Query 034824
Match_columns 82
No_of_seqs 14 out of 16
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 10:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qv0_A Protein MRKE; structura 78.0 2.8 9.7E-05 24.0 3.5 44 27-73 95-138 (143)
2 3kht_A Response regulator; PSI 73.8 5.9 0.0002 22.8 4.1 45 25-72 93-138 (144)
3 1k66_A Phytochrome response re 70.4 7.4 0.00025 22.0 4.0 42 25-69 104-145 (149)
4 1k68_A Phytochrome response re 70.0 7.8 0.00027 21.5 4.0 42 25-69 97-138 (140)
5 2rjn_A Response regulator rece 69.4 14 0.00048 21.4 5.2 51 24-77 90-141 (154)
6 3cg4_A Response regulator rece 62.4 9.7 0.00033 21.6 3.4 45 26-73 94-138 (142)
7 3cg0_A Response regulator rece 62.1 19 0.00064 20.2 4.6 44 25-71 94-137 (140)
8 1f8v_D Mature capsid protein g 61.2 1.7 5.9E-05 25.4 0.0 9 33-41 21-29 (40)
9 1s8n_A Putative antiterminator 60.0 23 0.00078 21.8 5.1 42 24-68 96-137 (205)
10 2pln_A HP1043, response regula 59.8 6.6 0.00023 22.4 2.4 39 25-66 98-137 (137)
11 1i3c_A Response regulator RCP1 58.5 15 0.00051 21.4 3.8 41 25-68 103-143 (149)
12 1nov_D Nodamura virus coat pro 55.8 2.2 7.5E-05 25.4 -0.2 9 33-41 21-29 (44)
13 3kcn_A Adenylate cyclase homol 55.1 25 0.00085 20.4 4.4 44 24-70 87-131 (151)
14 2xz9_A Phosphoenolpyruvate-pro 55.1 22 0.00074 26.3 5.1 41 21-61 121-162 (324)
15 3jte_A Response regulator rece 51.3 27 0.00092 19.8 4.1 32 24-55 88-119 (143)
16 2az0_A B2 protein; protein-RNA 50.9 32 0.0011 22.2 4.7 41 16-63 6-59 (73)
17 1qo0_D AMIR; binding protein, 48.2 17 0.00057 22.3 3.0 40 25-67 91-130 (196)
18 4a18_U RPL13, 60S ribosomal pr 48.1 2.5 8.7E-05 31.4 -0.9 40 43-82 72-120 (206)
19 3grc_A Sensor protein, kinase; 48.0 30 0.001 19.5 3.9 42 25-69 92-134 (140)
20 3u5e_L 60S ribosomal protein L 47.0 2.3 7.8E-05 31.5 -1.3 40 43-82 74-122 (199)
21 3cnb_A DNA-binding response re 45.0 20 0.00069 20.0 2.8 41 24-67 95-135 (143)
22 3cu5_A Two component transcrip 44.5 11 0.00036 22.0 1.6 41 27-70 91-131 (141)
23 2di0_A Activating signal coint 43.7 9.5 0.00033 23.9 1.3 29 5-33 17-51 (71)
24 3f8m_A GNTR-family protein tra 42.3 62 0.0021 22.1 5.5 54 8-71 9-68 (248)
25 3h04_A Uncharacterized protein 41.5 43 0.0015 19.8 4.0 35 13-47 74-108 (275)
26 3llc_A Putative hydrolase; str 41.0 29 0.00098 20.7 3.2 30 18-47 89-118 (270)
27 2ly8_A Budding yeast chaperone 40.9 7.7 0.00026 26.2 0.6 19 9-27 2-20 (121)
28 4ham_A LMO2241 protein; struct 40.8 63 0.0021 19.9 5.2 54 9-70 10-69 (134)
29 3cfy_A Putative LUXO repressor 40.7 51 0.0017 18.8 4.5 29 25-53 88-116 (137)
30 3kxp_A Alpha-(N-acetylaminomet 40.1 28 0.00096 21.9 3.2 30 18-47 117-146 (314)
31 3crn_A Response regulator rece 38.0 54 0.0019 18.4 4.5 37 25-64 87-123 (132)
32 2qzj_A Two-component response 37.7 48 0.0017 18.9 3.7 30 24-53 86-115 (136)
33 3nqj_A Histone H3-like centrom 36.8 8.2 0.00028 24.5 0.3 32 8-50 3-34 (82)
34 2jk1_A HUPR, hydrogenase trans 35.1 40 0.0014 19.1 3.0 37 26-65 85-122 (139)
35 2z2q_B Coat protein gamma; wil 34.1 7.9 0.00027 23.0 -0.2 8 33-40 21-28 (44)
36 3eqz_A Response regulator; str 33.0 63 0.0022 17.7 3.7 38 23-63 89-126 (135)
37 3eb7_A Insecticidal delta-endo 31.9 55 0.0019 25.6 4.2 30 39-68 58-97 (589)
38 1dbw_A Transcriptional regulat 31.8 40 0.0014 18.7 2.6 28 25-52 87-114 (126)
39 2qvg_A Two component response 30.6 74 0.0025 17.8 4.0 28 25-52 101-128 (143)
40 2hue_B Histone H3; mini beta s 30.1 10 0.00035 23.7 -0.1 30 8-50 3-32 (77)
41 3rm3_A MGLP, thermostable mono 29.8 45 0.0015 20.3 2.8 30 18-47 90-121 (270)
42 4a2c_A Galactitol-1-phosphate 29.7 40 0.0014 22.9 2.8 34 23-56 297-333 (346)
43 1i5p_A Pesticidial crystal pro 29.6 63 0.0021 27.3 4.4 30 39-68 100-139 (633)
44 1srr_A SPO0F, sporulation resp 29.0 36 0.0012 18.7 2.1 28 25-52 87-114 (124)
45 3u1t_A DMMA haloalkane dehalog 28.7 64 0.0022 19.5 3.3 30 18-47 79-108 (309)
46 2r25_B Osmosensing histidine p 28.7 49 0.0017 18.8 2.7 37 25-64 93-129 (133)
47 3g9x_A Haloalkane dehalogenase 28.6 68 0.0023 19.4 3.4 29 18-46 81-109 (299)
48 3nqu_A Histone H3-like centrom 28.2 27 0.00092 24.2 1.7 33 8-51 61-93 (140)
49 2dst_A Hypothetical protein TT 27.8 78 0.0027 18.0 3.5 30 18-47 63-92 (131)
50 1vkh_A Putative serine hydrola 27.5 82 0.0028 19.7 3.8 35 13-47 92-126 (273)
51 3heb_A Response regulator rece 27.4 89 0.003 17.9 3.7 39 25-66 101-139 (152)
52 1nb0_A Hypothetical protein FL 27.1 51 0.0017 22.2 2.9 20 14-33 111-130 (147)
53 3oos_A Alpha/beta hydrolase fa 26.8 72 0.0025 18.8 3.2 30 18-47 74-103 (278)
54 3qvm_A OLEI00960; structural g 26.7 79 0.0027 18.7 3.4 30 18-47 81-110 (282)
55 3gt7_A Sensor protein; structu 26.3 55 0.0019 19.1 2.7 39 24-65 92-130 (154)
56 3o3m_A Alpha subunit 2-hydroxy 26.3 1.5E+02 0.005 21.9 5.5 51 17-71 152-202 (408)
57 3b02_A Transcriptional regulat 26.1 57 0.002 20.0 2.8 36 38-73 134-173 (195)
58 3t72_q RNA polymerase sigma fa 25.9 86 0.0029 19.3 3.7 58 20-81 8-81 (99)
59 3o3m_B Beta subunit 2-hydroxya 25.7 1.5E+02 0.005 21.7 5.4 51 17-71 132-182 (385)
60 3e7l_A Transcriptional regulat 25.7 46 0.0016 18.3 2.2 26 5-32 3-28 (63)
61 1ft9_A Carbon monoxide oxidati 25.7 88 0.003 19.4 3.7 35 39-73 159-197 (222)
62 2a9o_A Response regulator; ess 25.5 84 0.0029 16.8 3.2 27 26-52 85-111 (120)
63 3gja_A CYTC3; halogenase, beta 25.3 95 0.0032 22.0 4.2 23 38-60 26-48 (319)
64 1za0_A Possible acyl-[acyl-car 25.2 27 0.00091 26.0 1.4 24 58-81 94-119 (275)
65 1isp_A Lipase; alpha/beta hydr 25.2 75 0.0026 18.6 3.2 32 17-48 51-82 (181)
66 2h1i_A Carboxylesterase; struc 25.0 82 0.0028 18.8 3.3 29 19-47 94-131 (226)
67 2qr3_A Two-component system re 24.8 83 0.0028 17.4 3.2 29 24-52 91-119 (140)
68 4dnp_A DAD2; alpha/beta hydrol 24.8 57 0.002 19.3 2.5 30 18-47 73-102 (269)
69 2jba_A Phosphate regulon trans 24.6 92 0.0032 16.9 4.3 29 24-52 87-115 (127)
70 3ih6_A Putative zinc protease; 24.6 57 0.0019 20.0 2.6 36 18-60 97-132 (197)
71 4ga2_A E3 SUMO-protein ligase 24.6 41 0.0014 19.8 1.9 25 35-61 1-25 (150)
72 1vcv_A Probable deoxyribose-ph 24.5 1.5E+02 0.0052 21.0 5.2 42 17-58 96-139 (226)
73 3ryp_A Catabolite gene activat 24.4 72 0.0024 19.3 3.0 38 36-74 161-202 (210)
74 1deb_A APC protein, adenomatou 24.3 35 0.0012 20.9 1.5 11 12-22 3-13 (54)
75 4f0j_A Probable hydrolytic enz 24.2 83 0.0028 19.1 3.2 32 17-48 96-127 (315)
76 2zay_A Response regulator rece 24.0 74 0.0025 17.9 2.9 40 24-66 93-132 (147)
77 1dcf_A ETR1 protein; beta-alph 24.0 69 0.0023 17.9 2.7 27 26-52 96-122 (136)
78 1tmy_A CHEY protein, TMY; chem 23.9 69 0.0024 17.3 2.6 28 25-52 87-114 (120)
79 3hsq_A Acyl-[acyl-carrier-prot 23.9 49 0.0017 22.3 2.4 33 9-41 219-257 (259)
80 1n08_A Putative riboflavin kin 23.8 59 0.002 22.3 2.8 20 14-33 129-148 (163)
81 2uw1_A Desaturase, plastid del 23.8 29 0.00099 26.8 1.4 24 58-81 105-130 (338)
82 2r11_A Carboxylesterase NP; 26 23.8 80 0.0027 20.0 3.3 30 18-47 117-146 (306)
83 3h5i_A Response regulator/sens 23.7 59 0.002 18.4 2.4 39 27-68 92-130 (140)
84 3bwg_A Uncharacterized HTH-typ 23.4 1.7E+02 0.0059 19.6 5.2 50 14-71 7-61 (239)
85 3ibt_A 1H-3-hydroxy-4-oxoquino 23.2 1.1E+02 0.0036 18.3 3.6 30 18-47 70-99 (264)
86 1dlc_A Delta-endotoxin CRYIIIA 23.0 1E+02 0.0035 24.5 4.4 28 40-67 57-94 (584)
87 2pl1_A Transcriptional regulat 22.9 98 0.0034 16.6 3.6 28 25-52 84-111 (121)
88 2pfz_A Putative exported prote 22.9 1.9E+02 0.0063 19.8 6.3 52 27-81 249-300 (301)
89 2qvb_A Haloalkane dehalogenase 22.8 90 0.0031 18.8 3.2 30 18-47 81-111 (297)
90 3nku_A DRRA, SIDM; posttransla 22.7 33 0.0011 25.3 1.4 34 11-44 121-154 (213)
91 1ho8_A Vacuolar ATP synthase s 22.6 97 0.0033 24.9 4.2 52 2-60 290-348 (480)
92 2hwg_A Phosphoenolpyruvate-pro 22.6 1.4E+02 0.0048 24.0 5.1 48 12-62 364-412 (575)
93 4drw_A Protein S100-A10/annexi 22.5 18 0.00062 23.1 -0.0 36 13-52 2-39 (121)
94 2gkg_A Response regulator homo 22.4 97 0.0033 16.5 3.1 28 25-52 91-118 (127)
95 1mj5_A 1,3,4,6-tetrachloro-1,4 22.3 1E+02 0.0035 18.8 3.4 29 18-46 82-111 (302)
96 3bdi_A Uncharacterized protein 22.2 1.1E+02 0.0038 17.5 3.4 30 18-47 83-112 (207)
97 3r40_A Fluoroacetate dehalogen 22.0 98 0.0034 18.6 3.3 29 18-46 87-115 (306)
98 1p2x_A RNG2 protein, RAS GTPas 22.0 42 0.0014 22.3 1.7 18 42-59 132-149 (159)
99 3d7r_A Esterase; alpha/beta fo 21.8 1.1E+02 0.0038 20.2 3.8 34 13-46 142-175 (326)
100 3hdv_A Response regulator; PSI 21.8 78 0.0027 17.6 2.6 36 25-63 93-128 (136)
101 4ghk_A Gamma-glutamyl phosphat 21.6 58 0.002 24.3 2.6 32 33-70 18-49 (444)
102 1f6f_A Placental lactogen; 4-h 21.2 61 0.0021 22.6 2.5 22 15-36 122-143 (199)
103 4g9e_A AHL-lactonase, alpha/be 21.1 1E+02 0.0035 18.3 3.2 30 18-47 77-106 (279)
104 3r4i_A Citrate lyase; TIM beta 20.8 1.9E+02 0.0064 21.3 5.2 39 21-59 96-135 (339)
105 3u65_B TP33 protein; tetratric 20.8 1.4E+02 0.0048 21.2 4.4 39 28-68 270-308 (328)
106 1jbe_A Chemotaxis protein CHEY 20.7 1.2E+02 0.004 16.6 3.6 28 25-52 91-118 (128)
107 1hr6_A Alpha-MPP, mitochondria 20.6 1.1E+02 0.0039 21.5 3.8 20 43-62 348-367 (475)
108 3my7_A Alcohol dehydrogenase/a 20.3 70 0.0024 23.9 2.8 33 45-78 5-37 (452)
109 3qit_A CURM TE, polyketide syn 20.3 1.2E+02 0.004 17.8 3.3 30 18-47 78-107 (286)
110 3hss_A Putative bromoperoxidas 20.1 1.2E+02 0.004 18.5 3.3 30 18-47 93-122 (293)
No 1
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=77.96 E-value=2.8 Score=24.02 Aligned_cols=44 Identities=9% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhccc
Q 034824 27 TVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGS 73 (82)
Q Consensus 27 TVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~~~ 73 (82)
.+...++-|..|++.-.|+.+++.+ .+++++.+|++..+...+.
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~---~i~~~~~~~~~~~~~~~~~ 138 (143)
T 2qv0_A 95 HAVEAFELEAFDYILKPYQESRIIN---MLQKLTTAWEQQNNAAEGH 138 (143)
T ss_dssp THHHHHHTTCSEEEESSCCHHHHHH---HHHHHHHHHHHC-------
T ss_pred HHHHHHhCCcceEEeCCCCHHHHHH---HHHHHHHHHHhccchhhcc
Confidence 3456678899999999999988764 5788889998887765543
No 2
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=73.78 E-value=5.9 Score=22.77 Aligned_cols=45 Identities=9% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHhccCccceeeeecc-CHHHHHhHHHHHHHHHHHHHHhhhhhcc
Q 034824 25 METVVKVLQPGPLGIIEHKF-SAEEVRQASATVERAVQNWLRNAYQEQG 72 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkF-s~~EI~~A~atv~rAV~nWrrn~~lE~~ 72 (82)
-+.+...++-|.-|++.-.| +.+++.+ .+++++..|+.......+
T Consensus 93 ~~~~~~~~~~ga~~~l~Kp~~~~~~l~~---~i~~~l~~~~~~~~~~~~ 138 (144)
T 3kht_A 93 DDRAKQCMAAGASSVVDKSSNNVTDFYG---RIYAIFSYWLTVNHCQEG 138 (144)
T ss_dssp HHHHHHHHHTTCSEEEECCTTSHHHHHH---HHHHHHHHHHHTSCCC--
T ss_pred HHHHHHHHHcCCCEEEECCCCcHHHHHH---HHHHHHHHHHhccCCCCC
Confidence 46677888999999999999 9888865 578889999987665544
No 3
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=70.37 E-value=7.4 Score=21.98 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhh
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQ 69 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~l 69 (82)
.+.....++-|..|.+.-.|+.+++.+ .+++++.+|.....+
T Consensus 104 ~~~~~~~~~~g~~~~l~kP~~~~~l~~---~i~~~~~~~~~~~~~ 145 (149)
T 1k66_A 104 PKDIEICYSYSISSYIVKPLEIDRLTE---TVQTFIKYWLDIVVL 145 (149)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHHHHH---HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHH---HHHHHHHHhhhhccC
Confidence 356677788899999999999998864 578888888765543
No 4
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=70.04 E-value=7.8 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=32.9
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhh
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQ 69 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~l 69 (82)
.+.+...++-|.-|++...|+.+++.+ .++++..+|+....+
T Consensus 97 ~~~~~~~~~~g~~~~l~kP~~~~~l~~---~i~~~~~~~~~~~~l 138 (140)
T 1k68_A 97 EDDIFHSYDLHVNCYITKSANLSQLFQ---IVKGIEEFWLSTATL 138 (140)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHHHHH---HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhchhheecCCCCHHHHHH---HHHHHHHHHcccccC
Confidence 356677788899999999999998865 577888888765543
No 5
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=69.38 E-value=14 Score=21.45 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHHHHHHhccCc-cceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhcccchhh
Q 034824 24 EMETVVKVLQPG-PLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILK 77 (82)
Q Consensus 24 dvETVi~VLQPG-PlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~~~~ilk 77 (82)
+.+.+...++-| ..|.+.-.|+.+++.+ .+++++..++....+.+...-++
T Consensus 90 ~~~~~~~~~~~g~~~~~l~kP~~~~~L~~---~i~~~~~~~~~~~~~~~~~~~~~ 141 (154)
T 2rjn_A 90 DAQATIDAVNRGKISRFLLKPWEDEDVFK---VVEKGLQLAFLREENLRLQEETE 141 (154)
T ss_dssp GHHHHHHHHHTTCCSEEEESSCCHHHHHH---HHHHHHHHHHHHHHTTSCCC---
T ss_pred CHHHHHHHHhccchheeeeCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778877 8899999999998765 46777777776665555444443
No 6
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=62.39 E-value=9.7 Score=21.57 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=30.1
Q ss_pred HHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhccc
Q 034824 26 ETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGS 73 (82)
Q Consensus 26 ETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~~~ 73 (82)
+.....++-|.-|++...|+.+|+.+ .+++++..||++..-+..+
T Consensus 94 ~~~~~~~~~g~~~~l~kp~~~~~l~~---~i~~~~~~~~~~~~~~~~~ 138 (142)
T 3cg4_A 94 DAKMIGLQEYVVDYITKPFDNEDLIE---KTTFFMGFVRNQTGNEGHH 138 (142)
T ss_dssp CCSSTTGGGGEEEEEESSCCHHHHHH---HHHHHHHHHHHC-------
T ss_pred HHHHHHHhcCccEEEeCCCCHHHHHH---HHHHHHHHHhhcccccccc
Confidence 34455677788899999999998764 5788888999887766544
No 7
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=62.06 E-value=19 Score=20.20 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=32.0
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQ 71 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~ 71 (82)
.+.+...++-|.-|++...|+.+++.+ .+++++..++....-.+
T Consensus 94 ~~~~~~~~~~g~~~~l~kp~~~~~l~~---~i~~~~~~~~~~~~~~~ 137 (140)
T 3cg0_A 94 VETFQRAKRVNPFGYLAKPVAADTLHR---SIEMAIHKKKLEEGHHH 137 (140)
T ss_dssp HHHHHHHHTTCCSEEEEESCCHHHHHH---HHHHHHHHHHHCC----
T ss_pred HHHHHHHHhcCCCEEEeCCCCHHHHHH---HHHHHHhccccCCCCCC
Confidence 456678889999999999999998764 57778877776654433
No 8
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=61.20 E-value=1.7 Score=25.44 Aligned_cols=9 Identities=56% Similarity=1.180 Sum_probs=0.0
Q ss_pred cCccceeee
Q 034824 33 QPGPLGIIE 41 (82)
Q Consensus 33 QPGPlGIvE 41 (82)
-|||+|++-
T Consensus 21 iPGPVG~~a 29 (40)
T 1f8v_D 21 IPGPVGTIS 29 (40)
T ss_dssp ---------
T ss_pred CCCchhHHH
Confidence 499999874
No 9
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=60.01 E-value=23 Score=21.82 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhh
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAY 68 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~ 68 (82)
+.+.+...++-|..|.+.-.|+.+++.. .+++++..+++...
T Consensus 96 ~~~~~~~~~~~ga~~~l~KP~~~~~L~~---~i~~~~~~~~~~~~ 137 (205)
T 1s8n_A 96 QRDLVERARDAGAMAYLVKPFSISDLIP---AIELAVSRFREITA 137 (205)
T ss_dssp GHHHHHTTGGGSCEEEEEESCCHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCcEEEeCCCCHHHHHH---HHHHHHHHHHHHHH
Confidence 4567788899999999999999998875 46666666654443
No 10
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=59.84 E-value=6.6 Score=22.35 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=26.4
Q ss_pred HHHHHHhccCccceeeeecc-CHHHHHhHHHHHHHHHHHHHHh
Q 034824 25 METVVKVLQPGPLGIIEHKF-SAEEVRQASATVERAVQNWLRN 66 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkF-s~~EI~~A~atv~rAV~nWrrn 66 (82)
.+.+...++-|..|++.-.| +.+++.+ .+++++..|++|
T Consensus 98 ~~~~~~~~~~g~~~~l~kP~~~~~~l~~---~i~~~~~~~~~~ 137 (137)
T 2pln_A 98 SEEEVHAFEQGADDYIAKPYRSIKALVA---RIEARLRFWGSN 137 (137)
T ss_dssp HHHHHHHHHTTCSEEEESSCSCHHHHHH---HHHHHTC-----
T ss_pred HHHHHHHHHcCCceeeeCCCCCHHHHHH---HHHHHHhhhcCC
Confidence 35667788889999999999 9888865 466666666554
No 11
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=58.55 E-value=15 Score=21.41 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhh
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAY 68 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~ 68 (82)
.+.+...++-|..|.+...|+.+|+.+ .++++...|.....
T Consensus 103 ~~~~~~~~~~ga~~~l~KP~~~~~L~~---~i~~~~~~~~~~~~ 143 (149)
T 1i3c_A 103 EDDVIASYELHVNCYLTKSRNLKDLFK---MVQGIESFWLETVT 143 (149)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHHHHH---HHHHHHHHHTTTSC
T ss_pred hHHHHHHHHcCCcEEEECCCCHHHHHH---HHHHHHHHHhhhhc
Confidence 356778888999999999999999875 46777788865443
No 12
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=55.82 E-value=2.2 Score=25.42 Aligned_cols=9 Identities=44% Similarity=1.132 Sum_probs=7.2
Q ss_pred cCccceeee
Q 034824 33 QPGPLGIIE 41 (82)
Q Consensus 33 QPGPlGIvE 41 (82)
-|||+|++-
T Consensus 21 iPGPVG~~a 29 (44)
T 1nov_D 21 IPGPVGVAA 29 (44)
T ss_pred CCCchhHHH
Confidence 499999863
No 13
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=55.10 E-value=25 Score=20.37 Aligned_cols=44 Identities=9% Similarity=0.317 Sum_probs=33.3
Q ss_pred HHHHHHHhccCc-cceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhh
Q 034824 24 EMETVVKVLQPG-PLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQE 70 (82)
Q Consensus 24 dvETVi~VLQPG-PlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE 70 (82)
+.+.+...++-| .-|.+.-.|+.+++.++ +++++..++.....+
T Consensus 87 ~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~---i~~~l~~~~~~~~~~ 131 (151)
T 3kcn_A 87 DLTTAMEAVNEGQVFRFLNKPCQMSDIKAA---INAGIKQYDLVTSKE 131 (151)
T ss_dssp GHHHHHHHHHHTCCSEEEESSCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCeeEEEcCCCCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 556777888889 88999999999988754 667777776654443
No 14
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=55.07 E-value=22 Score=26.30 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccCcccee-eeeccCHHHHHhHHHHHHHHHH
Q 034824 21 LETEMETVVKVLQPGPLGI-IEHKFSAEEVRQASATVERAVQ 61 (82)
Q Consensus 21 lEqdvETVi~VLQPGPlGI-vEHkFs~~EI~~A~atv~rAV~ 61 (82)
++.|+..+..++.-|+.|| +-+-=|.+|+++|++.|+.+-.
T Consensus 121 ~~~ql~Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~~~~ 162 (324)
T 2xz9_A 121 FKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEEVKA 162 (324)
T ss_dssp HHHHHHHHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999997 5555688999999999876655
No 15
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=51.28 E-value=27 Score=19.76 Aligned_cols=32 Identities=9% Similarity=0.347 Sum_probs=25.7
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhHHHH
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQASAT 55 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A~at 55 (82)
+.+.+...++-|.-|.+...|+.+++..+=..
T Consensus 88 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~ 119 (143)
T 3jte_A 88 DLDNAILAMKEGAFEYLRKPVTAQDLSIAINN 119 (143)
T ss_dssp CHHHHHHHHHTTCSEEEESSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcceeEeCCCCHHHHHHHHHH
Confidence 35667788899999999999999998865433
No 16
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=50.93 E-value=32 Score=22.16 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhccCccceeeeeccCH-------------HHHHhHHHHHHHHHHHH
Q 034824 16 RLFRQLETEMETVVKVLQPGPLGIIEHKFSA-------------EEVRQASATVERAVQNW 63 (82)
Q Consensus 16 ~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~-------------~EI~~A~atv~rAV~nW 63 (82)
.||.||-+++++++.+.+ |. .+-+ +=.-.+++|+.||++|-
T Consensus 6 eLiq~lP~~l~q~~q~v~----~~---t~qda~pnV~kDLdn~~acL~k~~~t~~rat~sL 59 (73)
T 2az0_A 6 ALIQELPDRIQTAVEAAM----GM---SYQDAPNNVRRDLDNLHACLNKAKLTVSRMVTSL 59 (73)
T ss_dssp HHHHTHHHHHHHHHHTGG----GS---CCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HH---HHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999887 22 2222 22456889999999875
No 17
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=48.25 E-value=17 Score=22.29 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhh
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNA 67 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~ 67 (82)
.+.+...++-|..|.+.-.|+.+++.. ++++++..+++..
T Consensus 91 ~~~~~~a~~~ga~~~l~KP~~~~~L~~---~l~~~~~~~~~~~ 130 (196)
T 1qo0_D 91 PAVLSQIIELECHGVITQPLDAHRVLP---VLVSARRISEEMA 130 (196)
T ss_dssp HHHHHHHHHHTCSEEEESSCCGGGHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCeeEecCcCHHHHHH---HHHHHHHHHHHHH
Confidence 456777888899999999999988764 4566666665443
No 18
>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U
Probab=48.15 E-value=2.5 Score=31.36 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=31.2
Q ss_pred ccCHHHHHhHHHHHHH------HHHHHHHhhh---hhcccchhhhhhhC
Q 034824 43 KFSAEEVRQASATVER------AVQNWLRNAY---QEQGSEILKDYIDK 82 (82)
Q Consensus 43 kFs~~EI~~A~atv~r------AV~nWrrn~~---lE~~~~ilkdyi~k 82 (82)
-||-+|+..|--+.+- +||-.|+|.. |+.|-.-||.|..|
T Consensus 72 GFsl~Elk~aGi~~~~A~tiGI~VD~RR~nkS~Esl~~Nv~rLk~y~sk 120 (206)
T 4a18_U 72 GFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSK 120 (206)
T ss_dssp SBCHHHHHHHTCCHHHHHHHTBCBCTTCCCCSHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHcCCCHHHhcccCeeeccccccccHhHHHHHHHHHHHHHHh
Confidence 5999999999665554 5899999964 45677789999765
No 19
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=47.97 E-value=30 Score=19.49 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=29.7
Q ss_pred HHHHH-HhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhh
Q 034824 25 METVV-KVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQ 69 (82)
Q Consensus 25 vETVi-~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~l 69 (82)
-+.+. ..++-|..|++...|+.+++.+ .+++++.+++.+..-
T Consensus 92 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~---~i~~~l~~~~~~~~~ 134 (140)
T 3grc_A 92 EGELEFNSQPLAVSTWLEKPIDENLLIL---SLHRAIDNMAEGKEG 134 (140)
T ss_dssp HHHHHHCCTTTCCCEEECSSCCHHHHHH---HHHHHHHHHC-----
T ss_pred hHHHHHHhhhcCCCEEEeCCCCHHHHHH---HHHHHHHhcCCCCcc
Confidence 34445 7889999999999999999865 477888877665443
No 20
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=46.99 E-value=2.3 Score=31.51 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=31.7
Q ss_pred ccCHHHHHhHHHHHHH------HHHHHHHhhh---hhcccchhhhhhhC
Q 034824 43 KFSAEEVRQASATVER------AVQNWLRNAY---QEQGSEILKDYIDK 82 (82)
Q Consensus 43 kFs~~EI~~A~atv~r------AV~nWrrn~~---lE~~~~ilkdyi~k 82 (82)
-||-+|+..|--+.+- +||-.|+|.. |+.|-.-||.|..|
T Consensus 74 GFsl~ELk~aGi~~k~A~tiGI~VD~RR~nks~Esl~~NVqrLk~y~sk 122 (199)
T 3u5e_L 74 GFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSK 122 (199)
T ss_dssp CCCHHHHHHTTCCHHHHHHTTBCCCTTCCCCBHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHcCCCHHHhcccCeeeccccccccHHHHHHHHHHHHHHHhh
Confidence 5999999999666555 4899999964 56677789999765
No 21
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=44.99 E-value=20 Score=20.04 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhh
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNA 67 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~ 67 (82)
+.+.....++-|.-|++.-.|+.+++.+ .+++++..++...
T Consensus 95 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~---~i~~~~~~~~~~~ 135 (143)
T 3cnb_A 95 TDDNVSRIVALGAETCFGKPLNFTLLEK---TIKQLVEQKKATS 135 (143)
T ss_dssp CHHHHHHHHHTTCSEEEESSCCHHHHHH---HHHHHHHTTC---
T ss_pred CHHHHHHHHhcCCcEEEeCCCCHHHHHH---HHHHHHHhhcccc
Confidence 3456677888999999999999998865 4666666655443
No 22
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=44.45 E-value=11 Score=21.95 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhh
Q 034824 27 TVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQE 70 (82)
Q Consensus 27 TVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE 70 (82)
.+...+.-|..|.+.-.|+.+++.++ +++++..+.++..-+
T Consensus 91 ~~~~~~~~ga~~~l~KP~~~~~L~~~---i~~~~~~~~~~~~~~ 131 (141)
T 3cu5_A 91 YLKAAIKFRAIRYVEKPIDPSEIMDA---LKQSIQTVLQHQAQQ 131 (141)
T ss_dssp CC------CCCEEECSSCCHHHHHHH---HHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCccEEEeCCCCHHHHHHH---HHHHHHHHHHHhchh
Confidence 44566778899999999999998754 666777766554433
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.65 E-value=9.5 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=20.3
Q ss_pred hhhhhhcCC------hHHHHHHHHHHHHHHHHhcc
Q 034824 5 LSRLANALP------FSRLFRQLETEMETVVKVLQ 33 (82)
Q Consensus 5 ~~~~~~~lP------fs~l~RQlEqdvETVi~VLQ 33 (82)
++.+..+|| ...++..-..++|+||+.|-
T Consensus 17 I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 17 ISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455677788 34455566679999999874
No 24
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=42.33 E-value=62 Score=22.12 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=35.6
Q ss_pred hhhcCC-hHHHHHHHHHHHHHHHHhccCccceeeeecc-CHHHHHh----HHHHHHHHHHHHHHhhhhhc
Q 034824 8 LANALP-FSRLFRQLETEMETVVKVLQPGPLGIIEHKF-SAEEVRQ----ASATVERAVQNWLRNAYQEQ 71 (82)
Q Consensus 8 ~~~~lP-fs~l~RQlEqdvETVi~VLQPGPlGIvEHkF-s~~EI~~----A~atv~rAV~nWrrn~~lE~ 71 (82)
..+..| +.++.++|.+++. . +.|| .++ |..|+.+ .+.||++|++.-...-.+++
T Consensus 9 ~~~~~~~y~~i~~~l~~~I~---~-~~~g------~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 9 AAPRILKHQVVRAELDRMLD---G-MRIG------DPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp -----CHHHHHHHHHHHHHH---H-CCTT------CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHHHh---C-CCCC------CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 334456 6677777887775 4 8888 356 7777766 58999999987666555544
No 25
>3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp}
Probab=41.54 E-value=43 Score=19.81 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 13 PFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 13 Pfs~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+++..+..+...++.+.+-+.++|+.++-|-+-..
T Consensus 74 ~~~~~~~d~~~~~~~l~~~~~~~~i~l~G~S~Gg~ 108 (275)
T 3h04_A 74 SLDCIIEDVYASFDAIQSQYSNCPIFTFGRSSGAY 108 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTSCEEEEEETHHHH
T ss_pred ccchhHHHHHHHHHHHHhhCCCCCEEEEEecHHHH
Confidence 47778888888888888888999999999987543
No 26
>3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis}
Probab=40.98 E-value=29 Score=20.71 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-|.++|+.++-|-+-..
T Consensus 89 ~~~~~~d~~~~~~~l~~~~~~l~G~S~Gg~ 118 (270)
T 3llc_A 89 ISRWLEEALAVLDHFKPEKAILVGSSMGGW 118 (270)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeChHHH
Confidence 455567888899999999999999987553
No 27
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=40.88 E-value=7.7 Score=26.23 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=15.6
Q ss_pred hhcCChHHHHHHHHHHHHH
Q 034824 9 ANALPFSRLFRQLETEMET 27 (82)
Q Consensus 9 ~~~lPfs~l~RQlEqdvET 27 (82)
.+-+||.+|+|++=||.-+
T Consensus 2 I~klPF~RLVREI~~~~~~ 20 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTT 20 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTT
T ss_pred CCccchHHHHHHHHHHhcC
Confidence 3578999999999998743
No 28
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.81 E-value=63 Score=19.94 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=35.8
Q ss_pred hhcCC-hHHHHHHHHHHHHHHHHhccCccceeeeecc-CHHH----HHhHHHHHHHHHHHHHHhhhhh
Q 034824 9 ANALP-FSRLFRQLETEMETVVKVLQPGPLGIIEHKF-SAEE----VRQASATVERAVQNWLRNAYQE 70 (82)
Q Consensus 9 ~~~lP-fs~l~RQlEqdvETVi~VLQPGPlGIvEHkF-s~~E----I~~A~atv~rAV~nWrrn~~lE 70 (82)
.+..| +-|+..++.+.+.+ ..|+||= ++ |..| .-=.+.||++|+..-...-.++
T Consensus 10 ~s~~PlY~QI~~~i~~~I~~--G~l~pG~------~LPser~La~~~gVSr~tVReAl~~L~~eGlv~ 69 (134)
T 4ham_A 10 KSQLPIYEQIVQKIKEQVVK--GVLQEGE------KILSIREFASRIGVNPNTVSKAYQELERQEVII 69 (134)
T ss_dssp TSSSCHHHHHHHHHHHHHHH--TSSCTTC------EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCCCCCC------CCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 45678 66777777777643 5789993 34 4434 4446899999998766555444
No 29
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.66 E-value=51 Score=18.83 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=24.1
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQAS 53 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~ 53 (82)
.+.....++-|..|.+.-.|+.+++..+=
T Consensus 88 ~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 116 (137)
T 3cfy_A 88 VDLAVNLIQKGAEDFLEKPINADRLKTSV 116 (137)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHCCccEEEeCCCCHHHHHHHH
Confidence 46677888899999999999999987653
No 30
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti}
Probab=40.09 E-value=28 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++.+|+..+++-+..+|++++-|-+-..
T Consensus 117 ~~~~~~dl~~~l~~l~~~~v~lvG~S~Gg~ 146 (314)
T 3kxp_A 117 ANDYADDIAGLIRTLARGHAILVGHSLGAR 146 (314)
T ss_dssp HHHHHHHHHHHHHHHTSSCEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEECchHH
Confidence 566778889999999999999999987653
No 31
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=38.02 E-value=54 Score=18.41 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWL 64 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWr 64 (82)
.+.....++-|..|.+.-.|+.+|+.++ +++++..++
T Consensus 87 ~~~~~~~~~~ga~~~l~KP~~~~~L~~~---i~~~~~~~~ 123 (132)
T 3crn_A 87 LENSVFSLNAGADAYIMKPVNPRDLLEK---IKEKLDEQE 123 (132)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHhccchhhccCCCCHHHHHHH---HHHHHhccc
Confidence 4566778889999999999999998764 555555443
No 32
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=37.72 E-value=48 Score=18.89 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhHH
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQAS 53 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A~ 53 (82)
+.+.+...+..|..|.+.-.|+.+++.++=
T Consensus 86 ~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l 115 (136)
T 2qzj_A 86 EDQSILNALNSGGDDYLIKPLNLEILYAKV 115 (136)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 346677888999999999999999987653
No 33
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=36.82 E-value=8.2 Score=24.46 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=23.4
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhccCccceeeeeccCHHHHH
Q 034824 8 LANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVR 50 (82)
Q Consensus 8 ~~~~lPfs~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~EI~ 50 (82)
+.+-+||.+|+|++-||.- +| ..+.|+.+-+.
T Consensus 3 LI~klPF~RLVREI~~~~~-------~~----~~~R~q~~Al~ 34 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFT-------RG----VDFNWQAQALL 34 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHH-------SS----CCCEECHHHHH
T ss_pred CcccccHHHHHHHHHHHhc-------cC----ccccccHHHHH
Confidence 4567899999999999874 22 35688876554
No 34
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=35.07 E-value=40 Score=19.10 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHhccC-ccceeeeeccCHHHHHhHHHHHHHHHHHHHH
Q 034824 26 ETVVKVLQP-GPLGIIEHKFSAEEVRQASATVERAVQNWLR 65 (82)
Q Consensus 26 ETVi~VLQP-GPlGIvEHkFs~~EI~~A~atv~rAV~nWrr 65 (82)
+.++..+.- |..|.+.-.|+.+++..+ ++++...|+.
T Consensus 85 ~~~~~~~~~~ga~~~l~KP~~~~~L~~~---i~~~~~~~~~ 122 (139)
T 2jk1_A 85 ASMMAAINDAGIHQFLTKPWHPEQLLSS---ARNAARMFTL 122 (139)
T ss_dssp HHHHHHHHHTTCCEEEESSCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhccCCCCHHHHHHH---HHHHHHHHHH
Confidence 455566654 588999999999988764 5566655543
No 35
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=34.06 E-value=7.9 Score=22.99 Aligned_cols=8 Identities=50% Similarity=1.315 Sum_probs=6.6
Q ss_pred cCccceee
Q 034824 33 QPGPLGII 40 (82)
Q Consensus 33 QPGPlGIv 40 (82)
-|||+|.+
T Consensus 21 iPGPVG~~ 28 (44)
T 2z2q_B 21 IPGPIGVA 28 (44)
T ss_pred CCCchhHH
Confidence 49999975
No 36
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=33.03 E-value=63 Score=17.70 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHH
Q 034824 23 TEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNW 63 (82)
Q Consensus 23 qdvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nW 63 (82)
+.++.+...++-|..|.+...|+.+++.++ ++++...|
T Consensus 89 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~---l~~~~~~~ 126 (135)
T 3eqz_A 89 HSAETLALSCGLNVINTFTKPINTEVLTCF---LTSLSNRQ 126 (135)
T ss_dssp HHHHHHHHHTTCEEEEEEESSCCHHHHHHH---HHHHSCCC
T ss_pred HHHHHHHHHcCCCcceeeCCCCCHHHHHHH---HHHHHhhc
Confidence 345777888999999999999999998765 44444433
No 37
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=31.93 E-value=55 Score=25.55 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=23.9
Q ss_pred eeeeccCHHHHHhHHHHH----------HHHHHHHHHhhh
Q 034824 39 IIEHKFSAEEVRQASATV----------ERAVQNWLRNAY 68 (82)
Q Consensus 39 IvEHkFs~~EI~~A~atv----------~rAV~nWrrn~~ 68 (82)
+|..|.++..+..|.+.+ .+|+++|..|-+
T Consensus 58 lIdq~I~~~~~~~a~~~l~gl~~~~~~y~~~~~~w~~np~ 97 (589)
T 3eb7_A 58 LINQKIAEYARAKALAELEGLGNNYQLYLTALEEWQENPS 97 (589)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999988888876 578999987643
No 38
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=31.81 E-value=40 Score=18.65 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=22.8
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.....++-|..|.+...|+.+|+.++
T Consensus 87 ~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 114 (126)
T 1dbw_A 87 VPMAVEAMKAGAVDFIEKPFEDTVIIEA 114 (126)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHhCHHHheeCCCCHHHHHHH
Confidence 4567778888999999999999988654
No 39
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=30.61 E-value=74 Score=17.76 Aligned_cols=28 Identities=7% Similarity=-0.046 Sum_probs=24.5
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.....++-|.-|.+.-.|+.+|+.++
T Consensus 101 ~~~~~~~~~~g~~~~l~kP~~~~~L~~~ 128 (143)
T 2qvg_A 101 SKDKLAFESLNIRGHLIKPLDYGEAIKL 128 (143)
T ss_dssp HHHHHHHTTTTCCEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 4667788999999999999999999877
No 40
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=30.13 E-value=10 Score=23.73 Aligned_cols=30 Identities=30% Similarity=0.645 Sum_probs=21.9
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhccCccceeeeeccCHHHHH
Q 034824 8 LANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVR 50 (82)
Q Consensus 8 ~~~~lPfs~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~EI~ 50 (82)
+.+-+||.+|+|.+-||.. | .+.|+.+-+.
T Consensus 3 li~k~PF~RLVRei~~~~~--------~-----~~R~q~~Al~ 32 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFK--------T-----DLRFQSSAVM 32 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTC--------S-----SCEECHHHHH
T ss_pred ccccchHHHHHHHHHHHcC--------c-----cccccHHHHH
Confidence 3466899999999988853 2 4788876543
No 41
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A
Probab=29.80 E-value=45 Score=20.29 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcc--CccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQ--PGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQ--PGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-|. ++|++++-|-+-..
T Consensus 90 ~~~~~~d~~~~i~~l~~~~~~i~l~G~S~Gg~ 121 (270)
T 3rm3_A 90 FHDWVASVEEGYGWLKQRCQTIFVTGLSMGGT 121 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEEcHhHH
Confidence 4555668888888888 99999999987543
No 42
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=29.71 E-value=40 Score=22.92 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=22.8
Q ss_pred HHHHHHHHhccCccc---eeeeeccCHHHHHhHHHHH
Q 034824 23 TEMETVVKVLQPGPL---GIIEHKFSAEEVRQASATV 56 (82)
Q Consensus 23 qdvETVi~VLQPGPl---GIvEHkFs~~EI~~A~atv 56 (82)
++++.+++.+.=|-| -+|.|.|+-+|+.+|=..+
T Consensus 297 ~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l 333 (346)
T 4a2c_A 297 QEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDI 333 (346)
T ss_dssp HHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHH
Confidence 456666666555533 3589999999988775443
No 43
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism, lectin-like beta sandwich, jelly roll, toxin; 2.20A {Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=29.58 E-value=63 Score=27.30 Aligned_cols=30 Identities=13% Similarity=0.391 Sum_probs=22.6
Q ss_pred eeeeccCHHHHHhHHHHHH----------HHHHHHHHhhh
Q 034824 39 IIEHKFSAEEVRQASATVE----------RAVQNWLRNAY 68 (82)
Q Consensus 39 IvEHkFs~~EI~~A~atv~----------rAV~nWrrn~~ 68 (82)
+|..|+++..+..|.+.++ +|+++|..|.+
T Consensus 100 LIDQKIse~vrN~AiAeLqGLqn~lk~Yq~ALe~W~~NPn 139 (633)
T 1i5p_A 100 FLNQRLNTDTLARVNAELIGLQANIREFNQQVDNFLNPTQ 139 (633)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3567888888888777665 78999987644
No 44
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=29.04 E-value=36 Score=18.72 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=21.3
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.....++-|..|.+.-.|+.+|+.++
T Consensus 87 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (124)
T 1srr_A 87 LDMIQESKELGALTHFAKPFDIDEIRDA 114 (124)
T ss_dssp HHHHHHHHHHTCCCEEESSCCHHHHHHH
T ss_pred hHHHHHHHhcChHhhccCCCCHHHHHHH
Confidence 4456677778888888888888887654
No 45
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified}
Probab=28.73 E-value=64 Score=19.51 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-.|+..+++-+..+|+.+|-|-+-..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lvGhS~Gg~ 108 (309)
T 3u1t_A 79 LQDHVAYMDGFIDALGLDDMVLVIHDWGSV 108 (309)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCcHHH
Confidence 556667888899999999999999987553
No 46
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=28.69 E-value=49 Score=18.80 Aligned_cols=37 Identities=8% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWL 64 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWr 64 (82)
.+.+...++-|..|.+.-.|+.+++.++ ++++...|+
T Consensus 93 ~~~~~~~~~~ga~~~l~KP~~~~~L~~~---l~~~~~~~~ 129 (133)
T 2r25_B 93 DSNIKECLESGMNGFLSKPIKRPKLKTI---LTEFCAAYQ 129 (133)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHH---HHHHCTTC-
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHH---HHHHHHhhc
Confidence 3556778888999999999999888654 555555554
No 47
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A
Probab=28.65 E-value=68 Score=19.37 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSA 46 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~ 46 (82)
+.++-+|+..+++-+...|+.++-|-+-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 109 (299)
T 3g9x_A 81 FDDHVRYLDAFIEALGLEEVVLVIHDWGS 109 (299)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCccH
Confidence 56677888999999999999999998765
No 48
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=28.18 E-value=27 Score=24.18 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=23.9
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhccCccceeeeeccCHHHHHh
Q 034824 8 LANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQ 51 (82)
Q Consensus 8 ~~~~lPfs~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~EI~~ 51 (82)
+.+-+||.+|+|++-||.-+ | ..+.|+.+-|..
T Consensus 61 LIpKlPF~RLVREI~~~~~~-------~----~~~Rfq~~Al~A 93 (140)
T 3nqu_A 61 LIRKLPFSRLAREICVKFTR-------G----VDFNWQAQALLA 93 (140)
T ss_dssp CSCTTHHHHHHHHHHHHHHT-------T----CCCEECHHHHHH
T ss_pred ccccccHHHHHHHHHHHhcc-------c----ccceecHHHHHH
Confidence 45678999999999998742 1 357788765543
No 49
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=27.84 E-value=78 Score=18.01 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-+...|+.++-|-+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ 92 (131)
T 2dst_A 63 PEELAHFVAGFAVMMNLGAPWVLLRGLGLA 92 (131)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHcCCCccEEEEEChHHH
Confidence 777888999999999999999999988653
No 50
>1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32
Probab=27.50 E-value=82 Score=19.70 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 13 PFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 13 Pfs~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+++..+.++.+.++.+++-+.+.++.++-|-+-..
T Consensus 92 ~~~~~~~d~~~~~~~l~~~~~~~~i~l~G~S~GG~ 126 (273)
T 1vkh_A 92 TNPRNLYDAVSNITRLVKEKGLTNINMVGHSVGAT 126 (273)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTCCCEEEEEETHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCcCcEEEEEeCHHHH
Confidence 47778888888888888888999999999976543
No 51
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=27.45 E-value=89 Score=17.86 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=29.8
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHh
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRN 66 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn 66 (82)
-+.+...++-|..+++.-.|+.+++.++ ++++...|..-
T Consensus 101 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~---i~~~~~~~~~~ 139 (152)
T 3heb_A 101 QREIQRCYDLGANVYITKPVNYENFANA---IRQLGLFFSVM 139 (152)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHHHHHH---HHHHHHHHTTS
T ss_pred HHHHHHHHHCCCcEEEeCCCCHHHHHHH---HHHHHHHHHHc
Confidence 4566778888999999999999998765 55666677543
No 52
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=27.08 E-value=51 Score=22.16 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 034824 14 FSRLFRQLETEMETVVKVLQ 33 (82)
Q Consensus 14 fs~l~RQlEqdvETVi~VLQ 33 (82)
+..|+.|+++|++..-+.|.
T Consensus 111 le~L~~qI~~D~~~ar~~l~ 130 (147)
T 1nb0_A 111 LESLISAIQGDIEEAKKRLE 130 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999998874
No 53
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis}
Probab=26.78 E-value=72 Score=18.85 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-|...|+.++-|-+-..
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~lvG~S~Gg~ 103 (278)
T 3oos_A 74 MTETIKDLEAIREALYINKWGFAGHSAGGM 103 (278)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeecccHH
Confidence 567778889999999999999999987654
No 54
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica}
Probab=26.69 E-value=79 Score=18.70 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-+..+|+.++-|-+-..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ 110 (282)
T 3qvm_A 81 LEGYAKDVEEILVALDLVNVSIIGHSVSSI 110 (282)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEecccHH
Confidence 455667888889999999999999987653
No 55
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.28 E-value=55 Score=19.07 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHH
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLR 65 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrr 65 (82)
+.+.+...++-|.-+.+.-.|+.+++.++ +++++..+++
T Consensus 92 ~~~~~~~~~~~g~~~~l~KP~~~~~l~~~---i~~~l~~~~~ 130 (154)
T 3gt7_A 92 DPRDVVRSLECGADDFITKPCKDVVLASH---VKRLLSGVKR 130 (154)
T ss_dssp SHHHHHHHHHHCCSEEEESSCCHHHHHHH---HHHHHHHTCC
T ss_pred ChHHHHHHHHCCCCEEEeCCCCHHHHHHH---HHHHHHHHHh
Confidence 34566778888999999999999988764 6666666544
No 56
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=26.27 E-value=1.5e+02 Score=21.92 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 034824 17 LFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQ 71 (82)
Q Consensus 17 l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~ 71 (82)
-+.-+..+++.+++.|. -+.-.|||++.+++|-....+.-..||+=..|=+
T Consensus 152 ~~~y~~~el~~l~~~LE----~~tG~ki~~e~L~eai~~~N~~r~~~~~~~~l~~ 202 (408)
T 3o3m_A 152 RIDYIKAQFEEAIKQLE----IISGKKFDPKKFEEVMKISAENGRLWKYSMSLPA 202 (408)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHTCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777887775 3556899999999999999999999998776643
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.10 E-value=57 Score=19.95 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.8
Q ss_pred eeeeeccCHHHHHh----HHHHHHHHHHHHHHhhhhhccc
Q 034824 38 GIIEHKFSAEEVRQ----ASATVERAVQNWLRNAYQEQGS 73 (82)
Q Consensus 38 GIvEHkFs~~EI~~----A~atv~rAV~nWrrn~~lE~~~ 73 (82)
|++.-++|-+||-+ .+.||.|++..|++.-.++...
T Consensus 134 ~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 134 QGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp TEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 44778899999987 5789999999999988877543
No 58
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.92 E-value=86 Score=19.28 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhccCccceeee--------eccCHHHHHhH--------HHHHHHHHHHHHHhhhhhcccchhhhhhh
Q 034824 20 QLETEMETVVKVLQPGPLGIIE--------HKFSAEEVRQA--------SATVERAVQNWLRNAYQEQGSEILKDYID 81 (82)
Q Consensus 20 QlEqdvETVi~VLQPGPlGIvE--------HkFs~~EI~~A--------~atv~rAV~nWrrn~~lE~~~~ilkdyi~ 81 (82)
++.++++..++-|.|-===|+. +.+|-+||-+. +....+|...-|.... +..|++|+.
T Consensus 8 el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~----~~~l~~~~~ 81 (99)
T 3t72_q 8 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR----SEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3445566666666554333333 34688999654 4556677777776554 446777763
No 59
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=25.68 E-value=1.5e+02 Score=21.75 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 034824 17 LFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQ 71 (82)
Q Consensus 17 l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~ 71 (82)
-+.-+..+++.+++.|. -+.-+|||++.+++|-....+.-..||+-..|=.
T Consensus 132 ~~~y~~~el~~l~~~LE----~~tG~~i~~e~L~eai~~~N~~r~~~~~~~~l~~ 182 (385)
T 3o3m_B 132 GVKYLISEYKGVKRELE----EICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAY 182 (385)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667777788887775 3566899999999999999999999988766543
No 60
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.67 E-value=46 Score=18.34 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=18.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHHHHhc
Q 034824 5 LSRLANALPFSRLFRQLETEMETVVKVL 32 (82)
Q Consensus 5 ~~~~~~~lPfs~l~RQlEqdvETVi~VL 32 (82)
++.+....|+.+.+.++|+++ +.++|
T Consensus 3 ~~~~~~~~~l~~~l~~~E~~~--i~~aL 28 (63)
T 3e7l_A 3 LSYLLKIKELKEAKKEFEKIF--IEEKL 28 (63)
T ss_dssp -CTTTTCSCHHHHHHHHHHHH--HHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHH--HHHHH
Confidence 456778889999999998864 44555
No 61
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.67 E-value=88 Score=19.43 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=29.3
Q ss_pred eeeeccCHHHHHh----HHHHHHHHHHHHHHhhhhhccc
Q 034824 39 IIEHKFSAEEVRQ----ASATVERAVQNWLRNAYQEQGS 73 (82)
Q Consensus 39 IvEHkFs~~EI~~----A~atv~rAV~nWrrn~~lE~~~ 73 (82)
-+.-.+|-+||-+ .+.||.|++..|++.-.++...
T Consensus 159 ~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~ 197 (222)
T 1ft9_A 159 IVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQG 197 (222)
T ss_dssp CCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECS
T ss_pred EEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcC
Confidence 4678899999887 5789999999999998887644
No 62
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=25.45 E-value=84 Score=16.78 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHhccCccceeeeeccCHHHHHhH
Q 034824 26 ETVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 26 ETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
+.....++-|..|.+...|+.+++.++
T Consensus 85 ~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (120)
T 2a9o_A 85 FDKVIGLELGADDYVTKPFSNRELQAR 111 (120)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHhCCHhheEeCCCCHHHHHHH
Confidence 445566777888888888888887654
No 63
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*
Probab=25.33 E-value=95 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=17.8
Q ss_pred eeeeeccCHHHHHhHHHHHHHHH
Q 034824 38 GIIEHKFSAEEVRQASATVERAV 60 (82)
Q Consensus 38 GIvEHkFs~~EI~~A~atv~rAV 60 (82)
=+++.-|+++|+.+.++.+.+.+
T Consensus 26 v~i~~~l~~~~v~~l~~~i~~~l 48 (319)
T 3gja_A 26 IGPVKIFEPEEMTRRWNIIRRQL 48 (319)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHHHHh
Confidence 35678888888888888887755
No 64
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=25.22 E-value=27 Score=26.05 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhhhcccc--hhhhhhh
Q 034824 58 RAVQNWLRNAYQEQGSE--ILKDYID 81 (82)
Q Consensus 58 rAV~nWrrn~~lE~~~~--ilkdyi~ 81 (82)
.+...|-+.|+-|.|.| .|.+|+.
T Consensus 94 ~~w~~w~~~WtaEE~rHg~aL~~YL~ 119 (275)
T 1za0_A 94 DWWGRWLGRWTAEEHLHAIALREYLV 119 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 46778999999999988 8999973
No 65
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A
Probab=25.20 E-value=75 Score=18.59 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhccCccceeeeeccCHHH
Q 034824 17 LFRQLETEMETVVKVLQPGPLGIIEHKFSAEE 48 (82)
Q Consensus 17 l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~E 48 (82)
-+.++.++++.+++-+.+.|+.+|-|-+-..=
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~ 82 (181)
T 1isp_A 51 NGPVLSRFVQKVLDETGAKKVDIVAHSMGGAN 82 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEEEEETHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEEEECccHHH
Confidence 35677888888999899999999999887643
No 66
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14
Probab=25.00 E-value=82 Score=18.75 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhc---------cCccceeeeeccCHH
Q 034824 19 RQLETEMETVVKVL---------QPGPLGIIEHKFSAE 47 (82)
Q Consensus 19 RQlEqdvETVi~VL---------QPGPlGIvEHkFs~~ 47 (82)
.++.++++.++.++ .+.+++++-|-+-..
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~ 131 (226)
T 2h1i_A 94 EDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGAN 131 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCcccEEEEEEChHHH
Confidence 34455555555555 678999999977653
No 67
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.83 E-value=83 Score=17.39 Aligned_cols=29 Identities=7% Similarity=0.335 Sum_probs=23.8
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
+.+.+...++-|.-|++...|+.+++.++
T Consensus 91 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 119 (140)
T 2qr3_A 91 DIDLAVRGIKEGASDFVVKPWDNQKLLET 119 (140)
T ss_dssp GHHHHHHHHHTTCCEEEEESCCHHHHHHH
T ss_pred CHHHHHHHHHcCchheeeCCCCHHHHHHH
Confidence 45667788888999999999999988764
No 68
>4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A
Probab=24.78 E-value=57 Score=19.26 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-+..+|+.++-|-+-..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~GhS~Gg~ 102 (269)
T 4dnp_A 73 LDPYVDDLLHILDALGIDCCAYVGHSVSAM 102 (269)
T ss_dssp SHHHHHHHHHHHHHTTCCSEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEccCHHHH
Confidence 455667888888889999999999976544
No 69
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.61 E-value=92 Score=16.88 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
+.+.....++-|..|.+.-.|+.+|+.++
T Consensus 87 ~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 115 (127)
T 2jba_A 87 EEEDRVRGLETGADDCITKPFSPKELVAR 115 (127)
T ss_dssp HHHHHHTTCCCSCSEEEEESCCHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEEeCCCCHHHHHHH
Confidence 34667888999999999999999998754
No 70
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=24.59 E-value=57 Score=20.00 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV 60 (82)
..++++.+...++-|. ++.||++|+..|+..+....
T Consensus 97 ~~~~~~~i~~~l~~l~-------~~~it~~el~~ak~~~~~~~ 132 (197)
T 3ih6_A 97 QDKALQTLTATLESLS-------SKPFSQEELERARSKWLTAW 132 (197)
T ss_dssp HHHHHHHHHHHHHCTT-------TSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHH
Confidence 3445555555555443 45689999999999887654
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=24.56 E-value=41 Score=19.80 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=10.1
Q ss_pred ccceeeeeccCHHHHHhHHHHHHHHHH
Q 034824 35 GPLGIIEHKFSAEEVRQASATVERAVQ 61 (82)
Q Consensus 35 GPlGIvEHkFs~~EI~~A~atv~rAV~ 61 (82)
||||.+-. +..++.+|-+..++|+.
T Consensus 1 G~LG~~~~--~~~~~e~ai~~~~~a~~ 25 (150)
T 4ga2_A 1 GPLGSMRR--SKADVERYIASVQGSTP 25 (150)
T ss_dssp ------CC--CHHHHHHHHHHHHHHSC
T ss_pred CHhHHHHH--HcChHHHHHHHHHHhcc
Confidence 78887753 45555555555555543
No 72
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=24.54 E-value=1.5e+02 Score=20.96 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhccCccce-eeeecc-CHHHHHhHHHHHHH
Q 034824 17 LFRQLETEMETVVKVLQPGPLG-IIEHKF-SAEEVRQASATVER 58 (82)
Q Consensus 17 l~RQlEqdvETVi~VLQPGPlG-IvEHkF-s~~EI~~A~atv~r 58 (82)
-...+++|+..|.+.-...++= |+|.-+ +++||..|-.....
T Consensus 96 ~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~e 139 (226)
T 1vcv_A 96 RWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAE 139 (226)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 3578899999999998655777 888754 78888877544443
No 73
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=24.37 E-value=72 Score=19.35 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=30.3
Q ss_pred cceeeeeccCHHHHHh----HHHHHHHHHHHHHHhhhhhcccc
Q 034824 36 PLGIIEHKFSAEEVRQ----ASATVERAVQNWLRNAYQEQGSE 74 (82)
Q Consensus 36 PlGIvEHkFs~~EI~~----A~atv~rAV~nWrrn~~lE~~~~ 74 (82)
|-| +.-++|-+||-+ .+.||.|+...|++.-.++...+
T Consensus 161 ~~~-~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 202 (210)
T 3ryp_A 161 PDG-MQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 202 (210)
T ss_dssp TTE-EEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCc-eEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCC
Confidence 444 466899999987 68899999999999887776544
No 74
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.28 E-value=35 Score=20.89 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.5
Q ss_pred CChHHHHHHHH
Q 034824 12 LPFSRLFRQLE 22 (82)
Q Consensus 12 lPfs~l~RQlE 22 (82)
-++.||+||+|
T Consensus 3 asYdQL~~QVe 13 (54)
T 1deb_A 3 ASYDQLLKQVE 13 (54)
T ss_dssp CCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 35788888887
No 75
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}
Probab=24.15 E-value=83 Score=19.05 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhccCccceeeeeccCHHH
Q 034824 17 LFRQLETEMETVVKVLQPGPLGIIEHKFSAEE 48 (82)
Q Consensus 17 l~RQlEqdvETVi~VLQPGPlGIvEHkFs~~E 48 (82)
-+.++-+|+..+++-+...|+.++-|-+-..=
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~ 127 (315)
T 4f0j_A 96 SFQQLAANTHALLERLGVARASVIGHSMGGML 127 (315)
T ss_dssp CHHHHHHHHHHHHHHTTCSCEEEEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEecHHHHH
Confidence 36677788889999999999999999876543
No 76
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.03 E-value=74 Score=17.93 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHh
Q 034824 24 EMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRN 66 (82)
Q Consensus 24 dvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn 66 (82)
+.+.+...++-|..|++...|+.+++.+ .+++++..+++.
T Consensus 93 ~~~~~~~~~~~g~~~~l~kp~~~~~L~~---~i~~~~~~~~~~ 132 (147)
T 2zay_A 93 TAKEEAQLLDMGFIDFIAKPVNAIRLSA---RIKRVLKLLYED 132 (147)
T ss_dssp CHHHHHHHHHHTCSEEEESSCCHHHHHH---HHHHHHHHHC--
T ss_pred CHHHHHHHHhCCCCEEEeCCCCHHHHHH---HHHHHHHHHHhc
Confidence 3456677788899999999999998765 466677666554
No 77
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=23.95 E-value=69 Score=17.90 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHhccCccceeeeeccCHHHHHhH
Q 034824 26 ETVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 26 ETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
+.+...++-|..|.+.-.|+.+++.++
T Consensus 96 ~~~~~~~~~ga~~~l~KP~~~~~L~~~ 122 (136)
T 1dcf_A 96 STKEKCMSFGLDGVLLKPVSLDNIRDV 122 (136)
T ss_dssp HHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred HHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 344556777888888888888887643
No 78
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=23.93 E-value=69 Score=17.31 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.7
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.....++-|..|.+.-.|+.+++.++
T Consensus 87 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (120)
T 1tmy_A 87 QAMVIEAIKAGAKDFIVKPFQPSRVVEA 114 (120)
T ss_dssp HHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHhCcceeEeCCCCHHHHHHH
Confidence 4556677778888888888888877654
No 79
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=23.89 E-value=49 Score=22.26 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=20.9
Q ss_pred hhcCChHHHHHHHHH------HHHHHHHhccCccceeee
Q 034824 9 ANALPFSRLFRQLET------EMETVVKVLQPGPLGIIE 41 (82)
Q Consensus 9 ~~~lPfs~l~RQlEq------dvETVi~VLQPGPlGIvE 41 (82)
++.+++.+.+++||+ +++.++..+...--||+-
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~~~~ 257 (259)
T 3hsq_A 219 HSGISTRKALDELEASGNLIEQVKYIIKFFRDSDRGVTN 257 (259)
T ss_dssp SSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCBCC
T ss_pred HcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCC
Confidence 344677888888776 466666666655555543
No 80
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=23.84 E-value=59 Score=22.29 Aligned_cols=20 Identities=10% Similarity=0.471 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 034824 14 FSRLFRQLETEMETVVKVLQ 33 (82)
Q Consensus 14 fs~l~RQlEqdvETVi~VLQ 33 (82)
+..|+.|+++|++..-+.|.
T Consensus 129 le~L~~qI~~D~~~ar~~l~ 148 (163)
T 1n08_A 129 LDKLIEDIHTDIRVALNSMD 148 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999988873
No 81
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=23.83 E-value=29 Score=26.84 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhcccc--hhhhhhh
Q 034824 58 RAVQNWLRNAYQEQGSE--ILKDYID 81 (82)
Q Consensus 58 rAV~nWrrn~~lE~~~~--ilkdyi~ 81 (82)
.+...|-+.|+-|.|.| .|.+|+.
T Consensus 105 ~~w~~w~~~WtaEEnrHg~aL~~YL~ 130 (338)
T 2uw1_A 105 SAWAMWTRAWTAEENRHGDLLNKYLY 130 (338)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 45667999999999988 8999974
No 82
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis}
Probab=23.78 E-value=80 Score=19.95 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++.+|+..+++-|..+|+.++-|-+-..
T Consensus 117 ~~~~~~~l~~~l~~l~~~~~~lvG~S~Gg~ 146 (306)
T 2r11_A 117 RTDYANWLLDVFDNLGIEKSHMIGLSLGGL 146 (306)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceeEEEECHHHH
Confidence 456677889999999999999999987543
No 83
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.68 E-value=59 Score=18.44 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=29.6
Q ss_pred HHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhh
Q 034824 27 TVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAY 68 (82)
Q Consensus 27 TVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~ 68 (82)
.+...++-|.-|.+.-.|+.+++.++ +++++..|++...
T Consensus 92 ~~~~~~~~g~~~~l~KP~~~~~l~~~---i~~~l~~~~~~~~ 130 (140)
T 3h5i_A 92 VVEKIRSVTAYGYVMKSATEQVLITI---VEMALRLYEANVH 130 (140)
T ss_dssp CCGGGGGSCEEEEEETTCCHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHhCCCcEEEeCCCCHHHHHHH---HHHHHHHHHhhcC
Confidence 34567788999999999999988764 6777777766543
No 84
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.37 E-value=1.7e+02 Score=19.59 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHhccCccceeeeecc-CHHHHHh----HHHHHHHHHHHHHHhhhhhc
Q 034824 14 FSRLFRQLETEMETVVKVLQPGPLGIIEHKF-SAEEVRQ----ASATVERAVQNWLRNAYQEQ 71 (82)
Q Consensus 14 fs~l~RQlEqdvETVi~VLQPGPlGIvEHkF-s~~EI~~----A~atv~rAV~nWrrn~~lE~ 71 (82)
+.++..++.+++.+ ..++|| .++ |..|+-+ .+.||++|+..-...-.+++
T Consensus 7 ~~~i~~~l~~~I~~--g~~~~g------~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~ 61 (239)
T 3bwg_A 7 YQQIATEIETYIEE--HQLQQG------DKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ 61 (239)
T ss_dssp -CHHHHHHHHHHHH--TTCCTT------CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHh--CCCCCC------CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 34555555555543 368888 356 6666665 47899999998766655543
No 85
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}
Probab=23.20 E-value=1.1e+02 Score=18.34 Aligned_cols=30 Identities=3% Similarity=0.064 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-|..+|+.+|-|-+-..
T Consensus 70 ~~~~~~~~~~~l~~l~~~~~~lvGhS~Gg~ 99 (264)
T 3ibt_A 70 SQTLAQDLLAFIDAKGIRDFQMVSTSHGCW 99 (264)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEETTHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecchhHH
Confidence 455667888899999999999999987643
No 86
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=22.98 E-value=1e+02 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=22.2
Q ss_pred eeeccCHHHHHhHHHHHH----------HHHHHHHHhh
Q 034824 40 IEHKFSAEEVRQASATVE----------RAVQNWLRNA 67 (82)
Q Consensus 40 vEHkFs~~EI~~A~atv~----------rAV~nWrrn~ 67 (82)
|+.|.++..+..|.+.++ +|++.|..|-
T Consensus 57 IdqkI~~~~~~~a~~~l~gL~~~~~~Y~~al~~w~~np 94 (584)
T 1dlc_A 57 MDQKIADYAKNKALAELQGLQNNVEDYVSALSSWQKNP 94 (584)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457899999988888765 6888998764
No 87
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.95 E-value=98 Score=16.60 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.....++-|..|.+...|+.+|+..+
T Consensus 84 ~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 111 (121)
T 2pl1_A 84 WQDKVEVLSAGADDYVTKPFHIEEVMAR 111 (121)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHcCccceEECCCCHHHHHHH
Confidence 3566778888999999999999888754
No 88
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=22.93 E-value=1.9e+02 Score=19.76 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=33.8
Q ss_pred HHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhhcccchhhhhhh
Q 034824 27 TVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYID 81 (82)
Q Consensus 27 TVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE~~~~ilkdyi~ 81 (82)
..++.|+-. |+.=+.++++|...-++.++...+.|..... +....+++.|..
T Consensus 249 ~~~~~l~~~--G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~ 300 (301)
T 2pfz_A 249 WYKEQLAKN--GMAIIAPTAELKSGLTEVGKRMLDDWLKKAG-ADGQAMIDAYRK 300 (301)
T ss_dssp HHHHHHHHT--TCEEECCCHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHT
T ss_pred HHHHHHHHC--CCEEecCCHHHHHHHHHHHHHHHHHHHHHhC-hhHHHHHHHHhc
Confidence 445555543 6666779998888888888888888865432 223446666643
No 89
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Probab=22.81 E-value=90 Score=18.79 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhccC-ccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQP-GPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQP-GPlGIvEHkFs~~ 47 (82)
+..+-+|+..+++-|.. .|+.++-|-+-..
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~lvG~S~Gg~ 111 (297)
T 2qvb_A 81 YGEQRDFLFALWDALDLGDHVVLVLHDWGSA 111 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCchHH
Confidence 45666788889999998 9999999987543
No 90
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=22.67 E-value=33 Score=25.34 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=19.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhccCccceeeeecc
Q 034824 11 ALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKF 44 (82)
Q Consensus 11 ~lPfs~l~RQlEqdvETVi~VLQPGPlGIvEHkF 44 (82)
.-|..+.+..|=|.+=|.-|-+-|.||||--..+
T Consensus 121 vkpvfdalnnlcqriftasnqiypdpiginpsrl 154 (213)
T 3nku_A 121 VKPVFDALNNLCQRIFTASNQIYPDPIGINPSRL 154 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CCCEEE
T ss_pred hhhHHHHHHHHHHHHHhccccccCCCCCCCHHhh
Confidence 3466777888999999999999999999966544
No 91
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=22.62 E-value=97 Score=24.88 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=30.9
Q ss_pred ccchhhhhhcCChH-----HHHHHHH--HHHHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHH
Q 034824 2 PASLSRLANALPFS-----RLFRQLE--TEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60 (82)
Q Consensus 2 ~~S~~~~~~~lPfs-----~l~RQlE--qdvETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV 60 (82)
|++++-|++++--+ .++.|+= ..+=.+++.|+ +-||+|+||.+.=..+....
T Consensus 290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~-------~rk~~Dedl~edl~~L~e~L 348 (480)
T 1ho8_A 290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS-------ERKYSDEELRQDISNLKEIL 348 (480)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH-------SSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh-------hCCCCcHHHHHHHHHHHHHH
Confidence 66777777777643 4444421 11223333343 67899999998866665544
No 92
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=22.60 E-value=1.4e+02 Score=24.01 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHHHHHhccCcccee-eeeccCHHHHHhHHHHHHHHHHH
Q 034824 12 LPFSRLFRQLETEMETVVKVLQPGPLGI-IEHKFSAEEVRQASATVERAVQN 62 (82)
Q Consensus 12 lPfs~l~RQlEqdvETVi~VLQPGPlGI-vEHkFs~~EI~~A~atv~rAV~n 62 (82)
|-.++++ +.++..+...+.-|++|| +-+-=|.+|+++|++.|+.+-..
T Consensus 364 l~~p~if---~~QlrAi~rA~~~G~~~Im~PmV~t~~E~~~a~~~v~~~~~~ 412 (575)
T 2hwg_A 364 MDRREIL---RDQLRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQE 412 (575)
T ss_dssp TTCHHHH---HHHHHHHHHHTTSSCEEEEESSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccChHHH---HHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 3345554 567888888888899997 66667899999999998776654
No 93
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=22.50 E-value=18 Score=23.06 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHHHHHhccC--ccceeeeeccCHHHHHhH
Q 034824 13 PFSRLFRQLETEMETVVKVLQP--GPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 13 Pfs~l~RQlEqdvETVi~VLQP--GPlGIvEHkFs~~EI~~A 52 (82)
|+...-.+||+.+|+++.+-+= +==| +.|.+|++++
T Consensus 2 pl~~M~s~lE~~ie~l~~~F~~yd~ddG----~Is~~EL~~~ 39 (121)
T 4drw_A 2 PLGSMPSQMEHAMETMMFTFHKFAGDKG----YLTKEDLRVL 39 (121)
T ss_dssp -----CCSHHHHHHHHHHTTGGGSCTTC----SCCHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHHHcCCCC----EEcHHHHHHH
Confidence 3333446889999999999873 1123 6788998876
No 94
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.43 E-value=97 Score=16.54 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=22.3
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.....++-|.-|++.-.|+.+++.++
T Consensus 91 ~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 118 (127)
T 2gkg_A 91 GFAQHRKLKAHADEYVAKPVDADQLVER 118 (127)
T ss_dssp GHHHHHHSTTCCSEEEESSCCHHHHHHH
T ss_pred chhHHHHHHhCcchheeCCCCHHHHHHH
Confidence 4566778888999999999998887654
No 95
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A
Probab=22.28 E-value=1e+02 Score=18.75 Aligned_cols=29 Identities=7% Similarity=0.283 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhccC-ccceeeeeccCH
Q 034824 18 FRQLETEMETVVKVLQP-GPLGIIEHKFSA 46 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQP-GPlGIvEHkFs~ 46 (82)
+.++-+|+..+++-|.. +|+.+|-|-+-.
T Consensus 82 ~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg 111 (302)
T 1mj5_A 82 YAEHRDYLDALWEALDLGDRVVLVVHDWGS 111 (302)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEECCcc
Confidence 45566788888888998 999999997654
No 96
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728}
Probab=22.24 E-value=1.1e+02 Score=17.54 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-++++.+++-+.+.+++++-|-+-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~ 112 (207)
T 3bdi_A 83 LKHAAEFIRDYLKANGVARSVIMGASMGGG 112 (207)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECccHH
Confidence 566677888888889999999999987754
No 97
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Probab=21.99 E-value=98 Score=18.63 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSA 46 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~ 46 (82)
+.++-+|+..+++-|..+|+.+|-|-+-.
T Consensus 87 ~~~~~~~~~~~l~~l~~~~~~lvGhS~Gg 115 (306)
T 3r40_A 87 KRAMAKQLIEAMEQLGHVHFALAGHNRGA 115 (306)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecchH
Confidence 56777888999999999999999998754
No 98
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=21.98 E-value=42 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=14.7
Q ss_pred eccCHHHHHhHHHHHHHH
Q 034824 42 HKFSAEEVRQASATVERA 59 (82)
Q Consensus 42 HkFs~~EI~~A~atv~rA 59 (82)
-+||++|++.++..+.+|
T Consensus 132 ~~fseeql~~~~~~l~~~ 149 (159)
T 1p2x_A 132 LSFTDEDVSIIVRRLRQS 149 (159)
T ss_dssp CCCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 489999999998877644
No 99
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp}
Probab=21.85 E-value=1.1e+02 Score=20.19 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHHHHHHhccCccceeeeeccCH
Q 034824 13 PFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSA 46 (82)
Q Consensus 13 Pfs~l~RQlEqdvETVi~VLQPGPlGIvEHkFs~ 46 (82)
+++..+..+...++.+++-+.|.++.|+-|-+-.
T Consensus 142 ~~~~~~~d~~~~~~~l~~~~~~~~i~l~G~S~GG 175 (326)
T 3d7r_A 142 HIDDTFQAIQRVYDQLVSEVGHQNVVVMGDGSGG 175 (326)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEEEETHHH
T ss_pred CchHHHHHHHHHHHHHHhccCCCcEEEEEECHHH
Confidence 5777888888888888888899999999997643
No 100
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.76 E-value=78 Score=17.58 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNW 63 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nW 63 (82)
.+.+...++-|.-|.+...|+.+++.++ ++++...+
T Consensus 93 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~---i~~~~~~~ 128 (136)
T 3hdv_A 93 VEEAVDVMHLGVVDFLLKPVDLGKLLEL---VNKELKIG 128 (136)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHH---HHHHHC--
T ss_pred hHHHHHHHhCCcceEEeCCCCHHHHHHH---HHHHhcCc
Confidence 4567778889999999999999988754 44444433
No 101
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=21.63 E-value=58 Score=24.30 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=20.3
Q ss_pred cCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhhhh
Q 034824 33 QPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQE 70 (82)
Q Consensus 33 QPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~lE 70 (82)
||+...+ .+++.+|=+..++|...|++-..-|
T Consensus 18 ~p~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~ 49 (444)
T 4ghk_A 18 GPGSMDI------DQYMTDVGRRARRASRSIARASTAA 49 (444)
T ss_dssp -----CH------HHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred CCccccH------HHHHHHHHHHHHHHHHHhhhCCHHH
Confidence 6776643 4789999888999999998654433
No 102
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=21.22 E-value=61 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhccCcc
Q 034824 15 SRLFRQLETEMETVVKVLQPGP 36 (82)
Q Consensus 15 s~l~RQlEqdvETVi~VLQPGP 36 (82)
+.-+++|++.+++++.-+|||-
T Consensus 122 ~ek~~~L~egi~~i~~~~~~g~ 143 (199)
T 1f6f_A 122 KEKAKVLVDGVEVIQKRIHPGE 143 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcccCc
Confidence 4447889999999999999986
No 103
>4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A
Probab=21.11 E-value=1e+02 Score=18.26 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+..+-+|+..+++-+...|+.+|-|-+-..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ 106 (279)
T 4g9e_A 77 MEGYADAMTEVMQQLGIADAVVFGWSLGGH 106 (279)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECchHH
Confidence 556667788888889999999999987654
No 104
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=20.80 E-value=1.9e+02 Score=21.26 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccCccceeeeeccC-HHHHHhHHHHHHHH
Q 034824 21 LETEMETVVKVLQPGPLGIIEHKFS-AEEVRQASATVERA 59 (82)
Q Consensus 21 lEqdvETVi~VLQPGPlGIvEHkFs-~~EI~~A~atv~rA 59 (82)
.++|++.++..--+||.||+==|.+ .+|++.+.+.+..+
T Consensus 96 ~~~DL~al~~~~~~g~~~I~LPKves~~dv~~~~~~l~~~ 135 (339)
T 3r4i_A 96 WRDDVRLILRAAKRAPAYITLPKIRHVHDAAEMVAFIEAT 135 (339)
T ss_dssp HHHHHHHHHHHCSSCCSCEEECC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCCCCEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4577888877766899999999984 56788877766543
No 105
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=20.77 E-value=1.4e+02 Score=21.22 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHhccCccceeeeeccCHHHHHhHHHHHHHHHHHHHHhhh
Q 034824 28 VVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAY 68 (82)
Q Consensus 28 Vi~VLQPGPlGIvEHkFs~~EI~~A~atv~rAV~nWrrn~~ 68 (82)
.++-|.- -|+.-+.+|++|+.+-++.++..++.|...+.
T Consensus 270 ~~~~l~~--~Gv~v~~~~~e~~~~~~~~~~~v~~~~~~~~~ 308 (328)
T 3u65_B 270 CSNNIQK--AGVSIVHLTPQEIQEWRTEFAADVKRIQARLP 308 (328)
T ss_dssp HHHHHHH--TTCEEECCCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHH--CCCEEEeCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443 26777889999999988888888887765543
No 106
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=20.68 E-value=1.2e+02 Score=16.56 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.1
Q ss_pred HHHHHHhccCccceeeeeccCHHHHHhH
Q 034824 25 METVVKVLQPGPLGIIEHKFSAEEVRQA 52 (82)
Q Consensus 25 vETVi~VLQPGPlGIvEHkFs~~EI~~A 52 (82)
.+.+...++-|.-|.+.-.|+.+|+.++
T Consensus 91 ~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 118 (128)
T 1jbe_A 91 KENIIAAAQAGASGYVVKPFTAATLEEK 118 (128)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHhCcCceeecCCCHHHHHHH
Confidence 4567778889999999999999988764
No 107
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=20.64 E-value=1.1e+02 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=16.3
Q ss_pred ccCHHHHHhHHHHHHHHHHH
Q 034824 43 KFSAEEVRQASATVERAVQN 62 (82)
Q Consensus 43 kFs~~EI~~A~atv~rAV~n 62 (82)
.||++|+.+|++.+......
T Consensus 348 ~~t~~El~~ak~~l~~~~~~ 367 (475)
T 1hr6_A 348 RLTEDEVSRAKNQLKSSLLM 367 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 48999999999888776643
No 108
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=20.31 E-value=70 Score=23.85 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=23.8
Q ss_pred CHHHHHhHHHHHHHHHHHHHHhhhhhcccchhhh
Q 034824 45 SAEEVRQASATVERAVQNWLRNAYQEQGSEILKD 78 (82)
Q Consensus 45 s~~EI~~A~atv~rAV~nWrrn~~lE~~~~ilkd 78 (82)
|.+|+.+|=+..++|-..|++ .+.|+...+|+.
T Consensus 5 ~~~~v~~av~~A~~A~~~w~~-~~~~~R~~il~~ 37 (452)
T 3my7_A 5 NMAELDAMIARVKKAQEEFAT-YSQEQVDKIFRA 37 (452)
T ss_dssp SHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 678888998888999999964 344555555543
No 109
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=20.25 E-value=1.2e+02 Score=17.83 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-+..+|+.++-|-+-..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ 107 (286)
T 3qit_A 78 SLTFLAQIDRVIQELPDQPLLLVGHSMGAM 107 (286)
T ss_dssp HHHHHHHHHHHHHHSCSSCEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCHHHH
Confidence 456677888899999889999999988654
No 110
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A
Probab=20.08 E-value=1.2e+02 Score=18.49 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhccCccceeeeeccCHH
Q 034824 18 FRQLETEMETVVKVLQPGPLGIIEHKFSAE 47 (82)
Q Consensus 18 ~RQlEqdvETVi~VLQPGPlGIvEHkFs~~ 47 (82)
+.++-+|+..+++-|...|+.+|-|-+-..
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~lvGhS~Gg~ 122 (293)
T 3hss_A 93 TQTMVADTAALIETLDIAPARVVGVSMGAF 122 (293)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeeCccHH
Confidence 456667888889999989999999987553
Done!