Query 034827
Match_columns 82
No_of_seqs 23 out of 25
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yz4_A DUSP15, dual specificit 47.8 20 0.00067 22.7 3.4 24 44-67 133-156 (160)
2 3eff_K Voltage-gated potassium 46.3 54 0.0018 20.7 6.1 18 7-24 81-98 (139)
3 3m73_A Tellurite resistance pr 46.3 82 0.0028 22.8 7.4 37 3-42 9-45 (314)
4 3ldt_A Outer membrane protein, 41.4 9 0.00031 25.8 1.1 23 39-62 14-36 (169)
5 2rmg_A Urocortin-2; CRF ligand 38.9 12 0.00041 21.3 1.2 14 65-78 24-37 (38)
6 1ots_A Voltage-gated CLC-type 32.0 1E+02 0.0034 23.7 5.7 43 30-72 416-461 (465)
7 2rmh_A Urocortin-3; CRF ligand 30.1 16 0.00054 20.8 0.7 14 65-78 24-37 (38)
8 2j5d_A BNIP3 TM, BCL2/adenovir 29.4 45 0.0015 19.5 2.6 18 33-50 26-43 (45)
9 2q73_A MAZG, hypothetical prot 27.0 31 0.0011 21.3 1.7 31 48-78 65-95 (100)
10 4ene_A CLC-EC1, H(+)/CL(-) exc 26.9 95 0.0032 23.8 4.8 50 3-52 22-84 (446)
11 2q5z_A MAZG, hypothetical prot 25.9 33 0.0011 21.7 1.7 27 49-75 86-112 (114)
12 3b5d_A Multidrug transporter E 25.3 1.3E+02 0.0043 18.6 5.0 34 11-47 39-72 (110)
13 1wrm_A Dual specificity phosph 25.1 76 0.0026 20.1 3.4 24 43-66 131-154 (165)
14 2fyu_K Ubiquinol-cytochrome C 24.0 95 0.0032 18.4 3.4 27 3-29 19-48 (56)
15 3ssc_A ECOKMCRBC, 5-methylcyto 23.5 45 0.0015 24.1 2.2 16 53-68 134-149 (170)
16 3ehu_C Corticoliberin; G prote 23.0 36 0.0012 17.1 1.2 13 66-78 7-19 (21)
No 1
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=47.81 E-value=20 Score=22.72 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 44 VFVNQLVKWDAQLQQDLDKMLEKA 67 (82)
Q Consensus 44 ~~~n~l~~wE~kl~~Dl~~mL~~~ 67 (82)
.|..||.+||.++.+++.+-|.++
T Consensus 133 ~f~~qL~~~e~~~~~~~~~~l~~~ 156 (160)
T 1yz4_A 133 GFRQQLEEFGWASSQKLRRQLEER 156 (160)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 588999999999999888866554
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=46.34 E-value=54 Score=20.74 Aligned_cols=18 Identities=6% Similarity=0.051 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 034827 7 MIGALLGLGTQMYSNALR 24 (82)
Q Consensus 7 ~~Ga~~Glgtq~ysNaLR 24 (82)
+++.++|..+..+++..+
T Consensus 81 ~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 81 SFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 3
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=46.25 E-value=82 Score=22.81 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLG 42 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~G 42 (82)
+++..+|.++|.+. -+|+++++|+ +.||.+.++..+.
T Consensus 9 ~p~~~F~~~MGtg~--la~~~~~~~~-~~~~~~~i~~~l~ 45 (314)
T 3m73_A 9 LPTGYFGIPLGLAA--LSLAWFHLEN-LFPAARMVSDVLG 45 (314)
T ss_dssp SCGGGGHHHHHHHH--HHHHHHTTTT-TCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHH-hCCchHHHHHHHH
Confidence 35667788887665 5899999998 5688887777666
No 4
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=41.44 E-value=9 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 39 MGLGAVFVNQLVKWDAQLQQDLDK 62 (82)
Q Consensus 39 ~G~Ga~~~n~l~~wE~kl~~Dl~~ 62 (82)
..+|+.+|+++.+-|+ |++++..
T Consensus 14 ~~~g~~ig~~~d~q~~-l~~~l~~ 36 (169)
T 3ldt_A 14 GTVGLVASIYRDSKRK-IIRDLQK 36 (169)
T ss_dssp ---CCTTHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhh
Confidence 4456677777776666 6666543
No 5
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=38.94 E-value=12 Score=21.32 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHHhhhhhhhhhh
Q 034827 65 EKAKAANERRYFGR 78 (82)
Q Consensus 65 ~~~~~an~~ry~~~ 78 (82)
.++++++|+++|++
T Consensus 24 ~r~qAa~Na~lla~ 37 (38)
T 2rmg_A 24 AREQATTNARILAR 37 (38)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHhc
Confidence 46778999999875
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=32.01 E-value=1e+02 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhh
Q 034827 30 RHPWEHLLGMGLGAVFVNQLVKW---DAQLQQDLDKMLEKAKAANE 72 (82)
Q Consensus 30 R~PWehVl~~G~Ga~~~n~l~~w---E~kl~~Dl~~mL~~~~~an~ 72 (82)
-.+.++++-+-+.+.+.+...++ +--++..+++++++++.+..
T Consensus 416 tg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~~~~~~~~~~ 461 (465)
T 1ots_A 416 TDNYQLILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQL 461 (465)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHCC-
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhhhhh
Confidence 34566777666777766666642 22234444444554443333
No 7
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=30.10 E-value=16 Score=20.81 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=10.9
Q ss_pred HHHHhhhhhhhhhh
Q 034827 65 EKAKAANERRYFGR 78 (82)
Q Consensus 65 ~~~~~an~~ry~~~ 78 (82)
.++++++|+++|+.
T Consensus 24 ~r~qAa~Na~lla~ 37 (38)
T 2rmh_A 24 LRAQAAANAHLMAQ 37 (38)
T ss_dssp HHHHHHTTSSSSSC
T ss_pred HHHHHHHhHHHHhc
Confidence 46678899998874
No 8
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=29.40 E-value=45 Score=19.50 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034827 33 WEHLLGMGLGAVFVNQLV 50 (82)
Q Consensus 33 WehVl~~G~Ga~~~n~l~ 50 (82)
-+|++..|+|-++|-.+.
T Consensus 26 ~shiL~~GlgIyIGkRLs 43 (45)
T 2j5d_A 26 LSHLLAIGLGIYIGRRLT 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcceEEeeeeec
Confidence 379999999999997664
No 9
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=27.03 E-value=31 Score=21.25 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 034827 48 QLVKWDAQLQQDLDKMLEKAKAANERRYFGR 78 (82)
Q Consensus 48 ~l~~wE~kl~~Dl~~mL~~~~~an~~ry~~~ 78 (82)
+++..-..+.=|+++.|++.-..|++||=..
T Consensus 65 ~l~~lA~~lgiDle~al~~k~~~n~~kyp~~ 95 (100)
T 2q73_A 65 YVCALANIHGVNLEKTHELKEVLNKVKYNRH 95 (100)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhcccCCCc
Confidence 3455557788899999999999999999543
No 10
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=26.86 E-value=95 Score=23.80 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCc---------cchHH-H---HHHHHHHHHHHHHHHHH
Q 034827 3 WSATMIGALLGLGTQMYSNALRKLPYM---------RHPWE-H---LLGMGLGAVFVNQLVKW 52 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlm---------R~PWe-h---Vl~~G~Ga~~~n~l~~w 52 (82)
+-+.++|.+.|+..-+|...+..+--. .+||- . ++..++++.+..++.++
T Consensus 22 ~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (446)
T 4ene_A 22 FMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRK 84 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999998887776654322 34553 2 22335566666667644
No 11
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=25.92 E-value=33 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 034827 49 LVKWDAQLQQDLDKMLEKAKAANERRY 75 (82)
Q Consensus 49 l~~wE~kl~~Dl~~mL~~~~~an~~ry 75 (82)
++..-..+.=|+++.+++....|.+||
T Consensus 86 l~~LA~~lgiDle~al~~k~~K~~~Ry 112 (114)
T 2q5z_A 86 VCALANIHGVNLEKTRELKEVLNKVKY 112 (114)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 344446677788888888888888887
No 12
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=25.28 E-value=1.3e+02 Score=18.65 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHH
Q 034827 11 LLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVN 47 (82)
Q Consensus 11 ~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n 47 (82)
+.++..-+++-++|++|+=. -|.++.|+|.++..
T Consensus 39 ~~~~~~~~~~~al~~~p~s~---ay~i~~g~~~v~~~ 72 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGI---AYAIWSGVGIVLIS 72 (110)
T ss_pred HHHHHHHHHHHHHHhCChhh---HHHHHhhHHHHHHH
Confidence 44666677788888888743 45556666665543
No 13
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=25.14 E-value=76 Score=20.14 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034827 43 AVFVNQLVKWDAQLQQDLDKMLEK 66 (82)
Q Consensus 43 a~~~n~l~~wE~kl~~Dl~~mL~~ 66 (82)
..|..||.+||.++......-|.+
T Consensus 131 ~~f~~qL~~~e~~l~~~~~~~~~~ 154 (165)
T 1wrm_A 131 VGFQRQLQEFEKHEVHQYRQWLKE 154 (165)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999988776665543
No 14
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=23.99 E-value=95 Score=18.39 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHh---hhhcCCCc
Q 034827 3 WSATMIGALLGLGTQMYSN---ALRKLPYM 29 (82)
Q Consensus 3 ~t~t~~Ga~~Glgtq~ysN---aLRKLPlm 29 (82)
-|+...|++.|++.=.|.. .|.++|+.
T Consensus 19 psa~~~Gaaa~v~~ly~tdwr~IL~~IP~i 48 (56)
T 2fyu_K 19 PTASLWGAVGAVGLVWATDWRLILDWVPYI 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHTSSSSC
T ss_pred hhhhhhhhhhhhheeeeccHHHHHhhcCcc
Confidence 3677888888888777765 45666654
No 15
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=23.54 E-value=45 Score=24.07 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034827 53 DAQLQQDLDKMLEKAK 68 (82)
Q Consensus 53 E~kl~~Dl~~mL~~~~ 68 (82)
+++|.+||++|++.=+
T Consensus 134 ~~~L~~DL~eiI~~Yk 149 (170)
T 3ssc_A 134 YTRFASMLDNIINDYK 149 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6789999999998655
No 16
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=23.03 E-value=36 Score=17.09 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=9.8
Q ss_pred HHHhhhhhhhhhh
Q 034827 66 KAKAANERRYFGR 78 (82)
Q Consensus 66 ~~~~an~~ry~~~ 78 (82)
++++.+|+++|+.
T Consensus 7 ~qQA~~NRk~md~ 19 (21)
T 3ehu_C 7 AQQAHSNRKLMEI 19 (26)
T ss_pred HHHHHHhHHHHHh
Confidence 4567888888874
Done!