G~C~ 68 (82)
.|+- -|..|..|+
T Consensus 49 vCkP-lG~~Ge~Ch 61 (97)
T PF06607_consen 49 VCKP-LGQEGEPCH 61 (97)
T ss_dssp CCEE--B-TT-EE-
T ss_pred ceeC-CCcCcCccc
Confidence 4553 455556665
No 30
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.09 E-value=63 Score=19.29 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.2
Q ss_pred HHHHHH
Q 034823 11 AVALIF 16 (82)
Q Consensus 11 ~~~~~f 16 (82)
++|+++
T Consensus 7 Aiaf~v 12 (90)
T PF06103_consen 7 AIAFAV 12 (90)
T ss_pred HHHHHH
Confidence 333333
No 31
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=31.43 E-value=54 Score=22.72 Aligned_cols=12 Identities=8% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 034823 12 VALIFAFFILFA 23 (82)
Q Consensus 12 ~~~~fllllLlv 23 (82)
+++.||+|||+-
T Consensus 14 igi~Ll~lLl~c 25 (158)
T PF11770_consen 14 IGISLLLLLLLC 25 (158)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 32
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.05 E-value=48 Score=23.90 Aligned_cols=7 Identities=0% Similarity=0.358 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 034823 12 VALIFAF 18 (82)
Q Consensus 12 ~~~~fll 18 (82)
|++++||
T Consensus 20 I~IV~lL 26 (217)
T PF07423_consen 20 IGIVSLL 26 (217)
T ss_pred HHHHHHH
Confidence 4443333
No 33
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=29.64 E-value=74 Score=19.86 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH--HhccCc
Q 034823 10 TAVALIFAFFILF--ASFEMP 28 (82)
Q Consensus 10 ~~~~~~fllllLl--va~e~~ 28 (82)
+-+++.|++|.|| +...|+
T Consensus 16 lGmg~VflfL~iLi~~~~~m~ 36 (84)
T COG3630 16 LGMGFVFLFLSILIYAMRGMG 36 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 333454
No 34
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=28.37 E-value=55 Score=20.43 Aligned_cols=9 Identities=56% Similarity=0.538 Sum_probs=5.0
Q ss_pred CccchhhHH
Q 034823 1 MAKSVASIT 9 (82)
Q Consensus 1 mak~~~~~~ 9 (82)
||-||.-++
T Consensus 1 MAvSvLrlt 9 (88)
T PF15144_consen 1 MAVSVLRLT 9 (88)
T ss_pred CchHHHHHH
Confidence 666655443
No 35
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=27.32 E-value=85 Score=19.02 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 034823 10 TAVALIFAFFILF 22 (82)
Q Consensus 10 ~~~~~~fllllLl 22 (82)
+-+++.|++|+++
T Consensus 13 ~GM~~VF~fL~lL 25 (82)
T TIGR01195 13 LGMGIVFLFLSLL 25 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 36
>PF15102 TMEM154: TMEM154 protein family
Probab=26.44 E-value=48 Score=22.68 Aligned_cols=10 Identities=10% Similarity=0.494 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 034823 14 LIFAFFILFA 23 (82)
Q Consensus 14 ~~fllllLlv 23 (82)
++|++|+|++
T Consensus 66 VLLvlLLl~v 75 (146)
T PF15102_consen 66 VLLVLLLLSV 75 (146)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 37
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=26.06 E-value=71 Score=19.89 Aligned_cols=20 Identities=5% Similarity=0.208 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 034823 7 SITTAVALIFAFFILFASFE 26 (82)
Q Consensus 7 ~~~~~~~~~fllllLlva~e 26 (82)
+++.++.++|+++++.+...
T Consensus 43 ~lVfVii~lFi~ll~~i~~~ 62 (84)
T PF06143_consen 43 FLVFVIIVLFILLLYNINKN 62 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555553
No 38
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=24.48 E-value=74 Score=21.65 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 034823 10 TAVALIFAFFILF 22 (82)
Q Consensus 10 ~~~~~~fllllLl 22 (82)
++++++||+++|.
T Consensus 23 i~~~l~fL~~ll~ 35 (155)
T PF11812_consen 23 IAIALAFLVILLF 35 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 39
>PF14341 PilX_N: PilX N-terminal
Probab=24.10 E-value=1e+02 Score=16.84 Aligned_cols=8 Identities=50% Similarity=0.654 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 034823 12 VALIFAFF 19 (82)
Q Consensus 12 ~~~~flll 19 (82)
++++++++
T Consensus 7 vaLi~l~v 14 (51)
T PF14341_consen 7 VALIILLV 14 (51)
T ss_pred HHHHHHHH
Confidence 44444433
No 40
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=22.46 E-value=55 Score=18.94 Aligned_cols=12 Identities=33% Similarity=0.885 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 034823 12 VALIFAFFILFA 23 (82)
Q Consensus 12 ~~~~fllllLlv 23 (82)
++.++++|++++
T Consensus 38 l~~~~~~Ivv~v 49 (56)
T PF15012_consen 38 LAAVFLFIVVFV 49 (56)
T ss_pred HHHHHHHHhhee
Confidence 344455555554
No 41
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=20.90 E-value=37 Score=16.85 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=10.4
Q ss_pred cCCCccccHHHhccc
Q 034823 45 PCIKTGSCRNHCRKR 59 (82)
Q Consensus 45 ~C~~~~~C~~~C~~~ 59 (82)
.|..|++|-..|+=.
T Consensus 7 ~Ck~DsDCl~~CiC~ 21 (27)
T cd00150 7 ECKRDSDCLAECICL 21 (27)
T ss_pred eccccccccCCCEEc
Confidence 466778887777653
No 42
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=20.69 E-value=1.3e+02 Score=20.44 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 034823 7 SITTAVALIFAFFILF 22 (82)
Q Consensus 7 ~~~~~~~~~fllllLl 22 (82)
.++.|+|+++|.+.|+
T Consensus 8 ~~iiAiAf~vL~I~li 23 (139)
T COG4768 8 LAIIAIAFLVLVIYLI 23 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 43
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=20.50 E-value=1e+02 Score=16.27 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhc
Q 034823 14 LIFAFFILFASF 25 (82)
Q Consensus 14 ~~fllllLlva~ 25 (82)
+++++|.|+.+.
T Consensus 8 ~~l~lLal~~a~ 19 (36)
T PF08194_consen 8 FALLLLALAAAV 19 (36)
T ss_pred HHHHHHHHHhcc
Confidence 344444444444
No 44
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.18 E-value=1.2e+02 Score=17.72 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034823 6 ASITTAVALIFAFFILF 22 (82)
Q Consensus 6 ~~~~~~~~~~fllllLl 22 (82)
.++++.+++.|.++-.|
T Consensus 16 ~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 16 PLLILIISFVFFLITSL 32 (61)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34444444444444433
No 45
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.03 E-value=96 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcc
Q 034823 11 AVALIFAFFILFASFE 26 (82)
Q Consensus 11 ~~~~~fllllLlva~e 26 (82)
++|++|+.|++-+--+
T Consensus 14 ~fA~LFv~Ll~yvlK~ 29 (71)
T PF10960_consen 14 IFAVLFVWLLFYVLKE 29 (71)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4677777776655444
Done!