BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034832
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4R8K2|RL1_PHEZH 50S ribosomal protein L1 OS=Phenylobacterium zucineum (strain HLK1)
GN=rplA PE=3 SV=1
Length = 229
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S EE L NV A V+AL AKP+G K T YV + STMGP F +
Sbjct: 169 VHAGIGKASFTEEQLTANVKAMVDALNKAKPSGAKGT-----YVKKVSLSSTMGPGFKID 223
Query: 67 IQSL 70
+ SL
Sbjct: 224 VASL 227
>sp|B6IRP3|RL1_RHOCS 50S ribosomal protein L1 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplA PE=3 SV=1
Length = 235
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
+ T VH G+GK S E+ L EN+ AFV+A+ AKP+G K T Y+ + STMGP
Sbjct: 166 EKTGIVHAGVGKASFSEQALEENIRAFVSAINRAKPSGAKGT-----YIEKVSLSSTMGP 220
Query: 62 SFPVSIQSLSRAL 74
+ I +L +L
Sbjct: 221 GIKLDIPALVASL 233
>sp|Q5LMQ0|RL1_RUEPO 50S ribosomal protein L1 OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rplA PE=3 SV=1
Length = 232
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GKVS E L ENV AFV+A+ AKPAG K T Y+ + STMGP V
Sbjct: 171 IHAGVGKVSFDEAKLVENVRAFVDAVAKAKPAGAKGT-----YLKKIALSSTMGPGVSVD 225
Query: 67 IQSLS 71
+ S S
Sbjct: 226 VASAS 230
>sp|Q1GT68|RL1_SPHAL 50S ribosomal protein L1 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplA PE=3 SV=1
Length = 232
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S EE LR+N AFV+A++ AKPAG K YV + S+MGP V
Sbjct: 171 IHAGLGKLSFGEEKLRQNFDAFVDAIVKAKPAGAKGK-----YVRKVALSSSMGPGVKVD 225
Query: 67 IQSLSRA 73
L+ A
Sbjct: 226 TAELTGA 232
>sp|B0T064|RL1_CAUSK 50S ribosomal protein L1 OS=Caulobacter sp. (strain K31) GN=rplA
PE=3 SV=1
Length = 229
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GKVS +E L NV A V+AL+ AKPAG K YV + STMGP F +
Sbjct: 169 VHAGIGKVSFTDEALLINVKAMVDALVKAKPAGAKGI-----YVKRIGLSSTMGPGFKID 223
Query: 67 IQSLS 71
I S++
Sbjct: 224 IASVN 228
>sp|Q2W2H8|RL1_MAGSA 50S ribosomal protein L1 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplA PE=3 SV=1
Length = 230
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S EE L ENV AFV+A+ AKP G K T Y+ + STMGP +
Sbjct: 171 VHAGIGKASFSEEKLAENVKAFVDAITKAKPQGAKGT-----YLKKVSLSSTMGPGVKLD 225
Query: 67 IQSLS 71
+ +L+
Sbjct: 226 VATLA 230
>sp|Q5NPL0|RL1_ZYMMO 50S ribosomal protein L1 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rplA PE=3 SV=1
Length = 233
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D T +H G+GK S E +R N A ++ALL AKPAG K YV + STMG
Sbjct: 165 VDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGR-----YVKKVAISSTMG 219
Query: 61 PSFPVSIQSLSRA 73
P + I L A
Sbjct: 220 PGVSIDIADLPAA 232
>sp|B8G990|RL1_CHLAD 50S ribosomal protein L1 OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=rplA PE=3 SV=1
Length = 237
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T +HV +GKVS + L EN+ A + A+ AKP+G K T Y+ S + STMGP
Sbjct: 169 DKTGILHVAIGKVSFTSQQLSENLAALMEAVKAAKPSGAKGT-----YIRSVTLTSTMGP 223
Query: 62 SFPVSI 67
PV +
Sbjct: 224 GVPVDL 229
>sp|B2V7M3|RL1_SULSY 50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=rplA PE=3 SV=1
Length = 242
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D T N+HV +GK+S ++ L+EN+ A V+A+L AKP G K Y+ + + +TM
Sbjct: 169 VDKTGNLHVPVGKISFEDHKLKENILAVVDAVLKAKPPGAK-----GQYIRNVVLKTTMS 223
Query: 61 PSFPVSIQSLSRALD 75
PS ++ L +AL+
Sbjct: 224 PSVKLNPAELQKALE 238
>sp|Q2K9M7|RL1_RHIEC 50S ribosomal protein L1 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplA PE=3 SV=1
Length = 233
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S + L EN+ AF +A++ AKPAG K YV + STMGP +
Sbjct: 169 VHAGIGKASFDAKALEENIRAFADAVIKAKPAGAK-----GNYVKRVAISSTMGPGVKIE 223
Query: 67 IQSLSRA 73
+ S++ A
Sbjct: 224 VGSVTAA 230
>sp|B3PW56|RL1_RHIE6 50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652)
GN=rplA PE=3 SV=1
Length = 233
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S + L EN+ AF +A++ AKPAG K YV + STMGP +
Sbjct: 169 VHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGN-----YVKRVAISSTMGPGVKIE 223
Query: 67 IQSLSRA 73
+ S++ A
Sbjct: 224 VGSVTAA 230
>sp|A8GQW1|RL1_RICRS 50S ribosomal protein L1 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rplA PE=3 SV=1
Length = 239
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKPAGLK + Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGS-----YLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|B0BWA6|RL1_RICRO 50S ribosomal protein L1 OS=Rickettsia rickettsii (strain Iowa)
GN=rplA PE=3 SV=1
Length = 239
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKPAGLK + Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGS-----YLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|C4K1P2|RL1_RICPU 50S ribosomal protein L1 OS=Rickettsia peacockii (strain Rustic)
GN=rplA PE=3 SV=1
Length = 239
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKPAGLK + Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGS-----YLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|Q92J89|RL1_RICCN 50S ribosomal protein L1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rplA PE=3 SV=1
Length = 239
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKPAGLK + Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGS-----YLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|C3PMH4|RL1_RICAE 50S ribosomal protein L1 OS=Rickettsia africae (strain ESF-5)
GN=rplA PE=3 SV=1
Length = 239
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKPAGLK Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLK-----GSYLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|Q5L420|RL1_GEOKA 50S ribosomal protein L1 OS=Geobacillus kaustophilus (strain
HTA426) GN=rplA PE=3 SV=1
Length = 233
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D N+HV +GKVS E L EN A A+L AKPA K T YV + + STMG
Sbjct: 165 VDKAGNIHVPIGKVSFDNEKLAENFAAVYEAILKAKPAAAKGT-----YVKNVTITSTMG 219
Query: 61 PSFPVSIQSLSRA 73
P V +++ A
Sbjct: 220 PGIKVDPSTVAVA 232
>sp|Q7NK78|RL1_GLOVI 50S ribosomal protein L1 OS=Gloeobacter violaceus (strain PCC 7421)
GN=rplA PE=3 SV=1
Length = 238
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T VH+ GKVS E L +N+ + +A+ AKP+G K Y +FH+ STMGP
Sbjct: 166 DRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAK-----GRYWRTFHIKSTMGP 220
Query: 62 SFPVSIQSL 70
S + I +L
Sbjct: 221 SIEIDINAL 229
>sp|Q4UKD1|RL1_RICFE 50S ribosomal protein L1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rplA PE=3 SV=1
Length = 239
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKPAGLK + Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGS-----YLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|A4WVL9|RL1_RHOS5 50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rplA PE=3 SV=1
Length = 232
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GK+S E L +NV AFV+A+ AKPAG K T Y+ + STMGP V
Sbjct: 171 IHAGVGKISFDAEKLAQNVRAFVDAVNRAKPAGAKGT-----YLKKVSLSSTMGPGVSVD 225
Query: 67 IQSLS 71
+ S +
Sbjct: 226 LASAT 230
>sp|P04447|RL1_GEOSE 50S ribosomal protein L1 OS=Geobacillus stearothermophilus GN=rplA
PE=1 SV=2
Length = 233
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D N+HV +GKVS E L EN A AL+ AKPA K T YV + + STMG
Sbjct: 165 VDKAGNIHVPIGKVSFDNEKLAENFAAVYEALIKAKPAAAKGT-----YVKNVTITSTMG 219
Query: 61 PSFPVSIQSLSRA 73
P V +++ A
Sbjct: 220 PGIKVDPTTVAVA 232
>sp|Q2RQV0|RL1_RHORT 50S ribosomal protein L1 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplA PE=3 SV=1
Length = 233
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+G+ S EE L +NV AFV+A+ AKP G K T Y+ + STMGP V+
Sbjct: 171 VHAGVGRASFTEEKLVDNVRAFVDAINKAKPTGAKGT-----YLKKVSLSSTMGPGLKVN 225
Query: 67 IQSLSRA 73
+ ++S A
Sbjct: 226 LGTISGA 232
>sp|B9LI30|RL1_CHLSY 50S ribosomal protein L1 OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=rplA PE=3 SV=1
Length = 237
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T +HV +GKVS + L EN A ++A+ AKP+G K T Y+ S + STMGP
Sbjct: 169 DKTGILHVAIGKVSFTPQQLSENFVALMDAVKAAKPSGAKGT-----YIRSVTLTSTMGP 223
Query: 62 SFPVS 66
PV
Sbjct: 224 GVPVD 228
>sp|A9WFP7|RL1_CHLAA 50S ribosomal protein L1 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rplA PE=3 SV=1
Length = 237
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T +HV +GKVS + L EN A ++A+ AKP+G K T Y+ S + STMGP
Sbjct: 169 DKTGILHVAIGKVSFTPQQLSENFVALMDAVKAAKPSGAKGT-----YIRSVTLTSTMGP 223
Query: 62 SFPVS 66
PV
Sbjct: 224 GVPVD 228
>sp|Q28UY1|RL1_JANSC 50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA
PE=3 SV=1
Length = 232
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S E L ENV AFV+A+ AKP+G K T Y+ ++ STMGP +S
Sbjct: 171 VHAGVGKASFTEAQLVENVRAFVDAVSKAKPSGSKGT-----YMQKINLTSTMGPGVSLS 225
Query: 67 IQSLS 71
+++ +
Sbjct: 226 VENAT 230
>sp|P29393|RL1_THEMA 50S ribosomal protein L1 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rplA PE=3 SV=1
Length = 233
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T N+H+ +GK S E L+EN+ A + ++ KPAG+K ++ + STMGP
Sbjct: 167 DKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVK-----GQFIKKVVLASTMGP 221
Query: 62 SFPVSIQSL 70
+++QSL
Sbjct: 222 GIKLNLQSL 230
>sp|B1ZFX0|RL1_METPB 50S ribosomal protein L1 OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=rplA PE=3 SV=1
Length = 232
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GKVS E+ L EN+ AF +A+ AKPAG K T Y+ + STMGP V
Sbjct: 171 IHAGVGKVSFDEQKLVENIKAFADAVAKAKPAGAKGT-----YIQRIAVTSTMGPGVKVE 225
>sp|B9KFG4|RL1_CAMLR 50S ribosomal protein L1 OS=Campylobacter lari (strain RM2100 / D67
/ ATCC BAA-1060) GN=rplA PE=3 SV=1
Length = 233
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D N+H GLGKVS +E L+EN+ AFV A+ KPA K Y+ + + TM
Sbjct: 165 VDKQGNIHAGLGKVSFTQEQLKENMSAFVKAINKHKPAAAK-----GRYIKNASLSLTMS 219
Query: 61 PSFPVSIQSL 70
PS + Q L
Sbjct: 220 PSLSLDTQEL 229
>sp|B5ZYS4|RL1_RHILW 50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplA PE=3 SV=1
Length = 233
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S + L EN+ AF +A++ AKPAG K YV + STMGP +
Sbjct: 169 VHAGIGKASFDAKALEENIRAFADAVIKAKPAGAK-----GNYVKRVAISSTMGPGVKIE 223
Query: 67 IQSLS 71
+ S++
Sbjct: 224 VGSVT 228
>sp|Q98N69|RL1_RHILO 50S ribosomal protein L1 OS=Rhizobium loti (strain MAFF303099)
GN=rplA PE=3 SV=1
Length = 232
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GKVS + L EN+ AF +A+ AKPAG K YV + STMGP +
Sbjct: 171 VHAGVGKVSFDVKALEENIRAFADAVTKAKPAGAK-----GNYVKKVSVTSTMGPGLKLD 225
Query: 67 IQSLS 71
+ +L+
Sbjct: 226 VSTLA 230
>sp|Q9ZE23|RL1_RICPR 50S ribosomal protein L1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rplA PE=3 SV=1
Length = 238
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKP GLK Y+ + ++ STMG S +
Sbjct: 179 IHAGLGKLSFSDQDLLKNLNAFIGAVIKAKPVGLK-----GNYLKAIYLSSTMGASVQID 233
Query: 67 IQSLS 71
+ S+S
Sbjct: 234 LTSIS 238
>sp|B9JDR8|RL1_AGRRK 50S ribosomal protein L1 OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=rplA PE=3 SV=1
Length = 232
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S + L EN+ AF +A++ AKPAG K YV + STMGP +
Sbjct: 169 VHAGIGKASFDAKALEENIRAFADAVIKAKPAGAK-----GNYVKRVAISSTMGPGVKIE 223
Query: 67 IQSLS 71
+ S++
Sbjct: 224 LASVT 228
>sp|A8LLK0|RL1_DINSH 50S ribosomal protein L1 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rplA PE=3 SV=1
Length = 232
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S E L ENV AFV+A+ AKP+G K + Y+ + STMGP V+
Sbjct: 171 VHAGVGKASFDEAKLVENVRAFVDAVSKAKPSGAKGS-----YMKKIALSSTMGPGVTVA 225
Query: 67 IQSLS 71
+ S +
Sbjct: 226 VDSAT 230
>sp|Q11HB0|RL1_MESSB 50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA
PE=3 SV=1
Length = 232
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GKVS E + ENV AF +A++ AKP+G K Y+ + STMGP +
Sbjct: 171 VHAGVGKVSFDENAIAENVRAFADAVIKAKPSGAK-----GNYLKRVSITSTMGPGLKID 225
Query: 67 IQSLS 71
+L+
Sbjct: 226 PSTLA 230
>sp|A8EXK5|RL1_RICCK 50S ribosomal protein L1 OS=Rickettsia canadensis (strain McKiel)
GN=rplA PE=3 SV=1
Length = 239
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ F+ A++ AKPAGLK + Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLQNLNEFIEAVIKAKPAGLKGS-----YLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|B1L938|RL1_THESQ 50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA
PE=3 SV=1
Length = 233
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T N+H+ +GK S E L+EN+ A + ++ KPAG+K ++ + STMGP
Sbjct: 167 DKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVK-----GQFIKKAVLSSTMGP 221
Query: 62 SFPVSIQSL 70
+++QSL
Sbjct: 222 GIKLNLQSL 230
>sp|A8GMA4|RL1_RICAH 50S ribosomal protein L1 OS=Rickettsia akari (strain Hartford)
GN=rplA PE=3 SV=1
Length = 239
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKP+GLK Y+ + ++ STMG S +
Sbjct: 180 IHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPSGLK-----GSYLKAMYLSSTMGASVQID 234
Query: 67 IQSLS 71
+ S++
Sbjct: 235 LTSIA 239
>sp|A4IJH7|RL1_GEOTN 50S ribosomal protein L1 OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=rplA PE=3 SV=1
Length = 233
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D N+HV +GKVS E L EN A+L AKPA K T YV + + STMG
Sbjct: 165 VDKAGNIHVPIGKVSFDNEKLAENFATIYEAILKAKPAAAKGT-----YVKNVTITSTMG 219
Query: 61 PSFPVSIQSLSRA 73
P V +++ A
Sbjct: 220 PGIKVDPTTVAVA 232
>sp|B0S062|RL1_FINM2 50S ribosomal protein L1 OS=Finegoldia magna (strain ATCC 29328)
GN=rplA PE=3 SV=1
Length = 233
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D ++ +HV +GKVS EE + EN+ A + A+L AKPA K Y+ S + STMGP
Sbjct: 167 DKSNIIHVPVGKVSFGEEKIAENINALMQAILKAKPASSK-----GKYIRSLTIASTMGP 221
Query: 62 SFPV 65
V
Sbjct: 222 GIKV 225
>sp|A1B012|RL1_PARDP 50S ribosomal protein L1 OS=Paracoccus denitrificans (strain Pd
1222) GN=rplA PE=3 SV=1
Length = 233
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S + E L EN+ AFV+A+ AKP+G K T YV + STMGP +
Sbjct: 171 VHAGVGKASFEIEKLAENIRAFVDAVNRAKPSGAKGT-----YVKKVSISSTMGPGVSLD 225
Query: 67 IQSLSRA 73
+ S + A
Sbjct: 226 LGSTAAA 232
>sp|A9H3T0|RL1_GLUDA 50S ribosomal protein L1 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplA PE=3 SV=1
Length = 231
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GK S + + L EN+ AFV+A+ AKP G K T Y+ + STMGP V
Sbjct: 170 IHAGIGKASFEGDKLAENIRAFVDAVQKAKPTGAKGT-----YLRKAALSSTMGPGIRVD 224
Query: 67 IQSLS 71
+ + S
Sbjct: 225 VSAFS 229
>sp|B9KL80|RL1_RHOSK 50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=rplA PE=3 SV=1
Length = 232
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GK+S + + L +NV AFV+A+ AKPAG K T Y+ + STMGP V
Sbjct: 171 IHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGT-----YLKKVSLSSTMGPGVSVD 225
Query: 67 IQSLS 71
+ S +
Sbjct: 226 LTSAT 230
>sp|Q3J5T3|RL1_RHOS4 50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1
Length = 232
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GK+S + + L +NV AFV+A+ AKPAG K T Y+ + STMGP V
Sbjct: 171 IHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGT-----YLKKVSLSSTMGPGVSVD 225
Query: 67 IQSLS 71
+ S +
Sbjct: 226 LTSAT 230
>sp|A3PGI6|RL1_RHOS1 50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1
Length = 232
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GK+S + + L +NV AFV+A+ AKPAG K T Y+ + STMGP V
Sbjct: 171 IHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGT-----YLKKVSLSSTMGPGVSVD 225
Query: 67 IQSLS 71
+ S +
Sbjct: 226 LTSAT 230
>sp|B9JVM5|RL1_AGRVS 50S ribosomal protein L1 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rplA PE=3 SV=1
Length = 231
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H G+GK S + + L EN+ AF +A++ AKPAG K YV + STMGP +
Sbjct: 171 IHAGIGKASFEAKALEENIKAFADAVIKAKPAGAK-----GNYVKRVAISSTMGPGVKID 225
Query: 67 IQSLS 71
S++
Sbjct: 226 PSSVT 230
>sp|C5D3Q5|RL1_GEOSW 50S ribosomal protein L1 OS=Geobacillus sp. (strain WCH70) GN=rplA
PE=3 SV=1
Length = 233
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
+D N+HV +GKVS E L EN A+L AKPA K T YV + + STMG
Sbjct: 165 VDKAGNIHVPIGKVSFDNEKLAENFTTIYEAILKAKPAAAKGT-----YVKNVTITSTMG 219
Query: 61 PSFPVSIQSLSRA 73
P V +++ A
Sbjct: 220 PGIKVDPSTVAVA 232
>sp|Q68XN1|RL1_RICTY 50S ribosomal protein L1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplA PE=3 SV=1
Length = 237
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
+H GLGK+S ++ L +N+ AF+ A++ AKP GLK Y+ + ++ STMG S +
Sbjct: 179 IHAGLGKLSFSDQDLLKNLNAFIGAVIKAKPVGLK-----GSYLKAIYLSSTMGASVQID 233
Query: 67 IQSL 70
+ S+
Sbjct: 234 LTSI 237
>sp|B1LY47|RL1_METRJ 50S ribosomal protein L1 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplA PE=3 SV=1
Length = 232
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GKVS + L EN+ AF +A+ AKPAG K T YV + STMGP V
Sbjct: 171 VHAGVGKVSFDADKLVENIKAFADAVAKAKPAGAKGT-----YVQRIAVTSTMGPGVKVE 225
>sp|A5IJW6|RL1_THEP1 50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1
Length = 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61
D T N+H+ +GK S E L+EN+ + V ++ KPAG+K ++ + STMGP
Sbjct: 167 DKTGNIHIPVGKRSFDNEKLKENIISAVRQIMQMKPAGVK-----GQFIKKAVLSSTMGP 221
Query: 62 SFPVSIQSL 70
+++QSL
Sbjct: 222 GIKLNLQSL 230
>sp|Q92QI0|RL1_RHIME 50S ribosomal protein L1 OS=Rhizobium meliloti (strain 1021)
GN=rplA PE=3 SV=1
Length = 232
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66
VH G+GK S + L EN+ AF +A++ AKP G K YV + STMGP V
Sbjct: 171 VHAGIGKASFDAKALEENIRAFADAVIKAKPTGAK-----GNYVKRVAVSSTMGPGLKVD 225
Query: 67 IQSLSRA 73
++S A
Sbjct: 226 PATISAA 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,433,783
Number of Sequences: 539616
Number of extensions: 861000
Number of successful extensions: 2888
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 790
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)