BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034824
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O31785|PKSS_BACSU Polyketide biosynthesis cytochrome P450 PksS OS=Bacillus subtilis
(strain 168) GN=pksS PE=3 SV=2
Length = 405
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 6 SRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLR 65
S+L+ +S LF + +ET V +L G L +++HK E+++Q + AV+ LR
Sbjct: 224 SKLSEKELYSMLFLLVVAGLETTVNLLGSGTLALLQHKKECEKLKQQPEMIATAVEELLR 283
>sp|Q64QU2|CH60_BACFR 60 kDa chaperonin OS=Bacteroides fragilis (strain YCH46) GN=groL
PE=3 SV=1
Length = 545
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 35 GPLG---IIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK 82
GP G IIE KF A + + TV + ++ L +AYQ G++++K+ K
Sbjct: 31 GPKGRNVIIEKKFGAPHITKDGVTVAKEIE--LTDAYQNTGAQLVKEVASK 79
>sp|Q5LAF6|CH60_BACFN 60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=groL PE=3 SV=1
Length = 545
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 35 GPLG---IIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK 82
GP G IIE KF A + + TV + ++ L +AYQ G++++K+ K
Sbjct: 31 GPKGRNVIIEKKFGAPHITKDGVTVAKEIE--LTDAYQNTGAQLVKEVASK 79
>sp|Q8A6P8|CH60_BACTN 60 kDa chaperonin OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=groL
PE=3 SV=1
Length = 545
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 35 GPLG---IIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK 82
GP G IIE KF A + + TV + ++ L +AYQ G++++K+ K
Sbjct: 31 GPKGRNVIIEKKFGAPHITKDGVTVAKEIE--LADAYQNTGAQLVKEVASK 79
>sp|Q8KCW4|IMDH_CHLTE Inosine-5'-monophosphate dehydrogenase OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=guaB PE=3 SV=1
Length = 494
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 15 SRLFRQLE-------------TEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQ 61
SRL RQ+E TE E + + + G +GII S +E + A V+R
Sbjct: 32 SRLTRQIEVNIPLVSAAMDTVTEAELAIALARAGGIGIIHKNLSIDEQARQVAKVKRFES 91
Query: 62 NWLRNAYQEQGSEILKDYID 81
+RN ++D ID
Sbjct: 92 GIIRNPIHLFEDATIQDAID 111
>sp|A6KXA0|CH60_BACV8 60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM
1447 / NCTC 11154) GN=groL PE=3 SV=1
Length = 545
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 24 EMETVVKVLQPGPLG---IIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYI 80
E+ VKV GP G IIE KF A + + TV + V+ L +A+Q G++++K
Sbjct: 21 ELANAVKVTL-GPKGRNVIIEKKFGAPHITKDGVTVAKEVE--LADAFQNTGAQLVKSVA 77
Query: 81 DK 82
K
Sbjct: 78 SK 79
>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis
thaliana GN=EXS PE=1 SV=1
Length = 1192
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 19 RQLETEMETVVKVLQPGPLGIIEH-KFSAEEVRQASATVERAVQNWLRN 66
R+ EMET+ KV P + ++ + FS E++ V ++ +WLRN
Sbjct: 956 REFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRN 1004
>sp|C5BDG5|RBSD_EDWI9 D-ribose pyranase OS=Edwardsiella ictaluri (strain 93-146) GN=rbsD
PE=3 SV=1
Length = 139
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 40 IEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYI 80
+E A+E+ +A+ + R + WL+ Q QG+ I DY+
Sbjct: 64 VERAVLAQEMVEANPDIHRQLVTWLQRLAQTQGNAIHIDYV 104
>sp|B3PGQ8|DNLJ_CELJU DNA ligase OS=Cellvibrio japonicus (strain Ueda107) GN=ligA PE=3
SV=1
Length = 680
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 3 ASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLG--IIEHKFSAEEVRQASATVERAV 60
A+ LAN F L + E + ET+V+V GP+G + F+ E RQA A + A
Sbjct: 529 ATARNLANH--FGSLEKLAEADEETLVQVNDVGPVGAHFVAEFFAQESNRQAVADLRAAG 586
Query: 61 QNW 63
+W
Sbjct: 587 IHW 589
>sp|Q0I1S1|RBSD_HAES1 D-ribose pyranase OS=Haemophilus somnus (strain 129Pt) GN=rbsD PE=3
SV=1
Length = 139
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 40 IEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYID 81
+EH A+E+R+ + + A+ + LR ++QG+ I +Y++
Sbjct: 64 VEHAVVAKEIREKNPQIHDALLDSLRKLSEQQGNCIAVEYVE 105
>sp|B0UV47|RBSD_HAES2 D-ribose pyranase OS=Haemophilus somnus (strain 2336) GN=rbsD PE=3
SV=1
Length = 139
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 40 IEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYID 81
+EH A+E+R+ + + A+ + LR ++QG+ I +Y++
Sbjct: 64 VEHAVVAKEIREKNPQIHDALLDSLRKLSEQQGNCIAVEYVE 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,810,892
Number of Sequences: 539616
Number of extensions: 823528
Number of successful extensions: 2814
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2805
Number of HSP's gapped (non-prelim): 16
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)