BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034832
MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG
PSFPVSIQSLSRALDQYNKVAH

High Scoring Gene Products

Symbol, full name Information P value
AT2G42710 protein from Arabidopsis thaliana 4.3e-20
SPO_3513
ribosomal protein L1 		protein from Ruegeria pomeroyi DSS-3 0.00042

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034832
        (82 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2041519 - symbol:AT2G42710 species:3702 "Arabi...   242  4.3e-20   1
TIGR_CMR|SPO_3513 - symbol:SPO_3513 "ribosomal protein L1...    92  0.00042   1


>TAIR|locus:2041519 [details] [associations]
            symbol:AT2G42710 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0015934 "large
            ribosomal subunit" evidence=IEA;ISS] [GO:0006354 "DNA-dependent
            transcription, elongation" evidence=RCA] InterPro:IPR002143
            InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
            InterPro:IPR023674 Pfam:PF00687 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
            GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
            Gene3D:3.40.50.790 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
            HSSP:P27150 EMBL:AY091124 EMBL:AY113995 EMBL:AK118309
            IPI:IPI00522914 RefSeq:NP_850375.1 UniGene:At.36979
            ProteinModelPortal:Q8RWT4 SMR:Q8RWT4 STRING:Q8RWT4 PaxDb:Q8RWT4
            PRIDE:Q8RWT4 EnsemblPlants:AT2G42710.1 GeneID:818871
            KEGG:ath:AT2G42710 TAIR:At2g42710 InParanoid:Q8RWT4 OMA:KYAGYVN
            PhylomeDB:Q8RWT4 ProtClustDB:CLSN2680207 Genevestigator:Q8RWT4
            Uniprot:Q8RWT4
        Length = 415

 Score = 242 (90.2 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 48/80 (60%), Positives = 57/80 (71%)

Query:     1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMG 60
             MD TS +HV LGK+S  EE LRENVGAF+N            TSK+AGYVN+FH+CSTMG
Sbjct:   333 MDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMG 392

Query:    61 PSFPVSIQSLSRALDQYNKV 80
               +PVSIQSLSRA D + K+
Sbjct:   393 KGYPVSIQSLSRAADLHTKL 412


>TIGR_CMR|SPO_3513 [details] [associations]
            symbol:SPO_3513 "ribosomal protein L1" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002143
            InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
            InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
            GO:GO:0006417 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
            GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
            SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
            Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
            TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
            HAMAP:MF_01318_B RefSeq:YP_168708.1 ProteinModelPortal:Q5LMQ0
            SMR:Q5LMQ0 GeneID:3194818 KEGG:sil:SPO3513 PATRIC:23380497
            Uniprot:Q5LMQ0
        Length = 232

 Score = 92 (37.4 bits), Expect = 0.00042, P = 0.00042
 Identities = 24/65 (36%), Positives = 30/65 (46%)

Query:     7 VHVGLGKVSLKEELLRENVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVS 66
             +H G+GKVS  E  L ENV AFV+            T     Y+    + STMGP   V 
Sbjct:   171 IHAGVGKVSFDEAKLVENVRAFVDAVAKAKPAGAKGT-----YLKKIALSSTMGPGVSVD 225

Query:    67 IQSLS 71
             + S S
Sbjct:   226 VASAS 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        70   0.00091  102 3  11 22  0.46    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  83 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.81u 0.14s 6.95t   Elapsed:  00:00:00
  Total cpu time:  6.81u 0.14s 6.95t   Elapsed:  00:00:00
  Start:  Fri May 10 02:10:50 2013   End:  Fri May 10 02:10:50 2013

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