Query 034827
Match_columns 82
No_of_seqs 23 out of 25
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02806 complex I subunit 100.0 9.6E-51 2.1E-55 269.8 9.6 78 1-78 1-78 (81)
2 PF06374 NDUF_C2: NADH-ubiquin 98.0 3.3E-05 7.1E-10 54.2 7.6 61 6-66 28-89 (117)
3 KOG4516 NADH:ubiquinone oxidor 93.1 0.53 1.2E-05 33.6 6.5 52 11-62 35-86 (118)
4 PF13436 Gly-zipper_OmpA: Glyc 83.1 5 0.00011 27.3 5.5 27 35-61 77-103 (118)
5 PF15110 TMEM141: TMEM141 prot 80.9 10 0.00022 26.2 6.4 55 3-60 32-86 (94)
6 COG5336 Uncharacterized protei 71.1 14 0.00031 26.3 5.2 39 3-49 53-93 (116)
7 PF02841 GBP_C: Guanylate-bind 69.3 10 0.00022 28.7 4.4 55 5-59 3-59 (297)
8 cd03682 ClC_sycA_like ClC sycA 68.8 7.2 0.00016 30.4 3.6 61 5-65 2-64 (378)
9 PF00893 Multi_Drug_Res: Small 67.0 24 0.00052 22.5 5.2 36 11-49 38-73 (93)
10 PF09796 QCR10: Ubiquinol-cyto 64.9 7.5 0.00016 24.8 2.5 32 3-34 15-54 (64)
11 PF11457 DUF3021: Protein of u 61.0 15 0.00033 24.2 3.6 39 7-47 52-90 (136)
12 PF08149 BING4CT: BING4CT (NUC 59.8 2.2 4.7E-05 28.6 -0.6 17 32-48 19-35 (80)
13 COG1563 Predicted subunit of t 58.9 8.6 0.00019 26.2 2.1 26 3-30 60-85 (87)
14 TIGR00701 conserved hypothetic 56.6 66 0.0014 22.5 6.7 40 3-47 55-95 (142)
15 PRK10650 multidrug efflux syst 54.5 53 0.0011 22.3 5.4 39 8-49 41-79 (109)
16 PF06897 DUF1269: Protein of u 54.2 31 0.00066 23.2 4.2 34 3-49 2-36 (102)
17 PRK10510 putative outer membra 53.5 56 0.0012 24.2 5.8 25 37-61 69-93 (219)
18 PRK10535 macrolide transporter 52.2 31 0.00067 28.9 4.7 44 3-46 581-625 (648)
19 PF05957 DUF883: Bacterial pro 52.0 17 0.00038 23.0 2.6 20 30-49 71-91 (94)
20 PRK11404 putative PTS system 51.7 33 0.00072 28.6 4.8 31 29-62 438-468 (482)
21 PF13056 DUF3918: Protein of u 50.4 35 0.00076 20.5 3.6 29 35-63 7-35 (43)
22 PF05597 Phasin: Poly(hydroxya 48.9 59 0.0013 22.9 5.1 34 35-68 21-67 (132)
23 PF04632 FUSC: Fusaric acid re 46.9 42 0.00091 27.1 4.6 41 3-51 53-93 (650)
24 PRK10586 putative oxidoreducta 46.8 25 0.00054 27.6 3.2 34 17-51 257-290 (362)
25 PRK10510 putative outer membra 45.6 25 0.00055 26.0 3.0 55 6-66 39-94 (219)
26 PF13488 Gly-zipper_Omp: Glyci 45.2 64 0.0014 19.0 5.0 21 32-52 21-41 (46)
27 COG4792 EscU Type III secretor 44.2 1.7E+02 0.0036 24.4 7.7 73 5-78 147-228 (349)
28 KOG1254 ATP-citrate lyase [Ene 44.2 9.4 0.0002 33.5 0.6 16 23-38 583-598 (600)
29 PF04930 FUN14: FUN14 family; 43.7 89 0.0019 20.3 8.0 51 5-68 5-62 (100)
30 PRK10132 hypothetical protein; 42.8 29 0.00062 23.7 2.7 20 30-49 84-104 (108)
31 PRK10452 multidrug efflux syst 41.1 1.2E+02 0.0026 20.9 6.0 39 8-49 36-74 (120)
32 PRK11431 multidrug efflux syst 41.1 1.1E+02 0.0024 20.5 5.5 37 10-49 37-73 (105)
33 PRK10814 outer membrane-specif 40.3 76 0.0016 24.2 4.9 39 3-41 323-371 (399)
34 PRK10404 hypothetical protein; 39.6 28 0.00061 23.4 2.2 17 31-47 79-96 (101)
35 TIGR02212 lolCE lipoprotein re 38.6 92 0.002 23.3 5.0 18 3-20 325-342 (411)
36 PF01864 DUF46: Putative integ 38.2 79 0.0017 23.3 4.6 15 36-50 91-105 (175)
37 PRK11677 hypothetical protein; 37.6 75 0.0016 22.6 4.3 15 1-15 1-15 (134)
38 PF11821 DUF3341: Protein of u 37.5 37 0.0008 24.9 2.7 47 3-49 57-116 (173)
39 COG1422 Predicted membrane pro 37.4 86 0.0019 24.1 4.8 58 5-62 11-83 (201)
40 PF07051 OCIA: Ovarian carcino 36.6 71 0.0015 22.4 3.9 40 8-47 49-90 (111)
41 COG3768 Predicted membrane pro 36.4 2.4E+02 0.0051 23.6 7.4 45 6-50 69-113 (350)
42 PRK05415 hypothetical protein; 36.3 2.4E+02 0.0051 23.0 8.6 23 28-50 93-115 (341)
43 PRK10862 SoxR reducing system 35.8 1.2E+02 0.0025 21.5 5.0 38 2-51 85-122 (154)
44 PF12537 DUF3735: Protein of u 35.5 1.1E+02 0.0024 19.0 6.7 52 3-67 16-68 (72)
45 PF08222 HTH_CodY: CodY helix- 35.2 18 0.00038 23.4 0.7 22 5-26 7-28 (61)
46 PF06553 BNIP3: BNIP3; InterP 34.1 38 0.00083 25.8 2.4 19 32-50 172-190 (197)
47 KOG1272 WD40-repeat-containing 34.0 13 0.00027 32.4 -0.2 28 23-50 368-407 (545)
48 PF06177 QueT: QueT transporte 33.3 30 0.00065 24.7 1.7 29 19-49 31-59 (152)
49 KOG3244 Protein involved in ub 32.4 47 0.001 26.7 2.7 18 49-67 236-253 (267)
50 PRK03655 putative ion channel 32.3 95 0.0021 25.1 4.5 51 3-53 14-77 (414)
51 COG3642 Mn2+-dependent serine/ 32.2 39 0.00084 26.0 2.2 22 58-79 35-56 (204)
52 PF02687 FtsX: FtsX-like perme 31.6 1.2E+02 0.0026 18.1 5.6 47 3-49 56-107 (121)
53 PF12732 YtxH: YtxH-like prote 31.5 61 0.0013 19.8 2.7 14 5-18 4-17 (74)
54 COG4042 Predicted membrane pro 31.2 1.1E+02 0.0024 21.5 4.2 43 6-48 13-68 (104)
55 cd07650 F-BAR_Syp1p_like The F 31.1 1.3E+02 0.0029 22.1 4.8 52 17-70 36-99 (228)
56 PRK11677 hypothetical protein; 30.7 68 0.0015 22.8 3.1 9 60-68 34-42 (134)
57 PF12072 DUF3552: Domain of un 30.4 2.1E+02 0.0046 20.7 7.2 20 1-20 1-20 (201)
58 TIGR00834 ae anion exchange pr 30.4 71 0.0015 29.2 3.8 67 3-78 751-817 (900)
59 PF06645 SPC12: Microsomal sig 30.3 78 0.0017 20.1 3.1 21 3-23 18-38 (76)
60 PF12597 DUF3767: Protein of u 30.2 1.9E+02 0.004 20.0 7.5 42 3-54 45-86 (118)
61 PF11157 DUF2937: Protein of u 30.1 1.3E+02 0.0029 21.6 4.6 33 36-68 8-40 (167)
62 PF06946 Phage_holin_5: Phage 30.0 1.8E+02 0.0039 19.9 5.0 27 20-46 22-48 (93)
63 PF11368 DUF3169: Protein of u 29.9 2.3E+02 0.0049 20.9 6.3 28 4-31 17-44 (248)
64 PF09882 DUF2109: Predicted me 29.7 51 0.0011 22.1 2.2 25 5-29 6-30 (78)
65 PF09988 DUF2227: Uncharacteri 29.0 1.6E+02 0.0034 21.6 4.9 36 29-64 130-165 (169)
66 PHA00671 hypothetical protein 28.9 31 0.00068 24.9 1.2 17 3-19 5-21 (135)
67 PRK10381 LPS O-antigen length 28.6 53 0.0011 26.3 2.5 23 3-25 343-365 (377)
68 PF06696 Strep_SA_rep: Strepto 28.2 95 0.0021 16.7 2.7 15 55-70 9-23 (25)
69 PF10104 Brr6_like_C_C: Di-sul 27.8 2.1E+02 0.0046 19.8 5.2 33 36-71 11-43 (135)
70 PF06295 DUF1043: Protein of u 27.7 62 0.0013 22.2 2.4 16 4-19 4-19 (128)
71 COG0371 GldA Glycerol dehydrog 27.5 1.3E+02 0.0029 24.5 4.6 40 16-55 249-290 (360)
72 COG4591 LolE ABC-type transpor 27.4 2.5E+02 0.0053 23.0 6.1 48 2-50 327-388 (408)
73 cd01334 Lyase_I Lyase class I 27.3 1.2E+02 0.0026 23.0 4.2 25 44-68 135-159 (325)
74 COG4980 GvpP Gas vesicle prote 27.1 69 0.0015 22.5 2.6 17 3-19 8-24 (115)
75 PF11382 DUF3186: Protein of u 27.0 1E+02 0.0022 23.9 3.8 19 4-22 10-28 (308)
76 PF05659 RPW8: Arabidopsis bro 26.2 87 0.0019 22.1 3.0 27 3-29 6-32 (147)
77 PF14276 DUF4363: Domain of un 25.5 2E+02 0.0043 18.7 4.9 32 36-67 8-39 (121)
78 TIGR01185 devC DevC protein. T 25.0 1.7E+02 0.0037 22.9 4.7 36 6-41 320-355 (380)
79 KOG4112 Signal peptidase subun 24.8 1E+02 0.0022 21.7 3.0 20 4-23 34-53 (101)
80 PHA03419 E4 protein; Provision 24.7 1.2E+02 0.0025 23.5 3.6 25 44-68 166-190 (200)
81 PF01730 UreF: UreF; InterPro 24.3 1.2E+02 0.0025 20.4 3.3 25 4-28 107-131 (146)
82 COG1684 FliR Flagellar biosynt 24.3 81 0.0018 24.6 2.8 22 3-24 74-95 (258)
83 PF09490 CbtA: Probable cobalt 23.8 3.3E+02 0.0071 20.7 6.3 46 4-50 77-122 (227)
84 PRK11146 outer membrane-specif 23.8 2.3E+02 0.005 21.6 5.1 17 4-20 327-343 (412)
85 PRK05277 chloride channel prot 23.6 1.8E+02 0.0039 23.1 4.6 24 4-27 3-26 (438)
86 COG4597 BatB ABC-type amino ac 23.5 4.3E+02 0.0093 22.4 6.9 27 3-29 105-142 (397)
87 COG0577 SalY ABC-type antimicr 23.5 2.2E+02 0.0048 19.9 4.5 37 3-39 345-389 (419)
88 COG4575 ElaB Uncharacterized c 23.3 81 0.0017 22.0 2.3 18 30-47 81-99 (104)
89 PRK01610 putative voltage-gate 23.3 2.4E+02 0.0053 22.6 5.4 21 3-23 6-26 (418)
90 PRK10631 p-hydroxybenzoic acid 23.2 1.9E+02 0.0041 25.3 5.0 28 4-39 70-97 (652)
91 TIGR02830 spore_III_AG stage I 23.1 97 0.0021 23.1 2.9 23 48-70 54-76 (186)
92 COG4956 Integral membrane prot 22.9 4.6E+02 0.0099 22.0 7.0 59 4-62 9-75 (356)
93 PHA03418 hypothetical E4 prote 22.8 1.3E+02 0.0028 23.7 3.6 24 45-68 197-220 (230)
94 PRK01844 hypothetical protein; 22.8 1.3E+02 0.0029 19.7 3.2 27 4-30 12-40 (72)
95 PRK09765 PTS system 2-O-a-mann 22.4 1.1E+02 0.0023 26.3 3.3 29 22-50 582-618 (631)
96 COG4997 Uncharacterized conser 22.4 1.2E+02 0.0025 21.1 2.9 30 47-76 32-61 (95)
97 COG4779 FepG ABC-type enteroba 22.2 53 0.0012 27.2 1.5 20 3-22 79-98 (346)
98 PF12102 DUF3578: Domain of un 22.2 80 0.0017 22.9 2.2 17 53-69 167-183 (188)
99 PF10112 Halogen_Hydrol: 5-bro 22.2 2.9E+02 0.0063 19.5 5.9 16 36-51 36-51 (199)
100 PRK15083 PTS system mannitol-s 22.1 1.4E+02 0.0031 25.3 4.0 24 23-46 301-327 (639)
101 PF09679 TraQ: Type-F conjugat 22.1 2.8E+02 0.0061 19.2 6.4 60 8-68 17-78 (93)
102 PF04815 Sec23_helical: Sec23/ 22.0 60 0.0013 20.8 1.4 14 18-31 63-76 (103)
103 PRK09541 emrE multidrug efflux 22.0 2.6E+02 0.0056 18.7 6.5 36 10-48 38-73 (110)
104 PF08702 Fib_alpha: Fibrinogen 21.5 2.8E+02 0.0061 19.6 4.9 23 41-63 19-41 (146)
105 TIGR02741 TraQ type-F conjugat 21.1 2.7E+02 0.006 18.8 5.3 31 9-39 18-48 (80)
106 PF04782 DUF632: Protein of un 21.0 1.6E+02 0.0034 23.5 3.8 20 43-62 84-103 (312)
107 PF11779 DUF3317: Protein of u 20.9 55 0.0012 19.9 1.0 15 27-41 19-33 (58)
108 PF14898 DUF4491: Domain of un 20.8 1.8E+02 0.0039 20.1 3.6 50 1-50 1-52 (94)
109 KOG2496 Cdk activating kinase 20.8 76 0.0017 26.1 2.1 29 49-82 8-39 (325)
110 TIGR01726 HEQRo_perm_3TM amine 20.4 2E+02 0.0043 18.0 3.6 25 16-42 45-69 (99)
111 PF11821 DUF3341: Protein of u 20.2 1.3E+02 0.0029 22.0 3.1 26 5-32 101-126 (173)
112 PF13244 DUF4040: Domain of un 20.1 79 0.0017 19.8 1.6 24 4-29 46-69 (70)
113 COG3302 DmsC DMSO reductase an 20.1 3.4E+02 0.0074 21.8 5.5 44 4-50 86-129 (281)
114 PF11382 DUF3186: Protein of u 20.1 4.2E+02 0.0092 20.5 6.3 14 36-49 15-28 (308)
115 smart00040 CSF2 Granulocyte-ma 20.0 89 0.0019 22.5 2.1 35 28-62 8-42 (121)
No 1
>PLN02806 complex I subunit
Probab=100.00 E-value=9.6e-51 Score=269.78 Aligned_cols=78 Identities=72% Similarity=1.197 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 034827 1 MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGR 78 (82)
Q Consensus 1 M~~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~~an~~ry~~~ 78 (82)
|++|+|+|||++|||||+|||+||||||||||||||++||+||+|+||+++||+||++||||||+++|++||+|||++
T Consensus 1 m~~~~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~~~G~GA~~~n~l~~we~kL~edldk~L~~~r~an~~ry~~~ 78 (81)
T PLN02806 1 MVATATVVGALLGLGTQLYSNALRKLPLMRHPWEHVLAMGLGAVFANQLVKWEVKLKEDLDKMLAKARAANNARYMDE 78 (81)
T ss_pred CcchHHHHHHHHHHHHHHHHhHHhhCccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=98.03 E-value=3.3e-05 Score=54.19 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 6 TMIGALLGLGTQMYSNALRKLPYM-RHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEK 66 (82)
Q Consensus 6 t~~Ga~~Glgtq~ysNaLRKLPlm-R~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~ 66 (82)
.++++.+|++++++.|++.+=|.+ .-==.|++++.+|.++|-++.++++...+..|..++.
T Consensus 28 ~~~~g~~G~~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~~k~~n~~~A~rD~~m~~ 89 (117)
T PF06374_consen 28 SIWLGFLGFCTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYITKYRNYYYAERDADMRH 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 378889999999999999999998 5456799999999999999999999999888887653
No 3
>KOG4516 consensus NADH:ubiquinone oxidoreductase, NDUFC2/B14.5B subunit [Energy production and conversion]
Probab=93.08 E-value=0.53 Score=33.64 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 11 LLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDK 62 (82)
Q Consensus 11 ~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~ 62 (82)
.+|++..++.|--+|=|+..-==.|.+.+++|.++|-++.+-|+.+.+--|.
T Consensus 35 ~~g~~s~~~~N~~~rkP~~~gi~~~ll~i~a~~~AGyy~~~~r~~~ya~RDa 86 (118)
T KOG4516|consen 35 VAGVGSAIFINWGFRKPVFSGIQKHLLFIAAGVGAGYYFDQKRNEYYAKRDA 86 (118)
T ss_pred hhHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988899999999999999999887776654444
No 4
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=83.10 E-value=5 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 35 HLLGMGLGAVFVNQLVKWDAQLQQDLD 61 (82)
Q Consensus 35 hVl~~G~Ga~~~n~l~~wE~kl~~Dl~ 61 (82)
-++++++|+++|...-....+.+.+-+
T Consensus 77 a~~GAa~Ga~~G~~~g~~~~~~~~~~~ 103 (118)
T PF13436_consen 77 AAIGAAAGAAVGAAAGAARGRYQQYNP 103 (118)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 567888888888777655555544333
No 5
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=80.92 E-value=10 Score=26.18 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl 60 (82)
+...+.|....++.|.+.+ ||+||=. -|-+++.+=+|.+++-+...||.+==+++
T Consensus 32 ~~tFv~G~~~~f~~Q~~iq--rrlpYp~-q~~~LVS~v~~sv~sY~vT~~et~~Cq~~ 86 (94)
T PF15110_consen 32 LFTFVLGTGATFFLQKAIQ--RRLPYPF-QWNILVSVVVASVASYQVTRVETQKCQNL 86 (94)
T ss_dssp HHHHHGGGGHHHHHHHHHH--TTSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH--HhCCCCC-CchhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence 3445566667777787766 8999954 48899998889999988888887655544
No 6
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.14 E-value=14 Score=26.35 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHH--HHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLG--MGLGAVFVNQL 49 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~--~G~Ga~~~n~l 49 (82)
++++++|+.+|..+-=|.| ..||--.++ .|.||.+.|-+
T Consensus 53 IsGilVGa~iG~llD~~ag--------TsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAG--------TSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988 489976544 45555555543
No 7
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=69.29 E-value=10 Score=28.69 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh--cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 5 ATMIGALLGLGTQMYSNALR--KLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQD 59 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLR--KLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~D 59 (82)
.++.|-.|+-.++.|++++. .||=+.+-|..|.=.---+++--.+..++....+.
T Consensus 3 ~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~ 59 (297)
T PF02841_consen 3 ITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQR 59 (297)
T ss_dssp EB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999998 59999999999988888888777777777777766
No 8
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=68.77 E-value=7.2 Score=30.38 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 5 ATMIGALLGLGTQMYSNALRKLPY--MRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLE 65 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLRKLPl--mR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~ 65 (82)
+.++|.+.|+...+|...+.++-- ..+||..++...+|..++-.+.+|........++..+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~~~~~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~ 64 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAHPWLLPFLPLAGLLIGYLYQKFGKNSEKGNNLIIE 64 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHH
Confidence 467888888888888776655421 1468988887778877774444443332234444333
No 9
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=67.04 E-value=24 Score=22.50 Aligned_cols=36 Identities=36% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHH
Q 034827 11 LLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQL 49 (82)
Q Consensus 11 ~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l 49 (82)
..+++.-+++.++|++|. .--|-++.|+|.+...-+
T Consensus 38 ~~~~s~~~l~~al~~lp~---~vaYavw~g~g~v~~~~~ 73 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPL---SVAYAVWTGLGIVGVTLV 73 (93)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHHHH
Confidence 567777899999999997 567899999998765544
No 10
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=64.87 E-value=7.5 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHh--------hhhcCCCccchHH
Q 034827 3 WSATMIGALLGLGTQMYSN--------ALRKLPYMRHPWE 34 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysN--------aLRKLPlmR~PWe 34 (82)
.++.+.|++.|++.-+|.. -|+|+|++-+=|+
T Consensus 15 p~~a~wG~aa~~~v~~f~~~vPr~q~dil~KIP~~G~~~~ 54 (64)
T PF09796_consen 15 PNLALWGGAAGAAVLFFTSGVPRFQRDILQKIPVFGSYWI 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhCCccccccc
Confidence 4567889999999988875 5899999977665
No 11
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=60.95 E-value=15 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHH
Q 034827 7 MIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVN 47 (82)
Q Consensus 7 ~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n 47 (82)
++|+++|+.+..|-+ .+.|+.+.==-|.+.+=+-..+..
T Consensus 52 ~ig~~~gl~s~if~~--e~~s~~~~~iiHf~~~~~~~~~~~ 90 (136)
T PF11457_consen 52 LIGAVFGLASLIFEI--ERWSLLKQTIIHFIITYAIFLILA 90 (136)
T ss_pred HHHHHHHHHHHHHcc--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776 666666555455444443333333
No 12
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=59.77 E-value=2.2 Score=28.59 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034827 32 PWEHLLGMGLGAVFVNQ 48 (82)
Q Consensus 32 PWehVl~~G~Ga~~~n~ 48 (82)
|+|-||++|....|-+.
T Consensus 19 PfEDvLgvGh~~G~sSi 35 (80)
T PF08149_consen 19 PFEDVLGVGHSKGFSSI 35 (80)
T ss_pred chHHeeEeeccCceeEE
Confidence 99999999976555443
No 13
>COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=58.94 E-value=8.6 Score=26.24 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMR 30 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR 30 (82)
+|=..+|+ |+.|..|.+++||.|-++
T Consensus 60 lTEA~vGa--~l~t~v~~~alrk~~r~~ 85 (87)
T COG1563 60 LTEALVGA--GLSTAVYAIALRKTLRME 85 (87)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHhHhhh
Confidence 34455665 578999999999998765
No 14
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=56.56 E-value=66 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=24.6
Q ss_pred hHHHHHHH-HHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGA-LLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVN 47 (82)
Q Consensus 3 ~t~t~~Ga-~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n 47 (82)
+++.++++ ++|+.-- +.|.. ++++||-|+=..-+....+-
T Consensus 55 ~~Pamil~~~~Gl~L~-~~~~~----~~~~~Wl~~KL~~V~lL~~~ 95 (142)
T TIGR00701 55 MNPAMISTFIFGIINA-HIEPF----VAKSGWLHFKLFAVLLLLIY 95 (142)
T ss_pred hHHHHHHHHHHHHHHH-HHhHH----hhCCCHHHHHHHHHHHHHHH
Confidence 34555544 5666553 23322 57789999977777766654
No 15
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=54.48 E-value=53 Score=22.28 Aligned_cols=39 Identities=15% Similarity=-0.026 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHH
Q 034827 8 IGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQL 49 (82)
Q Consensus 8 ~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l 49 (82)
+-...+++.-+.|.++|++|.= =.|.+|.|+|.+...-.
T Consensus 41 ~~~~~~~sf~~Ls~al~~lpvg---vAYAvW~GiG~v~~~~i 79 (109)
T PRK10650 41 SLAAVLAAFSALSQAVKGIDLS---VAYALWGGFGIAATLAA 79 (109)
T ss_pred HHHHHHHHHHHHHHHHhhCchH---HHHHHHHHHHHHHHHHH
Confidence 3445666777889999999973 46889999998766443
No 16
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=54.23 E-value=31 Score=23.17 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHH-HHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEH-LLGMGLGAVFVNQL 49 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWeh-Vl~~G~Ga~~~n~l 49 (82)
++...+|.++|+.--. |..= ++++++|++.+...
T Consensus 2 ~~G~~~G~LiGll~~~-------------pl~G~~~GA~~Gal~G~l~ 36 (102)
T PF06897_consen 2 LSGALWGLLIGLLFGP-------------PLLGAAVGAAAGALAGALS 36 (102)
T ss_pred cchhHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHhHHh
Confidence 3556677777765321 1111 67888888887744
No 17
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=53.45 E-value=56 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 37 LGMGLGAVFVNQLVKWDAQLQQDLD 61 (82)
Q Consensus 37 l~~G~Ga~~~n~l~~wE~kl~~Dl~ 61 (82)
++..+|+.+++++.+-|.++++++.
T Consensus 69 ~G~~~G~~~g~~~d~q~~~l~~~l~ 93 (219)
T PRK10510 69 AGAALGGGVGYYMDVQEAKLRDKMR 93 (219)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3445666788888766666666554
No 18
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=52.19 E-value=31 Score=28.86 Aligned_cols=44 Identities=14% Similarity=-0.024 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh-cCCCccchHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALR-KLPYMRHPWEHLLGMGLGAVFV 46 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLR-KLPlmR~PWehVl~~G~Ga~~~ 46 (82)
+.+.++|.++|++...-.+.+- -+|..=.||-=+++.+++.++|
T Consensus 581 ~~GGiiGi~lg~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~vG 625 (648)
T PRK10535 581 LVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLSAFLCSTVTG 625 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCHHHHHHHHHHHHHHH
Confidence 4456677777766655555442 3566667777777766655443
No 19
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=52.00 E-value=17 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.698 Sum_probs=13.8
Q ss_pred cchHHHH-HHHHHHHHHHHHH
Q 034827 30 RHPWEHL-LGMGLGAVFVNQL 49 (82)
Q Consensus 30 R~PWehV-l~~G~Ga~~~n~l 49 (82)
.|||.-| +..|+|.++|-.+
T Consensus 71 e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 71 ENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HChHHHHHHHHHHHHHHHHHH
Confidence 6899876 4567777776554
No 20
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=51.70 E-value=33 Score=28.56 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=24.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 29 MRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDK 62 (82)
Q Consensus 29 mR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~ 62 (82)
+.+||-++++.=+|+++.--+. .-+++..+|
T Consensus 438 ~~~~~~~~~~~~vG~~v~a~~~---~~~k~~~~~ 468 (482)
T PRK11404 438 MSPVGSFYLVLAIGLALNISFI---IVLKGLWLR 468 (482)
T ss_pred hccHHHHHHHHHHHHHHHHHHH---HHHhhHhhh
Confidence 8999999999999999887777 445555554
No 21
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=50.41 E-value=35 Score=20.54 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 35 HLLGMGLGAVFVNQLVKWDAQLQQDLDKM 63 (82)
Q Consensus 35 hVl~~G~Ga~~~n~l~~wE~kl~~Dl~~m 63 (82)
-+|+.|+|+++-++..+-+---.+...+|
T Consensus 7 Slla~GaG~aAy~~A~~n~m~n~R~MKKm 35 (43)
T PF13056_consen 7 SLLAFGAGAAAYQMAQRNDMMNKRQMKKM 35 (43)
T ss_pred HHHHHhHHHHHHHHHHHccccchHHHHHH
Confidence 36889999998887765554455555554
No 22
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=48.87 E-value=59 Score=22.93 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHH---------HH----HHHHHHHHHHHHHHHHHH
Q 034827 35 HLLGMGLGAVFVNQ---------LV----KWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 35 hVl~~G~Ga~~~n~---------l~----~wE~kl~~Dl~~mL~~~~ 68 (82)
-+|.+|+||+.-.+ |+ .+|.+.++.+++.+++.+
T Consensus 21 qIWLAGLGA~ak~~~EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~ 67 (132)
T PF05597_consen 21 QIWLAGLGAYAKAQEEGSKVFEALVKEGEKLEKKTRKKAEEQVEEAR 67 (132)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999996433 33 577888888888777766
No 23
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=46.86 E-value=42 Score=27.09 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVK 51 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~ 51 (82)
+.+|++|++.|+..-.. +-.+||..++++++-..+..++..
T Consensus 53 ~~GT~iGa~~~~~lv~~--------~~~~p~l~~~~lal~i~~c~~~~~ 93 (650)
T PF04632_consen 53 LIGTLIGAAAGLLLVAL--------FPQSPLLFLLALALWIGLCLYLSL 93 (650)
T ss_pred HHHHHHHHHHHHHHHHH--------hccCHHHHHHHHHHHHHHHHHHHH
Confidence 45788999988876421 235899998887776665555553
No 24
>PRK10586 putative oxidoreductase; Provisional
Probab=46.82 E-value=25 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.3
Q ss_pred HHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHH
Q 034827 17 QMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVK 51 (82)
Q Consensus 17 q~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~ 51 (82)
=..+|+|-.+|-. +++.|=-..+.|-.+..++..
T Consensus 257 Hai~~~lt~~~~~-~~~lHGeaVa~G~l~~l~l~~ 290 (362)
T PRK10586 257 HAVHNGLTVLPQT-EKFLHGTKVAYGILVQSALLG 290 (362)
T ss_pred HHHHHccccccCC-CcCCCHHHHHHHHHHHHHHcC
Confidence 3478999999955 789999999999998877754
No 25
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=45.60 E-value=25 Score=26.00 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 6 TMIGALLGLGTQMYSNALRKLPYMRHP-WEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEK 66 (82)
Q Consensus 6 t~~Ga~~Glgtq~ysNaLRKLPlmR~P-WehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~ 66 (82)
+++||+.|-.....+..- .+. .--+++.++|+++|.-.=.+=++-++++++.|+.
T Consensus 39 a~~Ga~~Ga~~G~~~g~~------~~~~~~a~~ga~~G~~~G~~~g~~~d~q~~~l~~~l~~ 94 (219)
T PRK10510 39 AGIGSLVGAGIGALSSSK------KDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRG 94 (219)
T ss_pred hHHHHHHHHHHHhhhcCC------CcccchhhhHhHHHhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 455665555544444311 011 2456788889999988876666666666665543
No 26
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=45.19 E-value=64 Score=18.99 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 034827 32 PWEHLLGMGLGAVFVNQLVKW 52 (82)
Q Consensus 32 PWehVl~~G~Ga~~~n~l~~w 52 (82)
.+--+++.++|++++...-+.
T Consensus 21 ~~ga~iGa~vGa~~G~~ig~~ 41 (46)
T PF13488_consen 21 GKGAAIGAAVGAAVGAAIGNY 41 (46)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 467788888888888776543
No 27
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=44.19 E-value=1.7e+02 Score=24.44 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCccc--------hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 034827 5 ATMIGALLGLGTQMYSNALRKLPYMRH--------PWEHLLGMG-LGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRY 75 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLRKLPlmR~--------PWehVl~~G-~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~~an~~ry 75 (82)
..+.+.++++..+.|.|.++-||+--- --.-.+|.| ++++.+.-+.++--+..+=+.+ |+=.|.+-+|+|
T Consensus 147 V~vLslif~f~l~~~~~t~~~lp~CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~-lkMSKdEVkRE~ 225 (349)
T COG4792 147 VVVLSLIFWFMLHGYANTFLYLPGCGLYCALPVVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKE-LKMSKDEVKREY 225 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHH
Confidence 457899999999999999999998621 223345555 5666666677766666666655 444444455555
Q ss_pred hhh
Q 034827 76 FGR 78 (82)
Q Consensus 76 ~~~ 78 (82)
=|-
T Consensus 226 Kd~ 228 (349)
T COG4792 226 KDM 228 (349)
T ss_pred hcc
Confidence 443
No 28
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=44.18 E-value=9.4 Score=33.46 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.2
Q ss_pred hhcCCCccchHHHHHH
Q 034827 23 LRKLPYMRHPWEHLLG 38 (82)
Q Consensus 23 LRKLPlmR~PWehVl~ 38 (82)
=-|-||.||||+.++.
T Consensus 583 rlkq~lyrhpwdd~~y 598 (600)
T KOG1254|consen 583 RLKQGLYRHPWDDISY 598 (600)
T ss_pred hhhCccccCCchhhhh
Confidence 3478999999998865
No 29
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=43.72 E-value=89 Score=20.26 Aligned_cols=51 Identities=25% Similarity=0.477 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 034827 5 ATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLV-------KWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~-------~wE~kl~~Dl~~mL~~~~ 68 (82)
++++|.+.|+.++=.+..+ ++..|.+-++.-++. +|+ |+++|+++..++.+
T Consensus 5 G~~~G~~~G~~~kK~~k~~------------a~~~G~~~l~lq~l~~~G~i~Vnw~-kl~~~~~~~~~~~~ 62 (100)
T PF04930_consen 5 GSVSGLCAGYAIKKVSKLA------------AFLVGGGFLLLQYLASKGYIKVNWD-KLEKDVKKALDQNK 62 (100)
T ss_pred hHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCCeEEECHH-HHHHHHHHHHHhhc
Confidence 4556666666666555543 455666666555554 465 58999988665544
No 30
>PRK10132 hypothetical protein; Provisional
Probab=42.84 E-value=29 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=13.0
Q ss_pred cchHHHH-HHHHHHHHHHHHH
Q 034827 30 RHPWEHL-LGMGLGAVFVNQL 49 (82)
Q Consensus 30 R~PWehV-l~~G~Ga~~~n~l 49 (82)
.|||.-| +++|+|.++|-.+
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHH
Confidence 4899876 4556666666543
No 31
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=41.12 E-value=1.2e+02 Score=20.90 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHH
Q 034827 8 IGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQL 49 (82)
Q Consensus 8 ~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l 49 (82)
.-++.+++.-+.|-++|++|+=- .|.+|.|+|.+...-+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsi---AYavw~GiG~v~~~~i 74 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGV---AYALWEGIGILFITLF 74 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchh---HHHHHHHHHHHHHHHH
Confidence 34556677778899999999854 6888999988766443
No 32
>PRK11431 multidrug efflux system protein; Provisional
Probab=41.10 E-value=1.1e+02 Score=20.50 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHH
Q 034827 10 ALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQL 49 (82)
Q Consensus 10 a~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l 49 (82)
...+++.-+.|-++|++|. -=.|.+|.|+|.+...-.
T Consensus 37 ~~~~~sf~~Ls~al~~ip~---gvaYAvW~GiG~v~~~li 73 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPV---GTAYAVWTGIGAVGAAIT 73 (105)
T ss_pred HHHHHHHHHHHHHHhhCCc---HhHHHHHHHHHHHHHHHH
Confidence 3456666777999999997 457999999998766443
No 33
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=40.29 E-value=76 Score=24.16 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhh----------hcCCCccchHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNAL----------RKLPYMRHPWEHLLGMGL 41 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaL----------RKLPlmR~PWehVl~~G~ 41 (82)
+.++++|.++|+....+.+.+ -.+|.--+||..++...+
T Consensus 323 ~~G~~~G~~lg~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 371 (399)
T PRK10814 323 IIGALLGALLGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALV 371 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccceeeecHHHHHHHHHH
Confidence 345566777776554433321 135544455555544433
No 34
>PRK10404 hypothetical protein; Provisional
Probab=39.64 E-value=28 Score=23.42 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=9.1
Q ss_pred chHHHH-HHHHHHHHHHH
Q 034827 31 HPWEHL-LGMGLGAVFVN 47 (82)
Q Consensus 31 ~PWehV-l~~G~Ga~~~n 47 (82)
|||.-| +++|+|.++|-
T Consensus 79 ~Pw~avGiaagvGlllG~ 96 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGL 96 (101)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999854 33344444443
No 35
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=38.62 E-value=92 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYS 20 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ys 20 (82)
+.+.++|.++|+......
T Consensus 325 l~g~~~G~~lg~~~~~~~ 342 (411)
T TIGR02212 325 VIGTLLGVILGVLLALNL 342 (411)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666554433
No 36
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=38.20 E-value=79 Score=23.30 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 034827 36 LLGMGLGAVFVNQLV 50 (82)
Q Consensus 36 Vl~~G~Ga~~~n~l~ 50 (82)
.+..|.||.+|...-
T Consensus 91 g~ll~~gamlGDl~~ 105 (175)
T PF01864_consen 91 GFLLGLGAMLGDLPG 105 (175)
T ss_pred HHHHHHHHHHhHHHH
Confidence 346788888886665
No 37
>PRK11677 hypothetical protein; Provisional
Probab=37.61 E-value=75 Score=22.58 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=6.6
Q ss_pred CchHHHHHHHHHHHH
Q 034827 1 MAWSATMIGALLGLG 15 (82)
Q Consensus 1 M~~t~t~~Ga~~Glg 15 (82)
|.+..+++|.+.|+.
T Consensus 1 M~W~~a~i~livG~i 15 (134)
T PRK11677 1 MTWEYALIGLVVGII 15 (134)
T ss_pred CcHHHHHHHHHHHHH
Confidence 444444444444443
No 38
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=37.46 E-value=37 Score=24.92 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh------cCCCccchH-------HHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALR------KLPYMRHPW-------EHLLGMGLGAVFVNQL 49 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLR------KLPlmR~PW-------ehVl~~G~Ga~~~n~l 49 (82)
+...++|++.|+..|.|+|+.. -=|+..=|- .-||+..+|++++...
T Consensus 57 l~~Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~S~Pafipi~FEltVL~aa~~~~~g~l~ 116 (173)
T PF11821_consen 57 LVGGLTGFATAFLLQWYTNAVDYPLNIGGKPLFSWPAFIPITFELTVLFAALGTVLGMLI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceecCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999984 114442221 3467777777776654
No 39
>COG1422 Predicted membrane protein [Function unknown]
Probab=37.41 E-value=86 Score=24.09 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh----c--CCCc--cchHHHHHHHHH--HHHHH---HHHHHHHH--HHHHHHHH
Q 034827 5 ATMIGALLGLGTQMYSNALR----K--LPYM--RHPWEHLLGMGL--GAVFV---NQLVKWDA--QLQQDLDK 62 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLR----K--LPlm--R~PWehVl~~G~--Ga~~~---n~l~~wE~--kl~~Dl~~ 62 (82)
...+|..+|+.+..--+++- . .|.+ ++|-.-++.+|+ |.++. -.+.+||+ ++++..+|
T Consensus 11 v~~~g~~~g~~~~~~~~~i~~~ln~~f~P~i~~~~p~lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~e 83 (201)
T COG1422 11 VGGLGLFFGIMFSSIRDGIGGALNVVFGPLLSPLPPHLVILVAAVITGLYITILQKLLIDQEKMKELQKMMKE 83 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566666665543333322 1 2433 788777777664 33321 23467773 45555444
No 40
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=36.57 E-value=71 Score=22.43 Aligned_cols=40 Identities=18% Similarity=-0.046 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHh-hhhcCCCccchHHHHHHHHH-HHHHHH
Q 034827 8 IGALLGLGTQMYSN-ALRKLPYMRHPWEHLLGMGL-GAVFVN 47 (82)
Q Consensus 8 ~Ga~~Glgtq~ysN-aLRKLPlmR~PWehVl~~G~-Ga~~~n 47 (82)
+++++++.|+.-++ +.-|=--.--++-.|...|+ |.++|-
T Consensus 49 ls~~s~~~t~~lv~~G~l~~~~rfG~~PKv~~ag~~Gy~~GK 90 (111)
T PF07051_consen 49 LSAGSMLVTQGLVKKGYLKSSPRFGSLPKVAFAGILGYFVGK 90 (111)
T ss_pred HHHHHHHHHHHHHHcCcccCCCccccccHHHHHHHHHHhhhH
Confidence 67788888887433 32221112223788999998 777764
No 41
>COG3768 Predicted membrane protein [Function unknown]
Probab=36.41 E-value=2.4e+02 Score=23.59 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHH
Q 034827 6 TMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 6 t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~ 50 (82)
+.+|.++|+.+-+.|--+--=-+=|+-|.+..+.++|++++-..+
T Consensus 69 ~a~~vLf~~Av~~q~~qwi~d~~qr~dWl~~~a~~v~~l~vlagv 113 (350)
T COG3768 69 GAGGVLFSLAVGLQSVQWIRDLFQRADWLGLGAAAVGALIVLAGV 113 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555555554444333222345789999888887776655444
No 42
>PRK05415 hypothetical protein; Provisional
Probab=36.31 E-value=2.4e+02 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=17.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHH
Q 034827 28 YMRHPWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 28 lmR~PWehVl~~G~Ga~~~n~l~ 50 (82)
+-|+||....+.+++++++-...
T Consensus 93 ~~~~~wlg~~~~~~~~~~~~~~~ 115 (341)
T PRK05415 93 FQRSDWLGLGAAVVGALIVLAGL 115 (341)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHH
Confidence 45889999988888777766544
No 43
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=35.83 E-value=1.2e+02 Score=21.48 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHH
Q 034827 2 AWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVK 51 (82)
Q Consensus 2 ~~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~ 51 (82)
|+-..++|+++| .+++. -++|. +++.-+|.+++..+.+
T Consensus 85 PLl~li~ga~l~--~~~~~---------~e~~~-~~~~~~g~~~g~~~~r 122 (154)
T PRK10862 85 PLVGLFLGAALF--QLLFG---------SDLAA-LCGALLGGVGGFLLAR 122 (154)
T ss_pred HHHHHHHHHHHH--HHHhc---------chHHH-HHHHHHHHHHHHHHHH
Confidence 455566676665 33332 27775 4555555566655553
No 44
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=35.47 E-value=1.1e+02 Score=18.98 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVF-VNQLVKWDAQLQQDLDKMLEKA 67 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~-~n~l~~wE~kl~~Dl~~mL~~~ 67 (82)
++.|+++.++|+|+- .-||.++-..=- -+- -..+..-|.++..-.+...+|.
T Consensus 16 iGVt~mAiLSG~gaV------------stpy~~~~~~~~-~v~~~~~i~~~~~~l~~t~~~l~~Kk 68 (72)
T PF12537_consen 16 IGVTLMAILSGFGAV------------STPYYYFSYFRR-PVSRESDINNAERRLWHTRDMLVEKK 68 (72)
T ss_pred HHHHHHHHHhhhhHH------------ccHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999974 346666542000 000 3445555566666655543333
No 45
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=35.15 E-value=18 Score=23.40 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 034827 5 ATMIGALLGLGTQMYSNALRKL 26 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLRKL 26 (82)
+.-|-==.|+.-..-+||||||
T Consensus 7 as~iAd~~GiTRSvIVNALRKl 28 (61)
T PF08222_consen 7 ASKIADRVGITRSVIVNALRKL 28 (61)
T ss_dssp HHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHhCccHHHHHHHHHHH
Confidence 3334445677888889999997
No 46
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.
Probab=34.12 E-value=38 Score=25.81 Aligned_cols=19 Identities=42% Similarity=0.702 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 034827 32 PWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 32 PWehVl~~G~Ga~~~n~l~ 50 (82)
=-.|+|+.|+|.++|-.+.
T Consensus 172 llS~lL~~GlGiyIgkRl~ 190 (197)
T PF06553_consen 172 LLSHLLGLGLGIYIGKRLA 190 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccEEEEecccc
Confidence 3479999999999997764
No 47
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=33.99 E-value=13 Score=32.39 Aligned_cols=28 Identities=39% Similarity=0.755 Sum_probs=22.2
Q ss_pred hhcCCCccc------------hHHHHHHHHHHHHHHHHHH
Q 034827 23 LRKLPYMRH------------PWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 23 LRKLPlmR~------------PWehVl~~G~Ga~~~n~l~ 50 (82)
=++.|||+| |||-||++|--..|-|.|+
T Consensus 368 ~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilV 407 (545)
T KOG1272|consen 368 HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILV 407 (545)
T ss_pred CCCcchhhhccCcccccceeccHHHeeeccccCCceeEec
Confidence 458899987 9999999997766666554
No 48
>PF06177 QueT: QueT transporter; InterPro: IPR010387 This entry is represented by Bacteriophage Dp-1, QueT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes [, ], suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.
Probab=33.34 E-value=30 Score=24.74 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=24.7
Q ss_pred HHhhhhcCCCccchHHHHHHHHHHHHHHHHH
Q 034827 19 YSNALRKLPYMRHPWEHLLGMGLGAVFVNQL 49 (82)
Q Consensus 19 ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l 49 (82)
.|++|-=||++ +| +++++..+|+++.|..
T Consensus 31 isE~L~~L~~f-~~-~~i~Gl~lG~~iaNl~ 59 (152)
T PF06177_consen 31 ISEALNLLPFF-NP-KYIPGLTLGCFIANLF 59 (152)
T ss_pred HHHHHHHHHHh-CH-HHHHHHHHHHHHHHhc
Confidence 47888888874 66 9999999999999976
No 49
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=32.39 E-value=47 Score=26.70 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034827 49 LVKWDAQLQQDLDKMLEKA 67 (82)
Q Consensus 49 l~~wE~kl~~Dl~~mL~~~ 67 (82)
.+.||..+++|+++ ++++
T Consensus 236 ~vYwE~~~e~dl~~-vR~e 253 (267)
T KOG3244|consen 236 NVYWERHFEKDLEE-VRKE 253 (267)
T ss_pred hhHHHHHHHHHHHH-HHHH
Confidence 57899999999999 5554
No 50
>PRK03655 putative ion channel protein; Provisional
Probab=32.26 E-value=95 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCc------------c-chHHHHHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYM------------R-HPWEHLLGMGLGAVFVNQLVKWD 53 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlm------------R-~PWehVl~~G~Ga~~~n~l~~wE 53 (82)
+.+.++|.+.|+.+-+|.+.+.++-.+ + +||-.++.--+|..+...+.++.
T Consensus 14 ~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~ 77 (414)
T PRK03655 14 LPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFS 77 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHc
Confidence 568899999999999999888764311 2 23434444456667777776654
No 51
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.18 E-value=39 Score=26.03 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc
Q 034827 58 QDLDKMLEKAKAANERRYFGRC 79 (82)
Q Consensus 58 ~Dl~~mL~~~~~an~~ry~~~~ 79 (82)
.+||+.|++.|..+++|.+.+|
T Consensus 35 p~LD~klrr~Rt~~Earil~~a 56 (204)
T COG3642 35 PELDEKLRRERTRREARILAKA 56 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999654
No 52
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=31.56 E-value=1.2e+02 Score=18.10 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-h----cCCCccchHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNAL-R----KLPYMRHPWEHLLGMGLGAVFVNQL 49 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaL-R----KLPlmR~PWehVl~~G~Ga~~~n~l 49 (82)
+.+.++|.++|...+-+.+.. . -.+-+.-||..++...+...+...+
T Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (121)
T PF02687_consen 56 LIGILIGILLGILLIIFLINFLSKFFGDSFPFTISPWSFLIVFIIILLISII 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeCHHHHHHHHHHHHHHHHH
Confidence 456677777777666554433 2 3334455666666555544444333
No 53
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.53 E-value=61 Score=19.80 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 034827 5 ATMIGALLGLGTQM 18 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ 18 (82)
+.++|++.|..+.+
T Consensus 4 g~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 4 GFLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 54
>COG4042 Predicted membrane protein [Function unknown]
Probab=31.20 E-value=1.1e+02 Score=21.46 Aligned_cols=43 Identities=33% Similarity=0.641 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCC------ccchHHH-------HHHHHHHHHHHHH
Q 034827 6 TMIGALLGLGTQMYSNALRKLPY------MRHPWEH-------LLGMGLGAVFVNQ 48 (82)
Q Consensus 6 t~~Ga~~Glgtq~ysNaLRKLPl------mR~PWeh-------Vl~~G~Ga~~~n~ 48 (82)
.++|-+..+.+..-.-..-+||. .|+.||- |+..|+-+.+.|.
T Consensus 13 ~i~gylaA~i~svivalvLgLP~i~~ekP~R~Swe~SaiFPTPviAlG~tai~i~~ 68 (104)
T COG4042 13 IIIGYLAALITSVIVALVLGLPIIPKEKPIRFSWETSAIFPTPVIALGITAIFINL 68 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccccccccccccccCccHHHhchHHHhHHh
Confidence 34566666666666677889994 5999994 7778877777663
No 55
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.14 E-value=1.3e+02 Score=22.13 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=32.4
Q ss_pred HHHHhhhhcCCC------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034827 17 QMYSNALRKLPY------------MRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAA 70 (82)
Q Consensus 17 q~ysNaLRKLPl------------mR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~~a 70 (82)
.-|+..||||.= |+.||.-+.. ---..++.-...-.+++.|+++-++.=+..
T Consensus 36 ~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~--e~e~~a~~H~~la~~l~~~ve~~l~~~~~~ 99 (228)
T cd07650 36 RQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIES--ETEFIAASHGELAQRIETDVEEPLRDFATS 99 (228)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358888888762 3567766533 233445566666678888887666555433
No 56
>PRK11677 hypothetical protein; Provisional
Probab=30.75 E-value=68 Score=22.79 Aligned_cols=9 Identities=56% Similarity=0.538 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 034827 60 LDKMLEKAK 68 (82)
Q Consensus 60 l~~mL~~~~ 68 (82)
+++-|++.+
T Consensus 34 le~eLe~~k 42 (134)
T PRK11677 34 LQYELEKNK 42 (134)
T ss_pred HHHHHHHHH
Confidence 333333333
No 57
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=30.45 E-value=2.1e+02 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 034827 1 MAWSATMIGALLGLGTQMYS 20 (82)
Q Consensus 1 M~~t~t~~Ga~~Glgtq~ys 20 (82)
|.+...++|+++|+++.++.
T Consensus 1 ~~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544443
No 58
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=30.39 E-value=71 Score=29.21 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGR 78 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~~an~~ry~~~ 78 (82)
+|..+++.++|+++-+.. .|+.+| |.-=|--++.||+...-|||+. +++ -=++-..|.-+...|+++
T Consensus 751 vT~ll~~lLiglsv~~~P-vL~~IP-~aVL~GvFlYMGv~SL~GnQ~~---~Ri----~llf~p~k~~P~~~ylr~ 817 (900)
T TIGR00834 751 VTGLLVAVLVGLSILMEP-ILKRIP-LAVLFGIFLYMGVTSLSGIQLF---DRL----LLLLMPPKYHPDVPYVRR 817 (900)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhhcc-HHHHHHHHHHHHHhhcccCHHH---HHH----HHHhcCcccCCCchhhhc
Confidence 477888889998776655 677776 3445677889999999999987 333 223444454555566544
No 59
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.30 E-value=78 Score=20.15 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 034827 3 WSATMIGALLGLGTQMYSNAL 23 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaL 23 (82)
...+++|.+.|..+|-+++.+
T Consensus 18 ~~~~iisfi~Gy~~q~~~~~~ 38 (76)
T PF06645_consen 18 IISAIISFIVGYITQSFSYTF 38 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888775
No 60
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=30.23 E-value=1.9e+02 Score=19.95 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDA 54 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~ 54 (82)
++++..|+++|+.+-++. + .||.- .=.|+|.+++.-+..||.
T Consensus 45 L~Gi~~G~~vG~~~fl~~----~-----~~~~A-~nwavgsF~l~s~~~we~ 86 (118)
T PF12597_consen 45 LYGIAGGFGVGGLRFLFT----S-----NPRKA-ANWAVGSFFLGSLGSWEY 86 (118)
T ss_pred HHHHHHHHHHHhhhhccc----C-----CCccc-hhhhhHHHHHHHHHHHHH
Confidence 344455555555544433 3 22222 335899999999999995
No 61
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=30.06 E-value=1.3e+02 Score=21.62 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 36 LLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 36 Vl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~ 68 (82)
.++..+|++++.|++++=.++.+.|+.-+.+.+
T Consensus 8 l~~~~~g~l~~~Q~P~F~~qY~QrL~g~~~e~~ 40 (167)
T PF11157_consen 8 LAVFAAGALIGSQIPEFAQQYQQRLGGHLDELR 40 (167)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999888777665
No 62
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=30.04 E-value=1.8e+02 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=13.9
Q ss_pred HhhhhcCCCccchHHHHHHHHHHHHHH
Q 034827 20 SNALRKLPYMRHPWEHLLGMGLGAVFV 46 (82)
Q Consensus 20 sNaLRKLPlmR~PWehVl~~G~Ga~~~ 46 (82)
.-+++|-+...+-|.-++.+++|.+.|
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG 48 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLG 48 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHH
Confidence 444555555555555555555555443
No 63
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.93 E-value=2.3e+02 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCccc
Q 034827 4 SATMIGALLGLGTQMYSNALRKLPYMRH 31 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLPlmR~ 31 (82)
.+.++|++.|.....+.|.+.+.+.--.
T Consensus 17 lg~~iGg~~G~~~~~~~~~~~~~~~~~~ 44 (248)
T PF11368_consen 17 LGGLIGGFIGFFIGRIGNLLDNISFSTF 44 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 4567888888888877777777766544
No 64
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=29.69 E-value=51 Score=22.11 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCc
Q 034827 5 ATMIGALLGLGTQMYSNALRKLPYM 29 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLRKLPlm 29 (82)
-.+++..+++=+-+--|..|||||+
T Consensus 6 ~g~Iai~~~iR~~~~~~r~~KL~yL 30 (78)
T PF09882_consen 6 IGIIAILMAIRIFLTKSRARKLLYL 30 (78)
T ss_pred HHHHHHHHHHHHHHhHhHHHhhhHH
Confidence 3456677788888888999999986
No 65
>PF09988 DUF2227: Uncharacterized metal-binding protein (DUF2227); InterPro: IPR019250 This entry represents hypothetical bacterial proteins that possess metal binding properties; however, their exact function has not yet been determined.
Probab=29.04 E-value=1.6e+02 Score=21.60 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 29 MRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKML 64 (82)
Q Consensus 29 mR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL 64 (82)
++.+++.++..-+|...+.+++-.-+-+..+.+++.
T Consensus 130 ~~~~~~~~~a~~~Gl~l~~~~H~i~D~~~s~~k~~~ 165 (169)
T PF09988_consen 130 LRQYPEELLAFLIGLELGAWLHLISDWIPSDYKRRQ 165 (169)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHhcCccchhhhh
Confidence 466789999999999999999977777777777744
No 66
>PHA00671 hypothetical protein
Probab=28.86 E-value=31 Score=24.89 Aligned_cols=17 Identities=41% Similarity=0.808 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMY 19 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~y 19 (82)
.|+.++|+..|+|..||
T Consensus 5 vtavavgaavgvgasmy 21 (135)
T PHA00671 5 VTAVAVGAAVGVGASMY 21 (135)
T ss_pred hhhhhhhhhhcccHHHH
Confidence 67889999999999998
No 67
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=28.60 E-value=53 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhc
Q 034827 3 WSATMIGALLGLGTQMYSNALRK 25 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRK 25 (82)
+-++++|.++|.+..+.-+++|+
T Consensus 343 vl~~llG~~lg~~~vL~r~~~r~ 365 (377)
T PRK10381 343 ILAALIGGMLACGFVLLRHAMRS 365 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999988888888775
No 68
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=28.18 E-value=95 Score=16.65 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 034827 55 QLQQDLDKMLEKAKAA 70 (82)
Q Consensus 55 kl~~Dl~~mL~~~~~a 70 (82)
+++.||++ .+++++.
T Consensus 9 ~YqaeLa~-vqk~na~ 23 (25)
T PF06696_consen 9 QYQAELAR-VQKANAD 23 (25)
T ss_dssp HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-HHHHhhc
Confidence 45677777 5555543
No 69
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=27.79 E-value=2.1e+02 Score=19.79 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034827 36 LLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAAN 71 (82)
Q Consensus 36 Vl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~~an 71 (82)
++.+++..+++-... ..+++|++.+++..+..-
T Consensus 11 ~~~~~~~ly~~~~~~---~tI~~DI~~k~~~~~~~~ 43 (135)
T PF10104_consen 11 IILVSIFLYLVYSFI---STIRSDINHKIEQYKLEL 43 (135)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455677777777777 788999998888777544
No 70
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.65 E-value=62 Score=22.15 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034827 4 SATMIGALLGLGTQMY 19 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~y 19 (82)
.+.+||.++|+...-+
T Consensus 4 i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555544333
No 71
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=27.45 E-value=1.3e+02 Score=24.52 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=33.5
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHH--HHHHH
Q 034827 16 TQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLV--KWDAQ 55 (82)
Q Consensus 16 tq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~--~wE~k 55 (82)
--++||+|-.+|.=-|+-.|=-=.|.|.+.-.+|. .||+.
T Consensus 249 eH~~hh~Lt~l~~~~h~~lHGekVa~Gtlv~~~L~~~~~~~~ 290 (360)
T COG0371 249 EHAFHHGLTMLPPETHHALHGEKVAYGTLVQLYLHGKNWEEI 290 (360)
T ss_pred HHHHHHHHHhcccCCccccchhHHHHHHHHHHHHhcCchhhh
Confidence 34799999999977799999999999999999994 45443
No 72
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=27.45 E-value=2.5e+02 Score=23.02 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhh--------------cCCCccchHHHHHHHHHHHHHHHHHH
Q 034827 2 AWSATMIGALLGLGTQMYSNALR--------------KLPYMRHPWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 2 ~~t~t~~Ga~~Glgtq~ysNaLR--------------KLPlmR~PWehVl~~G~Ga~~~n~l~ 50 (82)
++.++++|.++|+....+.|.++ .||.--+|++.++ .-+++.+.+.++
T Consensus 327 G~iG~llG~iLG~~~~~~i~~~~~~~~~~~~~~~~~~~lP~~~~~~di~~-v~~~al~ls~lA 388 (408)
T COG4591 327 GLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGISTLPIELSLLDVVL-VLVFALLLSLLA 388 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccceeccccCCceeeHHHHHH-HHHHHHHHHHHH
Confidence 35678899999999988887654 4555566665554 444555555444
No 73
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=27.35 E-value=1.2e+02 Score=23.05 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 44 VFVNQLVKWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 44 ~~~n~l~~wE~kl~~Dl~~mL~~~~ 68 (82)
-||.++..|.+.+.+|++++.+-.+
T Consensus 135 T~G~~~~~~~~~l~r~~~rL~~~~~ 159 (325)
T cd01334 135 TLGHELAAWAAELERDLERLEEALK 159 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999444333
No 74
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=27.06 E-value=69 Score=22.51 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMY 19 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~y 19 (82)
+.++++|++.|..+.+.
T Consensus 8 l~G~liGgiiGa~aaLL 24 (115)
T COG4980 8 LFGILIGGIIGAAAALL 24 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888888775
No 75
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=27.05 E-value=1e+02 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034827 4 SATMIGALLGLGTQMYSNA 22 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNa 22 (82)
|-+.+...+|+|+-+.++.
T Consensus 10 Sl~aVFlALavGI~lG~~~ 28 (308)
T PF11382_consen 10 SLAAVFLALAVGIVLGSGP 28 (308)
T ss_pred HHHHHHHHHHHHHHhcchh
Confidence 3444445555555555554
No 76
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.23 E-value=87 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYM 29 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlm 29 (82)
+++++.|+++|-.-+...++-+|---+
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~~~f 32 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKSLSF 32 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666677776777777777664333
No 77
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.47 E-value=2e+02 Score=18.72 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 36 LLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKA 67 (82)
Q Consensus 36 Vl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~ 67 (82)
++.++.|.+..+++..-..++.++++.+-+.-
T Consensus 8 ~lii~~~~~~~~~l~~~~~~i~~~l~~i~~~i 39 (121)
T PF14276_consen 8 ILIIALSIFSNNYLNNSTDSIEEQLEQIEEAI 39 (121)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 46778888888888877888888887754433
No 78
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=24.98 E-value=1.7e+02 Score=22.88 Aligned_cols=36 Identities=11% Similarity=-0.071 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHH
Q 034827 6 TMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGL 41 (82)
Q Consensus 6 t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~ 41 (82)
.++|.++|++........-.+|+.-+|+..++..++
T Consensus 320 ~~~G~~lg~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 355 (380)
T TIGR01185 320 YLPGWGFAILLYTTARQATLLPVFMSYDRAITVLIL 355 (380)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEecHHHHHHHHHH
Confidence 344444443332222333467888777655554443
No 79
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.83 E-value=1e+02 Score=21.65 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 034827 4 SATMIGALLGLGTQMYSNAL 23 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaL 23 (82)
.+.++|.+.|+.+|-+|-.+
T Consensus 34 i~aiVg~i~Gf~~Qqls~tv 53 (101)
T KOG4112|consen 34 IGAIVGFIYGFAQQQLSVTV 53 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999888653
No 80
>PHA03419 E4 protein; Provisional
Probab=24.67 E-value=1.2e+02 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 44 VFVNQLVKWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 44 ~~~n~l~~wE~kl~~Dl~~mL~~~~ 68 (82)
.++..|.+||..+..=|+.++++-+
T Consensus 166 ~vA~~L~kWE~~f~qLV~~I~~DL~ 190 (200)
T PHA03419 166 GVALRLQKWEQQFDQLVDNIVVDLR 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999888888776644
No 81
>PF01730 UreF: UreF; InterPro: IPR002639 This family consists of the urease accessory protein, UreF. The urease enzyme (urea amidohydrolase) hydrolyses urea into ammonia and carbamic acid []. UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein [].; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_A 3CXN_B 2WGL_A 3O1Q_B.
Probab=24.34 E-value=1.2e+02 Score=20.42 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCC
Q 034827 4 SATMIGALLGLGTQMYSNALRKLPY 28 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLPl 28 (82)
..++.+.+.+....+-||++|=+|+
T Consensus 107 ~~a~~~~l~~~~~~~vsAavRL~pl 131 (146)
T PF01730_consen 107 EQALLAYLYSWASNLVSAAVRLIPL 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3467777888888999999998885
No 82
>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.30 E-value=81 Score=24.62 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 034827 3 WSATMIGALLGLGTQMYSNALR 24 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLR 24 (82)
++=.++|.++|+.+|+|-.+++
T Consensus 74 ~~EiliG~~~G~~~~l~f~a~~ 95 (258)
T COG1684 74 LSEILIGLALGFFAQLLFAALQ 95 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999886
No 83
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=23.77 E-value=3.3e+02 Score=20.67 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHH
Q 034827 4 SATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~ 50 (82)
+..++|..+|+..-.|+....+++-...+..=.+ .|.+.++..+++
T Consensus 77 ~~~l~g~a~gl~~~~~~~~~gr~~~~~~~~~al~-la~~GF~av~lv 122 (227)
T PF09490_consen 77 GNVLFGIAFGLFALAFAFLRGRLGPLSPRRLALL-LAAAGFVAVFLV 122 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHH-HHHHHHHHHHHH
Confidence 3455788888888888888888876665555544 445555554443
No 84
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=23.75 E-value=2.3e+02 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034827 4 SATMIGALLGLGTQMYS 20 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ys 20 (82)
.+.++|.++|++...+.
T Consensus 327 ~g~~~G~~lg~~~~~~l 343 (412)
T PRK11146 327 KGSLIGVVIGVVVSLNL 343 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666555443
No 85
>PRK05277 chloride channel protein; Provisional
Probab=23.62 E-value=1.8e+02 Score=23.11 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCC
Q 034827 4 SATMIGALLGLGTQMYSNALRKLP 27 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLP 27 (82)
-+.++|.+.|+.+-+|...+.++-
T Consensus 3 ~~i~iGi~~Gl~~~~f~~~~~~~~ 26 (438)
T PRK05277 3 MAAVVGTLTGLVGVAFELAVDWVQ 26 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999988887776653
No 86
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=23.49 E-value=4.3e+02 Score=22.40 Aligned_cols=27 Identities=33% Similarity=0.737 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHH-----------HHHHHhhhhcCCCc
Q 034827 3 WSATMIGALLGLG-----------TQMYSNALRKLPYM 29 (82)
Q Consensus 3 ~t~t~~Ga~~Glg-----------tq~ysNaLRKLPlm 29 (82)
+++|++|.+.|++ ++.|....|.+|++
T Consensus 105 i~atIiGfliGIaRLS~NWLi~kl~~vYvEiFRNiPpL 142 (397)
T COG4597 105 ITATIIGFLIGIARLSDNWLIRKLSTVYVEIFRNIPPL 142 (397)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhcCcHH
Confidence 5789999999986 67899999999876
No 87
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=23.47 E-value=2.2e+02 Score=19.86 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh--------cCCCccchHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALR--------KLPYMRHPWEHLLGM 39 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLR--------KLPlmR~PWehVl~~ 39 (82)
+.+.++|.++|++...+..... .+|..-+|+..++..
T Consensus 345 ~~g~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (419)
T COG0577 345 LIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLAL 389 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHH
Confidence 4566777777766666666553 356666666665544
No 88
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=23.32 E-value=81 Score=22.04 Aligned_cols=18 Identities=17% Similarity=0.599 Sum_probs=9.5
Q ss_pred cchHHHH-HHHHHHHHHHH
Q 034827 30 RHPWEHL-LGMGLGAVFVN 47 (82)
Q Consensus 30 R~PWehV-l~~G~Ga~~~n 47 (82)
-|||--| +++++|-++|-
T Consensus 81 e~PWq~VGvaAaVGlllGl 99 (104)
T COG4575 81 ENPWQGVGVAAAVGLLLGL 99 (104)
T ss_pred cCCchHHHHHHHHHHHHHH
Confidence 4899765 33344444443
No 89
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=23.29 E-value=2.4e+02 Score=22.55 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 034827 3 WSATMIGALLGLGTQMYSNAL 23 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaL 23 (82)
+.+.++|.+.|+.+-+|-+++
T Consensus 6 ~~a~~iG~~~G~~~~~f~~~i 26 (418)
T PRK01610 6 LIATVVGILAALAVAGFRHAM 26 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999987775
No 90
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=23.24 E-value=1.9e+02 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHH
Q 034827 4 SATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGM 39 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~ 39 (82)
.+|++|++.|+..-.. +-++||..+++.
T Consensus 70 ~GTliGa~~~l~l~~~--------f~~~p~l~~l~l 97 (652)
T PRK10631 70 IGTFIGCIAALVIIIA--------TIRAPLLMILLC 97 (652)
T ss_pred HHHHHHHHHHHHHHHH--------hcCChHHHHHHH
Confidence 4678888888766431 447899876433
No 91
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=23.09 E-value=97 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 034827 48 QLVKWDAQLQQDLDKMLEKAKAA 70 (82)
Q Consensus 48 ~l~~wE~kl~~Dl~~mL~~~~~a 70 (82)
...++|.+++++|+++|++-.=+
T Consensus 54 ~~~~Ye~~lE~~L~~iL~~I~Gv 76 (186)
T TIGR02830 54 EISDYEKQYENELKEILEKIEGV 76 (186)
T ss_pred hHHHHHHHHHHHHHHHHHhccCc
Confidence 36789999999999999875433
No 92
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.92 E-value=4.6e+02 Score=22.01 Aligned_cols=59 Identities=19% Similarity=0.445 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHH--HH-HhhhhcCCCccchHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 034827 4 SATMIGALLGLGTQ--MY-SNALRKLPYMRHPWEH-LLGMGL----GAVFVNQLVKWDAQLQQDLDK 62 (82)
Q Consensus 4 t~t~~Ga~~Glgtq--~y-sNaLRKLPlmR~PWeh-Vl~~G~----Ga~~~n~l~~wE~kl~~Dl~~ 62 (82)
.-+++|+.+|+..- +. -+++...++..+|.-- ++++.+ +-+++-+...|=+++|+-+.+
T Consensus 9 ~~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~~i~k 75 (356)
T COG4956 9 LFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEEQIRK 75 (356)
T ss_pred HHHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888887653 22 2334445555666555 333322 223333444444444444433
No 93
>PHA03418 hypothetical E4 protein; Provisional
Probab=22.84 E-value=1.3e+02 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 45 FVNQLVKWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 45 ~~n~l~~wE~kl~~Dl~~mL~~~~ 68 (82)
++..|.+||..+..=|+.+.++-+
T Consensus 197 VA~lL~kWE~~f~qLV~~I~~DL~ 220 (230)
T PHA03418 197 VACLLGTWEESFRQLVEDIQEDLD 220 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999998888888766543
No 94
>PRK01844 hypothetical protein; Provisional
Probab=22.75 E-value=1.3e+02 Score=19.74 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHH--HHHHhhhhcCCCcc
Q 034827 4 SATMIGALLGLGT--QMYSNALRKLPYMR 30 (82)
Q Consensus 4 t~t~~Ga~~Glgt--q~ysNaLRKLPlmR 30 (82)
.+.++|++.|+.. +.+-+=|+|=|...
T Consensus 12 ~~li~G~~~Gff~ark~~~k~lk~NPpin 40 (72)
T PRK01844 12 VALVAGVALGFFIARKYMMNYLQKNPPIN 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3455666666544 33456677776653
No 95
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=22.42 E-value=1.1e+02 Score=26.26 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=23.8
Q ss_pred hhhcCCCccc--------hHHHHHHHHHHHHHHHHHH
Q 034827 22 ALRKLPYMRH--------PWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 22 aLRKLPlmR~--------PWehVl~~G~Ga~~~n~l~ 50 (82)
++--+|.+.+ ||-+++++-+|+++.--+.
T Consensus 582 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~a~~~ 618 (631)
T PRK09765 582 GIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAIL 618 (631)
T ss_pred chhhhhhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 4556788876 8999999999999887776
No 96
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=1.2e+02 Score=21.14 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 034827 47 NQLVKWDAQLQQDLDKMLEKAKAANERRYF 76 (82)
Q Consensus 47 n~l~~wE~kl~~Dl~~mL~~~~~an~~ry~ 76 (82)
-+....|+||.+++.+.+++...+.=+-|+
T Consensus 32 ey~~~Le~KL~EE~~E~ledk~lEeLadll 61 (95)
T COG4997 32 EYKELLENKLLEEVEEFLEDKNLEELADLL 61 (95)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 356678899999999999988776655554
No 97
>COG4779 FepG ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]
Probab=22.21 E-value=53 Score=27.24 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 034827 3 WSATMIGALLGLGTQMYSNA 22 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNa 22 (82)
++|-.+||++|++-+.|.--
T Consensus 79 l~Al~~GAALGlsGAIFQs~ 98 (346)
T COG4779 79 LTALLAGAALGLSGAIFQSL 98 (346)
T ss_pred HHHHHHHHHHhcchhhhhhh
Confidence 67889999999988887643
No 98
>PF12102 DUF3578: Domain of unknown function (DUF3578); InterPro: IPR021961 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 177 to 191 amino acids in length. ; PDB: 3SSD_B 3SSE_A 3SSC_B.
Probab=22.20 E-value=80 Score=22.91 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034827 53 DAQLQQDLDKMLEKAKA 69 (82)
Q Consensus 53 E~kl~~Dl~~mL~~~~~ 69 (82)
|+.|++||.+||+-=+.
T Consensus 167 ~~~L~~DL~~~l~~Y~~ 183 (188)
T PF12102_consen 167 EEELEEDLKEMLEIYKE 183 (188)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899999999986553
No 99
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.19 E-value=2.9e+02 Score=19.50 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 034827 36 LLGMGLGAVFVNQLVK 51 (82)
Q Consensus 36 Vl~~G~Ga~~~n~l~~ 51 (82)
.+..|++++++.++..
T Consensus 36 ~~l~~~~~~~~~~~~~ 51 (199)
T PF10112_consen 36 SLLIGAVAFAVVYLFG 51 (199)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5555666666655543
No 100
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=22.12 E-value=1.4e+02 Score=25.34 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=16.4
Q ss_pred hhcCCCccch---HHHHHHHHHHHHHH
Q 034827 23 LRKLPYMRHP---WEHLLGMGLGAVFV 46 (82)
Q Consensus 23 LRKLPlmR~P---WehVl~~G~Ga~~~ 46 (82)
+--+|.+-+| |-+++++-++.++.
T Consensus 301 i~~l~~~~~~~~~~~~~i~~~v~~~v~ 327 (639)
T PRK15083 301 ILAVLAMTPKGAYFANIASVAAAMAVS 327 (639)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 7789999766 66666666655444
No 101
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=22.06 E-value=2.8e+02 Score=19.21 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 034827 8 IGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQ--LVKWDAQLQQDLDKMLEKAK 68 (82)
Q Consensus 8 ~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~--l~~wE~kl~~Dl~~mL~~~~ 68 (82)
-...+|+..-+.+--+|+.|-|.---.-+++.|+= ++|.| +..|=++..++=++.|++++
T Consensus 17 wv~~lG~wfHIvarLV~~~P~mA~~LAeiia~~Lv-l~GgYrILda~iarv~~eer~~~ear~ 78 (93)
T PF09679_consen 17 WVFSLGFWFHIVARLVYRQPEMAFFLAEIIAVGLV-LSGGYRILDAWIARVSREERAALEARQ 78 (93)
T ss_pred hhhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34567888888888787766554333333333321 12221 33454555444444344444
No 102
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=22.02 E-value=60 Score=20.76 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=12.8
Q ss_pred HHHhhhhcCCCccc
Q 034827 18 MYSNALRKLPYMRH 31 (82)
Q Consensus 18 ~ysNaLRKLPlmR~ 31 (82)
+|.++|+|-|.+|.
T Consensus 63 ly~l~llKs~alr~ 76 (103)
T PF04815_consen 63 LYILALLKSPALRP 76 (103)
T ss_dssp HHHHHHHTSTTTSC
T ss_pred HHHHHHHcchhhcC
Confidence 69999999999986
No 103
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=21.95 E-value=2.6e+02 Score=18.75 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHH
Q 034827 10 ALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQ 48 (82)
Q Consensus 10 a~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~ 48 (82)
+..+++.-+.+-+++++|.= =.|.+|.|+|.+...-
T Consensus 38 ~~~~~sf~~l~~al~~ipl~---iAYavw~GlG~v~~~l 73 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTG---IAYAIWSGVGIVLISL 73 (110)
T ss_pred HHHHHHHHHHHHHHhhCCch---hHHHHHHHHHHHHHHH
Confidence 34455666679999999984 4688999999877643
No 104
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.49 E-value=2.8e+02 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034827 41 LGAVFVNQLVKWDAQLQQDLDKM 63 (82)
Q Consensus 41 ~Ga~~~n~l~~wE~kl~~Dl~~m 63 (82)
.|+-+...|.++|..+..||+++
T Consensus 19 TgC~i~~~L~k~~~~v~~~i~~L 41 (146)
T PF08702_consen 19 TGCGIQDFLDKYERDVDKDIQEL 41 (146)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHccchHHHHHHH
Confidence 47888899999999999999994
No 105
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=21.10 E-value=2.7e+02 Score=18.77 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCccchHHHHHHH
Q 034827 9 GALLGLGTQMYSNALRKLPYMRHPWEHLLGM 39 (82)
Q Consensus 9 Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~ 39 (82)
...+|+..-+-+.-+++.|-|.---..+++.
T Consensus 18 v~~lG~wfhiVarlVy~~P~mA~~laeliav 48 (80)
T TIGR02741 18 VFSLGIWFHIVSRLVYRKPWMAFFLAELIAV 48 (80)
T ss_pred hhHhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 3456777777777777766654333333333
No 106
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=20.98 E-value=1.6e+02 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034827 43 AVFVNQLVKWDAQLQQDLDK 62 (82)
Q Consensus 43 a~~~n~l~~wE~kl~~Dl~~ 62 (82)
+.-.-.|-.||.||.++|..
T Consensus 84 ssTLdkLyaWEKKLY~EVKa 103 (312)
T PF04782_consen 84 SSTLDKLYAWEKKLYDEVKA 103 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34556899999999999865
No 107
>PF11779 DUF3317: Protein of unknown function (DUF3317); InterPro: IPR024512 Serine palmitoyltransferase (SPT) catalyzes the first committed step in sphingolipid biosynthesis. In mammals, two small subunits of serine palmitoyltransferase, ssSPTa and ssSPTb, substantially enhance the activity of SPT, conferring full enzyme activity upon it []. The 2 ssSPT isoforms share a conserved hydrophobic central domain, which is predicted to reside in the membrane. This entry represents the small subunits of serine palmitoyltransferase. It also includes a number of putative uncharacterised proteins from fungi and plants.
Probab=20.94 E-value=55 Score=19.90 Aligned_cols=15 Identities=40% Similarity=0.778 Sum_probs=11.4
Q ss_pred CCccchHHHHHHHHH
Q 034827 27 PYMRHPWEHLLGMGL 41 (82)
Q Consensus 27 PlmR~PWehVl~~G~ 41 (82)
.||=+|||-++.-.+
T Consensus 19 lyMlepwEk~~fn~~ 33 (58)
T PF11779_consen 19 LYMLEPWEKFLFNSF 33 (58)
T ss_pred eeeccHHHHHHHHHH
Confidence 478899999876544
No 108
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=20.84 E-value=1.8e+02 Score=20.05 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=38.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhcCCCc--cchHHHHHHHHHHHHHHHHHH
Q 034827 1 MAWSATMIGALLGLGTQMYSNALRKLPYM--RHPWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 1 M~~t~t~~Ga~~Glgtq~ysNaLRKLPlm--R~PWehVl~~G~Ga~~~n~l~ 50 (82)
|-+++.++|.+.=+.+.+|-=.+.|.-|- ..||--.|.+|+.+..+....
T Consensus 1 mn~~Giiigi~tFliIG~fHpiVIk~EYyfg~~~W~~FL~~Gi~~~~~Sl~~ 52 (94)
T PF14898_consen 1 MNFTGIIIGIATFLIIGLFHPIVIKGEYYFGTRIWPIFLLAGIACIIASLFV 52 (94)
T ss_pred CchhhHHHHHHHHHHHHccCeEEEEEEEecCCCcHHHHHHHHHHHHHHHHHH
Confidence 44566677766666677777778888776 569999999999998887665
No 109
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=20.82 E-value=76 Score=26.14 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh---hhcCCC
Q 034827 49 LVKWDAQLQQDLDKMLEKAKAANERRYF---GRCGHN 82 (82)
Q Consensus 49 l~~wE~kl~~Dl~~mL~~~~~an~~ry~---~~~~~~ 82 (82)
-.+|=-+ +++| .+.|.+.|+||+ +.|||+
T Consensus 8 ~r~W~ft-e~qL----~e~r~~~N~k~i~~~ee~~~~ 39 (325)
T KOG2496|consen 8 YRKWIFT-EEQL----AERRVDANQKAIQMLEEEAHN 39 (325)
T ss_pred hhccccc-HHHH----HHHHHHHHHHHHHHHHHhccC
Confidence 3445444 4444 445556666665 788885
No 110
>TIGR01726 HEQRo_perm_3TM amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family. This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.
Probab=20.37 E-value=2e+02 Score=18.04 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=14.8
Q ss_pred HHHHHhhhhcCCCccchHHHHHHHHHH
Q 034827 16 TQMYSNALRKLPYMRHPWEHLLGMGLG 42 (82)
Q Consensus 16 tq~ysNaLRKLPlmR~PWehVl~~G~G 42 (82)
+..|.+.+|-.|.+=. -.++..|++
T Consensus 45 ~~~~i~~~R~~P~lv~--l~~~~~~l~ 69 (99)
T TIGR01726 45 ATVYVELFRGTPLLVQ--LFFIYFGLP 69 (99)
T ss_pred HHHHHHHHhCchHHHH--HHHHHHHHH
Confidence 4567788888887643 344444443
No 111
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=20.22 E-value=1.3e+02 Score=22.04 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCccch
Q 034827 5 ATMIGALLGLGTQMYSNALRKLPYMRHP 32 (82)
Q Consensus 5 ~t~~Ga~~Glgtq~ysNaLRKLPlmR~P 32 (82)
-|+..|++|....++ .+-+||-..||
T Consensus 101 ltVL~aa~~~~~g~l--~~~~Lp~~~~p 126 (173)
T PF11821_consen 101 LTVLFAALGTVLGML--ILNGLPRLYHP 126 (173)
T ss_pred HHHHHHHHHHHHHHH--HHcCCCCCCCC
Confidence 355666666666665 56678888887
No 112
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=20.14 E-value=79 Score=19.77 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCc
Q 034827 4 SATMIGALLGLGTQMYSNALRKLPYM 29 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLPlm 29 (82)
|-.++|+ |+.+-+|.-++||+|=.
T Consensus 46 Te~~Vg~--gl~~~l~~~al~~~~~~ 69 (70)
T PF13244_consen 46 TEAAVGT--GLTTVLFLLALRKLPRR 69 (70)
T ss_pred HHHHHHH--hHHHHHHHHHHHHccCC
Confidence 4445554 57888999999999843
No 113
>COG3302 DmsC DMSO reductase anchor subunit [General function prediction only]
Probab=20.13 E-value=3.4e+02 Score=21.84 Aligned_cols=44 Identities=34% Similarity=0.543 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHH
Q 034827 4 SATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 4 t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~ 50 (82)
.+.+++|+.|++.=. --++|.|...++|. ++.+=+|.+++--..
T Consensus 86 ~~~lf~a~~Gl~~L~--~~l~k~~~~~~~~l-~laav~Gvvfv~~m~ 129 (281)
T COG3302 86 AGSLFFALAGLGWLL--AVLKKMTALGNLWL-LLAAVLGVVFVWMMA 129 (281)
T ss_pred HHHHHHHHHHHHHHH--HHHhcccchhHHHH-HHHHHHHHHHHHHHH
Confidence 466778888776544 46888899999999 888888888776543
No 114
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.10 E-value=4.2e+02 Score=20.54 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 034827 36 LLGMGLGAVFVNQL 49 (82)
Q Consensus 36 Vl~~G~Ga~~~n~l 49 (82)
+|+.|+|-++|..+
T Consensus 15 FlALavGI~lG~~~ 28 (308)
T PF11382_consen 15 FLALAVGIVLGSGP 28 (308)
T ss_pred HHHHHHHHHhcchh
Confidence 35566666666554
No 115
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=20.01 E-value=89 Score=22.52 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=23.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 28 YMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDK 62 (82)
Q Consensus 28 lmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~ 62 (82)
..-.||.||=++-=.-...|...+-.+-+.++||-
T Consensus 8 ~vTrp~kHVdAIkEAlsLLn~s~dt~a~mnEtVeV 42 (121)
T smart00040 8 PVTRPWKHVDAIKEALSLLNDSRDTAAVMNETVEV 42 (121)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCchHhHhcchHHH
Confidence 34579999988776666666665555555555554
Done!