Query 034832
Match_columns 82
No_of_seqs 123 out of 903
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0081 RplA Ribosomal protein 99.9 2.8E-23 6.1E-28 152.4 7.3 62 1-67 166-227 (228)
2 CHL00129 rpl1 ribosomal protei 99.9 7.9E-23 1.7E-27 149.6 7.3 65 1-70 164-228 (229)
3 PRK05424 rplA 50S ribosomal pr 99.9 5.2E-22 1.1E-26 145.0 8.2 65 1-70 164-228 (230)
4 TIGR01169 rplA_bact ribosomal 99.9 5E-22 1.1E-26 144.9 7.3 64 1-69 163-226 (227)
5 PTZ00225 60S ribosomal protein 99.8 3.2E-19 7E-24 129.4 7.1 58 1-65 156-213 (214)
6 PRK04203 rpl1P 50S ribosomal p 99.8 1.1E-18 2.5E-23 126.0 7.6 59 1-66 156-214 (215)
7 PTZ00029 60S ribosomal protein 99.7 4.8E-18 1E-22 123.0 7.1 57 1-65 158-215 (216)
8 cd00403 Ribosomal_L1 Ribosomal 99.6 1.7E-15 3.7E-20 107.0 7.4 58 2-65 151-208 (208)
9 KOG1569 50S ribosomal protein 99.5 4.1E-14 9E-19 107.8 6.6 64 2-71 246-309 (323)
10 PF00687 Ribosomal_L1: Ribosom 99.4 5.1E-13 1.1E-17 94.8 6.7 54 2-62 166-220 (220)
11 KOG1570 60S ribosomal protein 97.7 7.1E-05 1.5E-09 55.1 4.5 52 7-65 166-217 (218)
12 KOG1685 Uncharacterized conser 97.5 0.0001 2.2E-09 57.4 3.4 54 5-65 205-258 (343)
13 COG4844 Uncharacterized protei 72.3 3.5 7.6E-05 25.9 2.1 16 16-31 59-74 (78)
14 PF00281 Ribosomal_L5: Ribosom 69.7 9.6 0.00021 22.2 3.5 31 6-38 12-42 (56)
15 PF00370 FGGY_N: FGGY family o 63.7 14 0.00031 26.0 4.1 49 12-67 39-87 (245)
16 PF14331 ImcF-related_N: ImcF- 61.9 27 0.00059 25.7 5.4 43 19-67 158-200 (266)
17 cd04506 SGNH_hydrolase_YpmR_li 55.3 61 0.0013 21.7 6.4 20 18-37 101-120 (204)
18 TIGR01234 L-ribulokinase L-rib 49.9 41 0.00089 26.9 5.0 49 11-66 51-99 (536)
19 PRK13669 hypothetical protein; 42.7 26 0.00056 22.1 2.3 16 16-31 59-74 (78)
20 cd01833 XynB_like SGNH_hydrola 42.5 67 0.0014 20.5 4.4 33 6-38 43-79 (157)
21 cd01841 NnaC_like NnaC (CMP-Ne 38.2 51 0.0011 21.4 3.3 23 16-38 68-90 (174)
22 cd01820 PAF_acetylesterase_lik 37.9 54 0.0012 22.5 3.6 23 16-38 106-128 (214)
23 PF03786 UxuA: D-mannonate deh 37.4 37 0.00079 26.8 2.9 19 15-33 174-192 (351)
24 PRK10331 L-fuculokinase; Provi 37.2 1.1E+02 0.0024 23.9 5.6 47 12-67 43-89 (470)
25 cd04502 SGNH_hydrolase_like_7 36.6 1.1E+02 0.0024 19.9 4.8 33 6-38 53-89 (171)
26 PF07736 CM_1: Chorismate muta 36.0 1.4E+02 0.003 20.2 5.9 46 7-59 4-49 (118)
27 KOG0975 Branched chain aminotr 35.2 51 0.0011 26.5 3.4 39 15-57 133-171 (379)
28 PF14606 Lipase_GDSL_3: GDSL-l 35.2 31 0.00068 24.6 2.0 23 16-38 71-93 (178)
29 COG4443 Uncharacterized protei 34.3 38 0.00083 21.1 2.0 24 56-79 48-71 (72)
30 cd01831 Endoglucanase_E_like E 34.1 1.1E+02 0.0024 20.0 4.5 23 16-38 74-96 (169)
31 COG1070 XylB Sugar (pentulose 33.3 1.2E+02 0.0027 24.1 5.3 49 12-67 44-92 (502)
32 PRK02628 nadE NAD synthetase; 32.4 45 0.00098 27.9 2.8 35 3-37 9-43 (679)
33 cd01825 SGNH_hydrolase_peri1 S 31.4 96 0.0021 20.2 3.8 22 16-37 74-95 (189)
34 PF12579 DUF3755: Protein of u 31.3 60 0.0013 17.4 2.3 14 20-33 14-27 (35)
35 PRK08861 cystathionine gamma-s 31.1 94 0.002 24.1 4.2 29 4-34 358-386 (388)
36 PF08885 GSCFA: GSCFA family; 29.8 77 0.0017 23.6 3.4 24 15-38 144-167 (251)
37 cd01836 FeeA_FeeB_like SGNH_hy 29.5 1.7E+02 0.0036 19.2 5.1 33 5-37 69-105 (191)
38 PTZ00294 glycerol kinase-like 29.5 1.6E+02 0.0035 23.3 5.4 51 12-67 41-91 (504)
39 cd01839 SGNH_arylesterase_like 29.1 92 0.002 21.0 3.5 23 15-37 97-119 (208)
40 TIGR01314 gntK_FGGY gluconate 28.6 1.7E+02 0.0037 23.1 5.4 48 12-67 39-86 (505)
41 PRK09767 hypothetical protein; 28.5 47 0.001 22.0 1.9 23 14-36 88-110 (117)
42 PF04480 DUF559: Protein of un 27.9 47 0.001 21.2 1.8 22 14-35 85-106 (108)
43 PRK08045 cystathionine gamma-s 27.4 1.1E+02 0.0024 23.6 4.0 29 4-34 357-385 (386)
44 cd01828 sialate_O-acetylestera 26.9 1.8E+02 0.0039 18.7 5.1 33 5-37 50-86 (169)
45 PRK15027 xylulokinase; Provisi 26.6 2.2E+02 0.0048 22.3 5.7 47 12-67 39-85 (484)
46 TIGR01552 phd_fam prevent-host 26.5 1.1E+02 0.0024 16.4 3.0 22 16-37 2-23 (52)
47 TIGR02628 fuculo_kin_coli L-fu 26.3 1.8E+02 0.0039 22.8 5.1 47 12-67 42-88 (465)
48 COG0289 DapB Dihydrodipicolina 26.3 72 0.0016 24.4 2.8 48 7-74 94-141 (266)
49 PRK08064 cystathionine beta-ly 26.3 1.3E+02 0.0028 23.0 4.2 27 4-32 357-383 (390)
50 PRK10939 autoinducer-2 (AI-2) 25.2 2.2E+02 0.0047 22.7 5.4 49 12-67 44-92 (520)
51 PF08434 CLCA_N: Calcium-activ 25.1 97 0.0021 23.5 3.3 46 6-56 33-79 (262)
52 KOG1492 C3H1-type Zn-finger pr 25.0 84 0.0018 24.2 2.9 20 16-35 1-20 (377)
53 PF02833 DHHA2: DHHA2 domain; 24.8 79 0.0017 20.0 2.4 32 5-36 30-62 (127)
54 PRK13728 conjugal transfer pro 24.8 1.2E+02 0.0027 21.5 3.6 29 1-31 143-173 (181)
55 PF12982 DUF3866: Protein of u 24.7 49 0.0011 26.0 1.6 20 56-75 298-317 (320)
56 PF02999 Borrelia_orfD: Borrel 24.6 1.1E+02 0.0023 20.2 3.0 23 16-38 62-84 (97)
57 PF07293 DUF1450: Protein of u 24.6 72 0.0016 19.9 2.1 15 17-31 60-74 (78)
58 cd01834 SGNH_hydrolase_like_2 24.3 1.1E+02 0.0024 19.7 3.1 22 16-37 82-103 (191)
59 PRK04123 ribulokinase; Provisi 23.9 2E+02 0.0043 23.0 5.0 49 12-67 49-97 (548)
60 PRK06460 hypothetical protein; 23.8 1.3E+02 0.0029 22.8 3.9 27 4-32 349-375 (376)
61 cd01844 SGNH_hydrolase_like_6 23.7 2.2E+02 0.0047 18.7 4.5 33 6-38 60-93 (177)
62 PRK08776 cystathionine gamma-s 23.1 1.1E+02 0.0024 23.7 3.4 32 4-37 365-396 (405)
63 cd01838 Isoamyl_acetate_hydrol 23.1 1.5E+02 0.0033 19.2 3.6 22 16-37 85-106 (199)
64 PLN02295 glycerol kinase 23.0 2.4E+02 0.0051 22.5 5.2 52 12-66 39-90 (512)
65 TIGR01906 integ_TIGR01906 inte 23.0 90 0.002 22.4 2.7 24 12-35 42-65 (207)
66 PF02084 Bindin: Bindin; Inte 22.9 51 0.0011 24.9 1.4 24 19-42 103-126 (238)
67 cd02185 AroH Chorismate mutase 22.7 1.9E+02 0.004 19.6 4.0 39 14-59 11-49 (117)
68 TIGR01311 glycerol_kin glycero 22.7 2.1E+02 0.0045 22.6 4.8 49 12-67 40-88 (493)
69 PF06816 NOD: NOTCH protein; 22.4 86 0.0019 18.4 2.0 23 14-36 13-35 (57)
70 PRK00010 rplE 50S ribosomal pr 22.3 73 0.0016 22.7 2.0 58 6-68 35-92 (179)
71 PRK00047 glpK glycerol kinase; 22.0 2.1E+02 0.0045 22.6 4.7 48 12-66 44-91 (498)
72 PF03748 FliL: Flagellar basal 21.9 1.5E+02 0.0033 17.7 3.3 9 49-57 87-95 (99)
73 TIGR00695 uxuA mannonate dehyd 21.9 98 0.0021 24.8 2.9 20 15-34 202-221 (394)
74 PRK08134 O-acetylhomoserine am 21.6 1.7E+02 0.0037 23.1 4.1 29 4-34 402-430 (433)
75 PRK07812 O-acetylhomoserine am 21.6 1.5E+02 0.0033 23.4 3.9 29 4-34 406-434 (436)
76 COG2852 Very-short-patch-repai 21.5 92 0.002 21.5 2.3 24 14-37 98-121 (129)
77 TIGR03260 met_CoM_red_D methyl 21.5 78 0.0017 22.3 2.0 27 7-33 69-97 (150)
78 PF11517 Nab2: Nuclear abundan 21.4 1.1E+02 0.0024 20.4 2.6 21 18-38 5-25 (107)
79 PRK10528 multifunctional acyl- 21.4 1.5E+02 0.0033 20.0 3.5 21 15-35 87-107 (191)
80 PF07314 DUF1461: Protein of u 21.3 1E+02 0.0022 21.5 2.6 25 13-37 44-68 (181)
81 PF01472 PUA: PUA domain; Int 21.1 80 0.0017 18.6 1.8 16 8-23 46-61 (74)
82 PRK06767 methionine gamma-lyas 21.1 1.3E+02 0.0027 23.0 3.3 27 4-32 360-386 (386)
83 TIGR01312 XylB D-xylulose kina 21.1 3.1E+02 0.0067 21.2 5.4 45 12-64 37-81 (481)
84 TIGR01796 CM_mono_aroH monofun 20.8 2.1E+02 0.0046 19.3 4.0 39 14-59 11-49 (117)
85 TIGR01315 5C_CHO_kinase FGGY-f 20.4 2.2E+02 0.0049 22.8 4.7 41 12-59 39-79 (541)
86 PLN02399 phospholipid hydroper 20.1 1.3E+02 0.0027 22.2 3.0 28 1-30 207-235 (236)
87 PF07318 DUF1464: Protein of u 20.1 1.6E+02 0.0034 23.3 3.6 25 11-35 21-45 (343)
No 1
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.8e-23 Score=152.40 Aligned_cols=62 Identities=44% Similarity=0.716 Sum_probs=60.3
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
+|+.|+||++||++||++|+|.||+.+++++|.+++|+++||+ ||+++||||||||||+|++
T Consensus 166 ~dk~g~ih~~iGk~sf~~e~L~eNi~a~l~~i~~~~p~~~kg~-----~ik~v~vstTMGP~v~v~~ 227 (228)
T COG0081 166 ADKAGVIHVPIGKVSFDDEKLAENIEALLNAIVKAKPAGAKGQ-----YIKSVYVSTTMGPGVKVDL 227 (228)
T ss_pred ECCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHhCcCCcccc-----eEeEEEEecCCCCCEEecc
Confidence 5899999999999999999999999999999999999999999 9999999999999999985
No 2
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=99.88 E-value=7.9e-23 Score=149.55 Aligned_cols=65 Identities=43% Similarity=0.655 Sum_probs=62.4
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSL 70 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~ 70 (82)
+|+.|+||++||+++|++|||+||+.+++++|.+.+|++.||. ||+++||||||||||+||+.++
T Consensus 164 ~dk~g~i~~~VG~~~m~~~~l~eNi~a~l~~i~~~~p~~~kg~-----~ik~v~issTMGp~v~i~~~~~ 228 (229)
T CHL00129 164 ADKTGIVHVLFGKSNFTEEDLLENLQAIYESIEQNRPSGVKGK-----YWKSFYICSTMGPSIQIDISLL 228 (229)
T ss_pred ecCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCc-----eEEEEEEECCCCCCEEeccccc
Confidence 4899999999999999999999999999999999999999998 9999999999999999998765
No 3
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=99.87 E-value=5.2e-22 Score=145.04 Aligned_cols=65 Identities=43% Similarity=0.646 Sum_probs=62.7
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSL 70 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~ 70 (82)
+|+.|+||++||+++|++|||.||+.+++++|.+.+|.+.||+ ||+++|||||||||++||+.++
T Consensus 164 ~~k~g~i~~~IG~~~m~~e~i~eNi~a~l~~i~~~~p~~~kg~-----~Ik~v~lssTmGp~~~i~~~~~ 228 (230)
T PRK05424 164 VDKAGIIHAPIGKVSFDAEKLKENLKALIDAIKKAKPATAKGT-----YIKSVSLSSTMGPGVKVDPSSL 228 (230)
T ss_pred ecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccCCC-----EEEEEEEECCCCCCEEechHHh
Confidence 4899999999999999999999999999999999999999998 9999999999999999999876
No 4
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=99.86 E-value=5e-22 Score=144.92 Aligned_cols=64 Identities=41% Similarity=0.712 Sum_probs=61.4
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhh
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS 69 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~ 69 (82)
+|+.|+||++||+++|++|||.||+.+++++|.+.+|.+.||+ ||+++|||||||||++||+.+
T Consensus 163 ~~k~g~i~~~VG~~~m~~e~i~eNi~a~l~~i~~~~p~~~kg~-----~Ik~v~lssTmGp~~~i~~~~ 226 (227)
T TIGR01169 163 ADKAGNIHASIGKVSFDSEKLKENLEALLDAIKKAKPSGAKGQ-----YIKNIALSSTMGPGIKVDLSS 226 (227)
T ss_pred eCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCccccCCC-----EEEEEEEECCCCCCEEeccCC
Confidence 4899999999999999999999999999999999999999998 999999999999999999864
No 5
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=99.78 E-value=3.2e-19 Score=129.39 Aligned_cols=58 Identities=26% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEe
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
+|+.|++|++||+++|++|||+||+.|+++.|.+.+|. +++ ||+++||||||||+++|
T Consensus 156 ~~k~~~~~~~VGk~~m~~e~i~eNi~a~l~~l~~~~p~--k~~-----nIksv~iktTMGp~~~~ 213 (214)
T PTZ00225 156 LKKVLCLGTCVGHVEMTEEQLRQNVVMAINFLVSLLKK--NWQ-----NLKSAYIKSTMGKPQRI 213 (214)
T ss_pred ecCccEEEeEEccCCCCHHHHHHHHHHHHHHHHHhCCc--CCc-----eEeEEEEECCCCCCEeC
Confidence 48999999999999999999999999999999999995 776 99999999999999985
No 6
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=99.77 E-value=1.1e-18 Score=126.03 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=54.7
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
+|+.|++|++||+++|++|||+||+.+++++|.+.+|.+.+ ||+++|||||||||++|-
T Consensus 156 ~~k~~~i~v~VG~~~m~~e~l~eNi~avl~~i~~~~p~g~~-------~Iksi~lktTmgp~i~i~ 214 (215)
T PRK04203 156 TKDQPTFHVRVGTEDMSPEELAENIDAVLNRIESKLEKGRQ-------NIKSVYVKTTMGPAVKVE 214 (215)
T ss_pred eCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccc-------cEEEEEEECCCCCCEEee
Confidence 37889999999999999999999999999999999997643 999999999999999984
No 7
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=99.74 E-value=4.8e-18 Score=123.04 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=52.7
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCC-CcccccccceEEEecCCCCceEe
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKK-TSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg-~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
+|+.|++|++||+++|++|||+||+.+++++|.+.+| || . ||+++||+||||||++|
T Consensus 158 ~~k~~~i~v~VG~~~~~~e~l~eNi~avl~~i~~~~~---kg~~-----~Iksv~lktTmgp~v~v 215 (216)
T PTZ00029 158 LKKVLCLGVAVGNVEMTEEQLRQNIVLSINFLVSLLK---KNWQ-----NIKTLHIKSTMGKPQRI 215 (216)
T ss_pred ECCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc---cccc-----cEeEEEEECCCCCCEeC
Confidence 4789999999999999999999999999999999886 44 3 99999999999999986
No 8
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=99.61 E-value=1.7e-15 Score=107.00 Aligned_cols=58 Identities=41% Similarity=0.631 Sum_probs=53.0
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEe
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
+++|+++++||+++|++|||+||+.+++++|....|. .++. +|+++||+||||||+.|
T Consensus 151 ~~~~~~~v~VG~~~m~~~~l~eNi~~vi~~i~~~~~~-~~~~-----~i~~v~lktt~~~~lpI 208 (208)
T cd00403 151 DKGGCIHVPVGKVSMSPEQLVENIEAVINALVKKLPS-KKGQ-----NIKSIYLKTTMGPSLPI 208 (208)
T ss_pred CCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCc-ccCe-----EEEEEEEECCCCCCeEC
Confidence 5788999999999999999999999999999999995 3334 99999999999999975
No 9
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.1e-14 Score=107.83 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=60.1
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHH
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 71 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~ 71 (82)
++.+++|++||+++|++|||.+||.+++.++...+|. .+|. ||.++.|+||||||+.||+..+.
T Consensus 246 ~~~~~~~~~vGkl~mt~e~i~~Ni~a~i~av~t~rp~-~~G~-----fv~ra~L~Ss~g~~i~l~i~p~i 309 (323)
T KOG1569|consen 246 ERENILQIKVGKLDMTSEQILANIQAVIAAVCTHRPK-ALGP-----FVVRALLRSSPGEGILLKIDPLI 309 (323)
T ss_pred ccCceeeeeeeeecCCHHHHHHHHHHHHHHHHhcCCc-ccCc-----eeeeeEeecCCCCceeEeccccc
Confidence 5778999999999999999999999999999999998 7998 99999999999999999987663
No 10
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=99.41 E-value=5.1e-13 Score=94.78 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=48.4
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhh-CCCCCCCCcccccccceEEEecCCCCc
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLA-KPAGLKKTSKFAGYVNSFHMCSTMGPS 62 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~-kp~~~Kg~~~~~~~I~~v~lsSTMGPg 62 (82)
++.++++++||+++|+++||.||+.+++++|.+. .|. |. .+|+++||+||||||
T Consensus 166 ~~~~~~~v~VG~~~~~~~~i~eNi~~~i~~i~~~~~~~---g~----~~I~~i~ikst~s~~ 220 (220)
T PF00687_consen 166 GKGGCISVKVGHLSMTDEQIVENIKAVIKAIVSKPLPK---GW----KNIKSIYIKSTMSPS 220 (220)
T ss_dssp BTSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTTTSS---SS----GSEEEEEEEESSSEE
T ss_pred ccCCeeecCccCCCCCHHHHHHHHHHHHHHHHHhhhcc---Cc----ceEEEEEEECCCCCC
Confidence 4789999999999999999999999999999999 443 33 289999999999997
No 11
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=7.1e-05 Score=55.11 Aligned_cols=52 Identities=27% Similarity=0.306 Sum_probs=43.3
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEe
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
..++||-+.|++|+|.+||.--++.+.......-+ .++..++.|||||+.++
T Consensus 166 GavaVGhv~M~d~el~~nI~l~vnFlVSlLKknwQ-------Nvral~iKst~g~p~~l 217 (218)
T KOG1570|consen 166 LAVAVGHVGMTDEELVYNIHLAVNFLVSLLKKNWQ-------NVRALYIKSTMGKPQRL 217 (218)
T ss_pred eeeeecCCCCCHHHHHHhhhhhhhhHHHHHhhccc-------chhheeeccCCCCceec
Confidence 67899999999999999998887777765433233 79999999999999875
No 12
>KOG1685 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0001 Score=57.40 Aligned_cols=54 Identities=28% Similarity=0.469 Sum_probs=48.8
Q ss_pred ceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEe
Q 034832 5 SNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 5 G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
-.+-+.+|.++++.++|.||+.++++.|....|.+.+ +|+++||.+.-+|++.|
T Consensus 205 ~~~~i~vg~l~~~~~~l~ENv~~vlk~l~e~~P~~~~-------~Irsl~lKt~~s~aLPl 258 (343)
T KOG1685|consen 205 TSSAIKVGHLGNTSEELAENVVAVLKGLSEILPGGWK-------NIRSLHLKTSRSPALPL 258 (343)
T ss_pred ceeEEEeccccccHHHHHHHHHHHHHHHHHHccchHh-------HhHHHhhhccCCcccce
Confidence 3566789999999999999999999999988897666 89999999999999877
No 13
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.31 E-value=3.5 Score=25.92 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHH
Q 034832 16 LKEELLRENVGAFVNA 31 (82)
Q Consensus 16 F~~e~L~eNi~avl~a 31 (82)
=++|||+|||-++++.
T Consensus 59 et~eeLv~NIY~~i~E 74 (78)
T COG4844 59 ETPEELVENIYTFIEE 74 (78)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4799999999999874
No 14
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=69.68 E-value=9.6 Score=22.17 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.5
Q ss_pred eeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCC
Q 034832 6 NVHVGLGKVSLKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 6 ~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~ 38 (82)
+|++.+|...-+ +.+++....|+.|-..+|.
T Consensus 12 vin~gvg~~~~~--k~l~~a~~~L~~ItGQkp~ 42 (56)
T PF00281_consen 12 VINIGVGEAGDD--KVLEKAKKELEQITGQKPV 42 (56)
T ss_dssp EEEEESSTTSST--HHHHHHHHHHHHHHSS--E
T ss_pred EEECCCCccccc--hHHHHHHHHHHHHhCCcee
Confidence 588999988877 8889999999999998885
No 15
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=63.71 E-value=14 Score=26.00 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=36.1
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|...++++++.+-+..++..+.+..+. ... .|..|.+|++|.--+-+|-
T Consensus 39 g~~e~d~~~~~~~~~~~~~~~~~~~~~--~~~-----~I~aI~is~~~~~~v~~D~ 87 (245)
T PF00370_consen 39 GWAEQDPDEIWEAICEALKELLSQAGI--DPE-----QIKAIGISGQGHGLVLLDK 87 (245)
T ss_dssp TEEEE-HHHHHHHHHHHHHHHHHHCTS--CGG-----GEEEEEEEE-SSEEEEEET
T ss_pred cccccChHHHHHHHHHHHHHHHhhcCc--ccc-----eeEEEEeccccCCcceecc
Confidence 455689999999999999999987632 222 7999999888865566665
No 16
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=61.90 E-value=27 Score=25.71 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 19 ELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 19 e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
+.|.+++..+++.+...-+-... . +++.+|++|+.-.|..+|.
T Consensus 158 ~~L~~~L~~fl~~~f~~~~~~~~-~-----~lRGvYftS~~q~g~~~d~ 200 (266)
T PF14331_consen 158 AALRPPLREFLEELFRPNPYQEP-P-----LLRGVYFTSATQEGTPIDR 200 (266)
T ss_pred HHHHHHHHHHHHHHhccCCCCCC-C-----eeeeeeeecCccccccccH
Confidence 46889999999999876553322 2 8999999999999999886
No 17
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=55.33 E-value=61 Score=21.72 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 034832 18 EELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 18 ~e~L~eNi~avl~aI~~~kp 37 (82)
.++..+|+.++++.+++..|
T Consensus 101 ~~~~~~~l~~~i~~ir~~~p 120 (204)
T cd04506 101 EETYQNNLKKIFKEIRKLNP 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 46788999999999997665
No 18
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=49.94 E-value=41 Score=26.90 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=36.9
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 11 LGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 11 IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
-|...++++++.+++...+..+.+.-+. ... -|+.|.+|++|.=-+-+|
T Consensus 51 ~g~~Eqdp~~~w~~~~~~~~~~~~~~~~--~~~-----~I~aI~~s~q~~s~v~~D 99 (536)
T TIGR01234 51 NDQALQHPADYIEVLEAAIPTVLAELGV--DPA-----DVVGIGVDFTACTPAPID 99 (536)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHcCC--CHH-----HEEEEEEecCcceeEEEC
Confidence 4678889999999999999888866432 222 499999999976555555
No 19
>PRK13669 hypothetical protein; Provisional
Probab=42.67 E-value=26 Score=22.13 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHH
Q 034832 16 LKEELLRENVGAFVNA 31 (82)
Q Consensus 16 F~~e~L~eNi~avl~a 31 (82)
=++|||++||...++.
T Consensus 59 ~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 59 ETPEELVENIYAHLEE 74 (78)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 3789999999988875
No 20
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.45 E-value=67 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=24.6
Q ss_pred eeeeeeecCC----CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 6 NVHVGLGKVS----LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 6 ~Ih~~IGk~s----F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
.|-+.+|.=+ ++.++..+|+..+++.+++..|.
T Consensus 43 ~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~ 79 (157)
T cd01833 43 VVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPD 79 (157)
T ss_pred EEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455433 47899999999999999987663
No 21
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=38.17 E-value=51 Score=21.44 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 16 LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
.+.++..+|+.++++.+++..|.
T Consensus 68 ~~~~~~~~~~~~l~~~~~~~~p~ 90 (174)
T cd01841 68 VSSNQFIKWYRDIIEQIREEFPN 90 (174)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999987653
No 22
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=37.91 E-value=54 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 16 LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
++.+++.+|+..+++.+++..|.
T Consensus 106 ~~~~~~~~~l~~ii~~l~~~~P~ 128 (214)
T cd01820 106 TTAEEIAEGILAIVEEIREKLPN 128 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC
Confidence 37999999999999999987663
No 23
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=37.42 E-value=37 Score=26.84 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 034832 15 SLKEELLRENVGAFVNALL 33 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~ 33 (82)
.++.|+|.+|+.-||++|.
T Consensus 174 ~i~~e~lw~nl~yFL~~v~ 192 (351)
T PF03786_consen 174 GIDEEQLWENLKYFLEAVI 192 (351)
T ss_dssp T--HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 5679999999999999997
No 24
>PRK10331 L-fuculokinase; Provisional
Probab=37.17 E-value=1.1e+02 Score=23.90 Aligned_cols=47 Identities=2% Similarity=-0.108 Sum_probs=34.7
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|-..++++++.+++...+..+.+.. +.. .|..|.+|+.|.=.+-+|-
T Consensus 43 g~~eqd~~~~w~~~~~~~~~~~~~~----~~~-----~I~~I~is~~~~~~v~~D~ 89 (470)
T PRK10331 43 DWHQWSLDAILQRFADCCRQINSEL----TEC-----HIRGITVTTFGVDGALVDK 89 (470)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHhC----Ccc-----ceEEEEEeccccceEEECC
Confidence 5567889999999988888886542 112 4999999998766666664
No 25
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=36.64 E-value=1.1e+02 Score=19.85 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.3
Q ss_pred eeeeeeecCC----CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 6 NVHVGLGKVS----LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 6 ~Ih~~IGk~s----F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
.|-+.+|.=+ .+.++..+|+.++++.+++..|.
T Consensus 53 ~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~ 89 (171)
T cd04502 53 RVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPD 89 (171)
T ss_pred EEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4555566533 47999999999999999987653
No 26
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=36.03 E-value=1.4e+02 Score=20.20 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=32.3
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCC
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTM 59 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTM 59 (82)
|+-++.-..=+.|+|.+....++.+|.+.-. ..-. -|-++.+|.|-
T Consensus 4 IRGA~tv~~n~~e~I~~at~eLl~~i~~~N~--l~~~-----dIvSi~FT~T~ 49 (118)
T PF07736_consen 4 IRGATTVEENTPEEILEATRELLEEILERNE--LSPE-----DIVSIIFTVTP 49 (118)
T ss_dssp EEEEEE-SSSSHHHHHHHHHHHHHHHHHHTT----GG-----GEEEEEEEE-T
T ss_pred eeCcEecCCCCHHHHHHHHHHHHHHHHHHcC--CCHH-----HEEEEEEEeCC
Confidence 3445555667899999999999999997632 2222 69999998874
No 27
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=35.21 E-value=51 Score=26.47 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEec
Q 034832 15 SLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCS 57 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsS 57 (82)
+|+++|+.|+++.+..+=++-.|...+|+- ||+-+.+-|
T Consensus 133 ~p~~~e~ie~i~~lv~~~~~wVP~~~~~SL----yirp~l~Gt 171 (379)
T KOG0975|consen 133 SPDVEEFIEAIKQLVLADKEWVPPPGKGSL----YIRPLLIGT 171 (379)
T ss_pred CCCHHHHHHHHHHHHHhcCcccCCCCCceE----EEeeeeccC
Confidence 689999999999888775555787667653 666655544
No 28
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=35.18 E-value=31 Score=24.57 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 16 LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
|+++++.+++..|++.|++.-|.
T Consensus 71 ~~~~~~~~~~~~fv~~iR~~hP~ 93 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTIREAHPD 93 (178)
T ss_dssp CCTTTHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999885
No 29
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.27 E-value=38 Score=21.07 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.4
Q ss_pred ecCCCCceEeehhhHHHHHhhhhh
Q 034832 56 CSTMGPSFPVSIQSLSRALDQYNK 79 (82)
Q Consensus 56 sSTMGPgi~id~~~~~~~~~~~~~ 79 (82)
.|-||.||.+.-.++..+.+..|.
T Consensus 48 h~KMGKGiTLt~eE~~~l~d~l~~ 71 (72)
T COG4443 48 HSKMGKGITLTNEEFKALKDLLNS 71 (72)
T ss_pred hhhhcCceeecHHHHHHHHHHHhc
Confidence 467999999999888877776653
No 30
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=34.12 E-value=1.1e+02 Score=19.97 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 16 LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
.+.+++.+|+..+++.+++..|.
T Consensus 74 ~~~~~~~~~~~~li~~i~~~~p~ 96 (169)
T cd01831 74 PPGEDFTNAYVEFIEELRKRYPD 96 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999987764
No 31
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=33.34 E-value=1.2e+02 Score=24.11 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=30.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|-..|+++++.+-+...+..+.+..+- ... .|.-|.+|+-|.=.+-||-
T Consensus 44 g~~e~d~~~~w~~~~~ai~~l~~~~~~--~~~-----~I~aI~is~~~~g~vllD~ 92 (502)
T COG1070 44 GWAEQDPDELWQAILEALRQLLEESKI--DPD-----AIAAIGISGQGHGLVLLDA 92 (502)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHhccc--Chh-----hceEEEEeccccceEEECC
Confidence 344567777766666666666655431 222 5888889877755566665
No 32
>PRK02628 nadE NAD synthetase; Reviewed
Probab=32.43 E-value=45 Score=27.93 Aligned_cols=35 Identities=11% Similarity=-0.040 Sum_probs=30.9
Q ss_pred CcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCC
Q 034832 3 NTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 3 k~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp 37 (82)
++|.+.+++.+.+....++.+|+..+++.|.++..
T Consensus 9 ~~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~ 43 (679)
T PRK02628 9 RHGFVRVAAATPKVRVADPAFNAARILALARRAAD 43 (679)
T ss_pred hCCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999889999999999999997753
No 33
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.45 E-value=96 Score=20.16 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhCC
Q 034832 16 LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp 37 (82)
++.++..+|+.++++.+++..|
T Consensus 74 ~~~~~~~~~~~~li~~i~~~~~ 95 (189)
T cd01825 74 LNASEYRQQLREFIKRLRQILP 95 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC
Confidence 6789999999999999998644
No 34
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=31.26 E-value=60 Score=17.39 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 034832 20 LLRENVGAFVNALL 33 (82)
Q Consensus 20 ~L~eNi~avl~aI~ 33 (82)
+..+||.++++.+.
T Consensus 14 ~~R~NI~~il~~m~ 27 (35)
T PF12579_consen 14 QTRDNILAILNDMN 27 (35)
T ss_pred HHHHHHHHHHHHHH
Confidence 56789999998876
No 35
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=31.10 E-value=94 Score=24.11 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=25.4
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHHHh
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~ 34 (82)
.|.|++.||=+ +.|+|.+=+...++++.+
T Consensus 358 ~~liRlsvGlE--~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 358 QQLLRLSVGLE--DAQDLIADLDQAFAKAAE 386 (388)
T ss_pred CCeEEEEeCcC--CHHHHHHHHHHHHHHHHh
Confidence 47899999999 489999999999988765
No 36
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=29.83 E-value=77 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCCC
Q 034832 15 SLKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~~kp~ 38 (82)
+++.+|+.+++.++++.|++..|.
T Consensus 144 ~ls~~ei~~~l~~~~~~l~~~nP~ 167 (251)
T PF08885_consen 144 NLSVEEILEDLEAIIDLLRSINPD 167 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCC
Confidence 489999999999999999999884
No 37
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.54 E-value=1.7e+02 Score=19.24 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=24.4
Q ss_pred ceeeeeeecCC----CCHHHHHHHHHHHHHHHHhhCC
Q 034832 5 SNVHVGLGKVS----LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 5 G~Ih~~IGk~s----F~~e~L~eNi~avl~aI~~~kp 37 (82)
..|-+.+|.=+ .+.+++.+|+..+++.+++..|
T Consensus 69 d~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~ 105 (191)
T cd01836 69 DVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFP 105 (191)
T ss_pred CEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 44555555533 3589999999999999997654
No 38
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=29.45 E-value=1.6e+02 Score=23.26 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=35.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|...++++++.+++...+..+.+..+. ++.+ ..|..|.+|+.|.=-+-+|-
T Consensus 41 g~~eqd~~~~~~~~~~~l~~~~~~~~~--~~~~---~~I~aIgis~q~~~~v~~D~ 91 (504)
T PTZ00294 41 GWLEHDPEEILRNVYKCMNEAIKKLRE--KGPS---FKIKAIGITNQRETVVAWDK 91 (504)
T ss_pred CeEeeCHHHHHHHHHHHHHHHHHHcCC--CCcc---CceEEEEeecCcceEEEEEC
Confidence 566788999999998888888755432 1100 03999999998766677753
No 39
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.15 E-value=92 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCC
Q 034832 15 SLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~~kp 37 (82)
+++.+++.+|+.++++.+++..+
T Consensus 97 ~~~~~~~~~~l~~lv~~i~~~~~ 119 (208)
T cd01839 97 NLSAAEIAQGLGALVDIIRTAPI 119 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHhccc
Confidence 35899999999999999998653
No 40
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=28.62 E-value=1.7e+02 Score=23.11 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=35.0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|....+++++.+++...++.+.+..+.. . -|..|-+|++|.=-+-+|-
T Consensus 39 g~~e~d~~~~~~~~~~~i~~~~~~~~~~--~------~I~~Igis~~~~~~v~~D~ 86 (505)
T TIGR01314 39 GMAEENPEEIFEAVLVTIREVSINLEDE--D------EILFVSFSTQMHSLIAFDE 86 (505)
T ss_pred CCeeeCHHHHHHHHHHHHHHHHHhCCCc--C------ceEEEEEecccceeEEECC
Confidence 5566789999999888888887643322 2 5999999998755566654
No 41
>PRK09767 hypothetical protein; Provisional
Probab=28.47 E-value=47 Score=22.03 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhC
Q 034832 14 VSLKEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~k 36 (82)
+-|+.+++.+|+.++++.|....
T Consensus 88 lRf~n~dV~~~~~~Vl~~I~~~l 110 (117)
T PRK09767 88 LRFWNNEIDCNEEAVLEIILQEL 110 (117)
T ss_pred EEEEHHHHHhCHHHHHHHHHHHH
Confidence 45889999999999999998764
No 42
>PF04480 DUF559: Protein of unknown function (DUF559); InterPro: IPR007569 This entry represents a protein of unknown function, but is thought to be a DNA mismatch repair endonuclease. ; PDB: 3R3P_B 3HRL_A.
Probab=27.94 E-value=47 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 034832 14 VSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~ 35 (82)
+-|+.++|.+|...+++.|.+.
T Consensus 85 lR~~~~~v~~~~~~vv~~I~~~ 106 (108)
T PF04480_consen 85 LRFTAEDVREDPEAVVEQIRAA 106 (108)
T ss_dssp EEEEHHHHHHGHHHHHHHHHHH
T ss_pred EEeeHHHHHhCHHHHHHHHHHH
Confidence 4588999999999999999864
No 43
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=27.37 E-value=1.1e+02 Score=23.57 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=24.4
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHHHh
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~ 34 (82)
.|.|++.||=++ +|+|.+=+...|+.+.+
T Consensus 357 ~~liR~svGlE~--~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 357 ETLLRISTGIED--GEDLIADLENGFRAANK 385 (386)
T ss_pred CCeEEEEeCcCC--HHHHHHHHHHHHHHhhc
Confidence 478999999995 99999999888887653
No 44
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.90 E-value=1.8e+02 Score=18.73 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=24.7
Q ss_pred ceeeeeeecCC----CCHHHHHHHHHHHHHHHHhhCC
Q 034832 5 SNVHVGLGKVS----LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 5 G~Ih~~IGk~s----F~~e~L~eNi~avl~aI~~~kp 37 (82)
..|-+.+|.=+ +++++..+|+..+++.+++.-|
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~ 86 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFP 86 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34555555333 7899999999999999997643
No 45
>PRK15027 xylulokinase; Provisional
Probab=26.61 E-value=2.2e+02 Score=22.34 Aligned_cols=47 Identities=11% Similarity=-0.047 Sum_probs=35.5
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|...++++++.+.+..+++.+.+..+ .. -|..|.+|++|.=-+-+|-
T Consensus 39 g~~eqd~~~~w~~~~~~~~~l~~~~~----~~-----~I~aI~is~q~~~~v~~D~ 85 (484)
T PRK15027 39 LWSEQDPEQWWQATDRAMKALGDQHS----LQ-----DVKALGIAGQMHGATLLDA 85 (484)
T ss_pred CccccCHHHHHHHHHHHHHHHHHhCC----cc-----ceeEEEEecCCCceEEECC
Confidence 66778999999999999888876432 12 5999999998855555654
No 46
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=26.53 E-value=1.1e+02 Score=16.44 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhCC
Q 034832 16 LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp 37 (82)
.+..++..|+..+++.+....|
T Consensus 2 v~~te~r~~~~~~l~~v~~~~p 23 (52)
T TIGR01552 2 VSLSEAKNKLGELLKRVRDGEP 23 (52)
T ss_pred cCHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999974333
No 47
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=26.27 E-value=1.8e+02 Score=22.79 Aligned_cols=47 Identities=4% Similarity=-0.033 Sum_probs=33.4
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|-..++++++.+++...+..+.... ... .|+.|.+|+.|.-.+-+|-
T Consensus 42 g~~eqd~~~~w~~~~~~~~~l~~~~----~~~-----~I~aI~~s~~~~~~v~~D~ 88 (465)
T TIGR02628 42 DYHIWDLEAIWQKLADCCQQINSEL----TEK-----HIRGIAVTTFGVDGAPFDK 88 (465)
T ss_pred CceeeCHHHHHHHHHHHHHHHHhhc----Chh-----ceEEEEEeccccceEEECC
Confidence 5556789999998888888887431 111 5999999886655566665
No 48
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=26.27 E-value=72 Score=24.37 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=30.6
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHHHH
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRAL 74 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~~~ 74 (82)
+.+.||+..|++||+ +.+..+.+. . -+.+|+-|.-|+.|-.+-+..++
T Consensus 94 ~~lVIGTTGf~~e~~-~~l~~~a~~-----------v--------~vv~a~NfSiGvnll~~l~~~aa 141 (266)
T COG0289 94 KPLVIGTTGFTEEQL-EKLREAAEK-----------V--------PVVIAPNFSLGVNLLFKLAEQAA 141 (266)
T ss_pred CCeEEECCCCCHHHH-HHHHHHHhh-----------C--------CEEEeccchHHHHHHHHHHHHHH
Confidence 678899999999994 334333322 1 35677777777766554444433
No 49
>PRK08064 cystathionine beta-lyase; Provisional
Probab=26.26 E-value=1.3e+02 Score=23.05 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=23.0
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHH
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNAL 32 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI 32 (82)
.|.|++.||=+ +.|+|.+=+...++.+
T Consensus 357 ~~liR~SvGle--~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 357 DGLLRLSVGLE--NVDDLIADFEQALSYV 383 (390)
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHhc
Confidence 57899999998 5889999888888875
No 50
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=25.16 E-value=2.2e+02 Score=22.68 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=32.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|...++++++.+.+...+..+.++-+ ..+. .|..|.+|+.|.=-+-+|-
T Consensus 44 g~~Eqd~~~~w~~~~~~l~~~~~~~~--~~~~-----~I~aI~~s~~~~~~v~~D~ 92 (520)
T PRK10939 44 GSMEFDLEKNWQLACQCIRQALQKAG--IPAS-----DIAAVSATSMREGIVLYDR 92 (520)
T ss_pred CCeeECHHHHHHHHHHHHHHHHHHcC--CCcc-----ceEEEEEECCcccEEEECC
Confidence 56677899998888888877765432 2222 5889998877643344443
No 51
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=25.12 E-value=97 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=29.9
Q ss_pred eeeeeeecCCCCHHHHHHHHHHHHHHHHhhC-CCCCCCCcccccccceEEEe
Q 034832 6 NVHVGLGKVSLKEELLRENVGAFVNALLLAK-PAGLKKTSKFAGYVNSFHMC 56 (82)
Q Consensus 6 ~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~k-p~~~Kg~~~~~~~I~~v~ls 56 (82)
.|-++|..-==++++|++||+.++..--... -++.+.. |+++|.|-
T Consensus 33 ~vvIAI~p~VpEd~~lI~~Ik~m~t~AS~~Lf~AT~~R~-----yf~~V~IL 79 (262)
T PF08434_consen 33 DVVIAINPSVPEDEKLIDNIKDMFTEASQYLFNATKKRA-----YFKNVTIL 79 (262)
T ss_pred cEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHHhhCce-----eeeeeEEE
Confidence 4567777766677889999988876544321 2222333 88888763
No 52
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=25.01 E-value=84 Score=24.21 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 034832 16 LKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~ 35 (82)
|..+||+|||..+..+|..-
T Consensus 1 mneqqlleniaslagainqy 20 (377)
T KOG1492|consen 1 MNEQQLLENIASLAGAINQY 20 (377)
T ss_pred CcHHHHHHHHHHHHHHHHhh
Confidence 57899999999988888653
No 53
>PF02833 DHHA2: DHHA2 domain; InterPro: IPR004097 This domain is called DHHA2 since it is often associated with the DHH domain (IPR001667 from INTERPRO) and is diagnostic of DHH subfamily 2 members []. The domain is about 120 residues long and contains a conserved DXK motif at its amino terminus. It is present in inorganic pyrophosphatases and in exopolyphosphatase of Saccharomyces cerevisiae.; GO: 0016462 pyrophosphatase activity, 0005737 cytoplasm; PDB: 1WPP_A 1K20_A 1I74_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2ENX_A 2EB0_A ....
Probab=24.83 E-value=79 Score=20.05 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=25.1
Q ss_pred ceeeeeeecC-CCCHHHHHHHHHHHHHHHHhhC
Q 034832 5 SNVHVGLGKV-SLKEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 5 G~Ih~~IGk~-sF~~e~L~eNi~avl~aI~~~k 36 (82)
|-++++|+.+ .++.+++.+....+.+++.+-.
T Consensus 30 ~~~~vgis~v~~~~~~~~~~~~~~~~~~l~~~~ 62 (127)
T PF02833_consen 30 GGKKVGISQVETMDLEELLSRKDELLEELEEFC 62 (127)
T ss_dssp TTEEEEEEEEEES-HHHHHTTHHHHHHHHHHHH
T ss_pred CCeEEEEEeeeecCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999 9999999988777777776543
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=24.75 E-value=1.2e+02 Score=21.50 Aligned_cols=29 Identities=3% Similarity=0.014 Sum_probs=22.2
Q ss_pred CCCcceee--eeeecCCCCHHHHHHHHHHHHHH
Q 034832 1 MDNTSNVH--VGLGKVSLKEELLRENVGAFVNA 31 (82)
Q Consensus 1 ~Dk~G~Ih--~~IGk~sF~~e~L~eNi~avl~a 31 (82)
+|++|.+. +.+| .++.++|.+.+..++..
T Consensus 143 Id~~G~i~~~~~~G--~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 143 VNVNTLEALPLLQG--ATDAAGFMARMDTVLQM 173 (181)
T ss_pred EeCCCcEEEEEEEC--CCCHHHHHHHHHHHHhh
Confidence 48899885 5667 55688998888888765
No 55
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=24.71 E-value=49 Score=25.97 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.2
Q ss_pred ecCCCCceEeehhhHHHHHh
Q 034832 56 CSTMGPSFPVSIQSLSRALD 75 (82)
Q Consensus 56 sSTMGPgi~id~~~~~~~~~ 75 (82)
=||||.|+.=|...+..++.
T Consensus 298 lsTMGR~~~eDp~fFlaa~A 317 (320)
T PF12982_consen 298 LSTMGRGLDEDPAFFLAAAA 317 (320)
T ss_pred eecCCCCcccCHHHHHHHHH
Confidence 37999999999988866543
No 56
>PF02999 Borrelia_orfD: Borrelia orf-D family; InterPro: IPR004248 Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open reading frames called Orf-A, Orf-B, Orf-C and Orf-D. This entry represents the putative Orf-D protein, which has no known function [].
Probab=24.58 E-value=1.1e+02 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 16 LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
-+.++|.+||.-+.+.|.+.+|=
T Consensus 62 ~~~~~ik~nI~~~k~YI~ktkPI 84 (97)
T PF02999_consen 62 HSITSIKENIKYYKRYIKKTKPI 84 (97)
T ss_pred ccHHHHHHHHHHHHHHHHhcccH
Confidence 45678999999999999988883
No 57
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=24.57 E-value=72 Score=19.92 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHH
Q 034832 17 KEELLRENVGAFVNA 31 (82)
Q Consensus 17 ~~e~L~eNi~avl~a 31 (82)
++|+|+++|...++.
T Consensus 60 t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 60 TAEELLEKIKEKIEE 74 (78)
T ss_pred CHHHHHHHHHHHHhc
Confidence 789999999887753
No 58
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.32 E-value=1.1e+02 Score=19.72 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhCC
Q 034832 16 LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp 37 (82)
.+++++.+|+..+++.+++..|
T Consensus 82 ~~~~~~~~~l~~~v~~~~~~~~ 103 (191)
T cd01834 82 VGLEKFKTNLRRLIDRLKNKES 103 (191)
T ss_pred ccHHHHHHHHHHHHHHHHcccC
Confidence 4689999999999999985433
No 59
>PRK04123 ribulokinase; Provisional
Probab=23.92 E-value=2e+02 Score=23.04 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=33.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|....+++++.+.+...+..+.++... .+. -|..|.+|++|.=-+-+|-
T Consensus 49 g~~Eqdp~~~w~~~~~~i~~~~~~~~~--~~~-----~I~aIgis~~~~~~v~~D~ 97 (548)
T PRK04123 49 NQALQHPLDYIESLEAAIPAVLKEAGV--DPA-----AVVGIGVDFTGSTPAPVDA 97 (548)
T ss_pred CceeeCHHHHHHHHHHHHHHHHHHcCC--Chh-----hEEEEEEecccceeEEECC
Confidence 445667889988888888777654322 222 5999999998655555554
No 60
>PRK06460 hypothetical protein; Provisional
Probab=23.75 E-value=1.3e+02 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHH
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNAL 32 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI 32 (82)
.|.|++.||=+ ++|+|.+=+...++.+
T Consensus 349 ~~liR~svGlE--~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 349 DSLLRLSVGIE--DVNDLIEDLDRALSTL 375 (376)
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHhh
Confidence 57899999999 5899999888887754
No 61
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.72 E-value=2.2e+02 Score=18.72 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=25.1
Q ss_pred eeeeeeecCCCCHH-HHHHHHHHHHHHHHhhCCC
Q 034832 6 NVHVGLGKVSLKEE-LLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 6 ~Ih~~IGk~sF~~e-~L~eNi~avl~aI~~~kp~ 38 (82)
.|=+.+|.=++... +..+|+..+++.|++..|.
T Consensus 60 ~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~ 93 (177)
T cd01844 60 LYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPD 93 (177)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcC
Confidence 44556666666555 7999999999999988773
No 62
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.13 E-value=1.1e+02 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=26.5
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCC
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp 37 (82)
.|.|++.||=++ .|+|.+=+...++.+.....
T Consensus 365 ~~liR~svGlE~--~~dli~dl~~al~~~~~~~~ 396 (405)
T PRK08776 365 DGLLRLSVGIES--AEDLLIDLRAGLARAEAVLT 396 (405)
T ss_pred CCeEEEEeCcCC--HHHHHHHHHHHHHHhHHHHH
Confidence 478999999994 99999999888888765543
No 63
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=23.13 E-value=1.5e+02 Score=19.18 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhCC
Q 034832 16 LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp 37 (82)
.+.++..+|+..+++.+++..|
T Consensus 85 ~~~~~~~~~~~~~i~~~~~~~~ 106 (199)
T cd01838 85 VPLDEYKENLRKIVSHLKSLSP 106 (199)
T ss_pred ccHHHHHHHHHHHHHHHHhhCC
Confidence 4689999999999999997544
No 64
>PLN02295 glycerol kinase
Probab=23.04 E-value=2.4e+02 Score=22.46 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=35.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
|-..++++++.+++...+..+.+..+.... . ...-|..|.+|+.|.=-+-+|
T Consensus 39 G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~-~--i~~~i~aIg~s~q~~~~v~~d 90 (512)
T PLN02295 39 GWVEHDPMEILESVLTCIAKALEKAAAKGH-N--VDSGLKAIGITNQRETTVAWS 90 (512)
T ss_pred CcEeeCHHHHHHHHHHHHHHHHHHcCCCcc-c--cccceEEEEEecCcceEEEEE
Confidence 667789999999998888887765432111 1 000279999999887667773
No 65
>TIGR01906 integ_TIGR01906 integral membrane protein TIGR01906. This model represents a family of highly hydrophobic, uncharacterized predicted integral membrane proteins found almost entirely in low-GC Gram-positive bacteria, although a member is also found in the early-branching bacterium Aquifex aeolicus.
Probab=22.96 E-value=90 Score=22.45 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~ 35 (82)
-..+++.+|+.+|...+++.+...
T Consensus 42 ~~~gms~~~i~~~y~~ll~YL~~p 65 (207)
T TIGR01906 42 KRVGLEKEEILKDYSLMIKYLNNP 65 (207)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCc
Confidence 346899999999999999999743
No 66
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=22.91 E-value=51 Score=24.90 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCC
Q 034832 19 ELLRENVGAFVNALLLAKPAGLKK 42 (82)
Q Consensus 19 e~L~eNi~avl~aI~~~kp~~~Kg 42 (82)
.+++|||+|||-+-+-..|-...-
T Consensus 103 AKvm~~ikavLgaTKiDLPVDIND 126 (238)
T PF02084_consen 103 AKVMEDIKAVLGATKIDLPVDIND 126 (238)
T ss_pred HHHHHHHHHHhcccccccccccCC
Confidence 589999999999988777765543
No 67
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=22.73 E-value=1.9e+02 Score=19.57 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCC
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTM 59 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTM 59 (82)
..=+.|+|.+-...++++|.+.-. .+.. -|-++.+|.|-
T Consensus 11 ~~nt~e~I~~at~eLl~~i~~~N~--l~~e-----divSv~FT~T~ 49 (117)
T cd02185 11 EENTAEEILEATRELLEEIIERNN--IKPE-----DIISVIFTVTP 49 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC--CCHH-----HEEEEEEEeCC
Confidence 445789999999999999986532 3333 69999999884
No 68
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=22.65 E-value=2.1e+02 Score=22.56 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=35.0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|...++++++.+.+...+..+....+...+ .|..|-+|++|.=-+-+|-
T Consensus 40 g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~-------~i~aIgis~~~~~~v~~D~ 88 (493)
T TIGR01311 40 GWVEHDPMEIWESVLSCIAEALAKAGIKPD-------DIAAIGITNQRETTVVWDK 88 (493)
T ss_pred CcEeeCHHHHHHHHHHHHHHHHHHcCCChh-------heeEEEEecCcceEEEEEC
Confidence 444568899998888888888755432112 5889999988876677773
No 69
>PF06816 NOD: NOTCH protein; InterPro: IPR010660 NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals []. NOD (NOTCH protein domain) represents a region present in many NOTCH proteins and NOTCH homologues in multiple species such as 0, NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. Role of NOD domain remains to be elucidated.; GO: 0030154 cell differentiation, 0016021 integral to membrane; PDB: 2OO4_A 3ETO_A 3I08_A 3L95_X.
Probab=22.36 E-value=86 Score=18.39 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhC
Q 034832 14 VSLKEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~k 36 (82)
+.++++++.+|...|+..+-...
T Consensus 13 vl~~P~~f~~~~~~FLr~Ls~~L 35 (57)
T PF06816_consen 13 VLMDPEEFRNNSVQFLRELSRVL 35 (57)
T ss_dssp ESS-HHHHHHTHHHHHHHHHHHC
T ss_pred EEeCHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999987653
No 70
>PRK00010 rplE 50S ribosomal protein L5; Validated
Probab=22.32 E-value=73 Score=22.67 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=39.8
Q ss_pred eeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehh
Q 034832 6 NVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQ 68 (82)
Q Consensus 6 ~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~ 68 (82)
+|++.||.... +...+++....|+.|-..+|...+.. +-|...-|.--|-=|++|.++
T Consensus 35 vin~gvg~~~~-~~~~l~~a~~~L~~ITGQkP~~t~aK----ksi~~fkiRkg~piG~kVTLR 92 (179)
T PRK00010 35 VLNMGVGEAVA-DKKLLENAVEDLTLITGQKPVVTKAK----KSIAGFKLREGMPIGCKVTLR 92 (179)
T ss_pred EEEccCcchhh-chHHHHHHHHHHHHHhCCceEEEecc----ccccccCCCCCCEEEEEEEEC
Confidence 57888888876 44566788899999999998633322 135555566666667777663
No 71
>PRK00047 glpK glycerol kinase; Provisional
Probab=22.01 E-value=2.1e+02 Score=22.58 Aligned_cols=48 Identities=6% Similarity=0.010 Sum_probs=35.0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
|-..++++++.+.+...+..+.+.-+. ... .|..|.+|+.|.=-+-+|
T Consensus 44 g~~e~d~~~~~~~~~~~~~~~~~~~~~--~~~-----~I~~Igis~~~~~~v~~D 91 (498)
T PRK00047 44 GWVEHDPNEIWASQLSVIAEALAKAGI--SPD-----QIAAIGITNQRETTVVWD 91 (498)
T ss_pred CeEeeCHHHHHHHHHHHHHHHHHHcCC--Chh-----HeeEEEEecCcceEEEEE
Confidence 445678999998888888888755322 222 599999999876667777
No 72
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=21.91 E-value=1.5e+02 Score=17.74 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=6.2
Q ss_pred ccceEEEec
Q 034832 49 YVNSFHMCS 57 (82)
Q Consensus 49 ~I~~v~lsS 57 (82)
.|+.|+++.
T Consensus 87 ~V~~V~ft~ 95 (99)
T PF03748_consen 87 KVKDVYFTD 95 (99)
T ss_pred cEEEEEEEE
Confidence 477777764
No 73
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=21.89 E-value=98 Score=24.80 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 034832 15 SLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~ 34 (82)
+.+.|+|.||+..||++|.-
T Consensus 202 ~i~~e~lwenl~yFL~~ViP 221 (394)
T TIGR00695 202 DIDEEKLRDNLAFFLQEILP 221 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999974
No 74
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.58 E-value=1.7e+02 Score=23.06 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=24.0
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHHHh
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~ 34 (82)
.|.|++.||=++ +|+|.+=+...++.+.+
T Consensus 402 ~~liRlsvGlE~--~~dli~dl~~Al~~~~~ 430 (433)
T PRK08134 402 EGTIRLSIGLED--ADDLIDDLKRALKAAEK 430 (433)
T ss_pred CCeEEEEeccCC--HHHHHHHHHHHHHhhhh
Confidence 468999999995 89999988888887543
No 75
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.57 E-value=1.5e+02 Score=23.44 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=24.2
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHHHh
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~ 34 (82)
.|.|++.||=++ +|+|.+=+...|+.+++
T Consensus 406 ~~liRlSvGlEd--~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 406 PGLVRLAVGIEG--IDDILADLEAGFAAAKA 434 (436)
T ss_pred CCeEEEEeccCC--HHHHHHHHHHHHHhhhc
Confidence 468999999994 89999999888887653
No 76
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=21.53 E-value=92 Score=21.47 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCC
Q 034832 14 VSLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp 37 (82)
+-|..+++..|+..+++.|....+
T Consensus 98 LRf~N~ev~~n~~~vl~~I~~~l~ 121 (129)
T COG2852 98 LRFWNDEVLQNIDRVLEEILAVLE 121 (129)
T ss_pred EEeccHHHHhHHHHHHHHHHHHHH
Confidence 458889999999999999987643
No 77
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=21.53 E-value=78 Score=22.33 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=23.5
Q ss_pred eeeeeecCCCC--HHHHHHHHHHHHHHHH
Q 034832 7 VHVGLGKVSLK--EELLRENVGAFVNALL 33 (82)
Q Consensus 7 Ih~~IGk~sF~--~e~L~eNi~avl~aI~ 33 (82)
+++.||+.-.. +++.+|+|+++++.+.
T Consensus 69 L~V~VGrI~le~~~~~~i~~I~eiC~e~~ 97 (150)
T TIGR03260 69 LRVQVGRIILELEDEDIVEEIEEICKEML 97 (150)
T ss_pred EEEEEeEEEEEecCHHHHHHHHHHHHhhC
Confidence 57788988887 9999999999998876
No 78
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=21.41 E-value=1.1e+02 Score=20.40 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 034832 18 EELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 18 ~e~L~eNi~avl~aI~~~kp~ 38 (82)
.||+.||++.+...=.+-.|+
T Consensus 5 ~e~~~~nLK~iVaEkL~~l~N 25 (107)
T PF11517_consen 5 QEQITENLKVIVAEKLKTLPN 25 (107)
T ss_dssp SHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHccccC
Confidence 899999999998876666664
No 79
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=21.36 E-value=1.5e+02 Score=20.02 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 034832 15 SLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~~ 35 (82)
.++.+++.+|+.++++.++..
T Consensus 87 ~~~~~~~~~~l~~li~~~~~~ 107 (191)
T PRK10528 87 GFPPQQTEQTLRQIIQDVKAA 107 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 368999999999999998754
No 80
>PF07314 DUF1461: Protein of unknown function (DUF1461); InterPro: IPR010178 This entry represents a family of highly hydrophobic, uncharacterised predicted integral membrane proteins found almost entirely in low-GC Gram-positive bacteria, although a member is also found in Aquifex aeolicus.
Probab=21.30 E-value=1e+02 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhCC
Q 034832 13 KVSLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 13 k~sF~~e~L~eNi~avl~aI~~~kp 37 (82)
..+++.+||.+|...+++.+....+
T Consensus 44 ~~gls~~~l~~~~~~l~~YL~~~~~ 68 (181)
T PF07314_consen 44 VTGLSKEELMKNYDQLIDYLNNPWD 68 (181)
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCcc
Confidence 3569999999999999999986544
No 81
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=21.13 E-value=80 Score=18.61 Aligned_cols=16 Identities=13% Similarity=0.507 Sum_probs=13.7
Q ss_pred eeeeecCCCCHHHHHH
Q 034832 8 HVGLGKVSLKEELLRE 23 (82)
Q Consensus 8 h~~IGk~sF~~e~L~e 23 (82)
-+++|++.|+.+++.+
T Consensus 46 ~ia~G~a~~ss~ei~~ 61 (74)
T PF01472_consen 46 VIAVGRANMSSEEIKK 61 (74)
T ss_dssp EEEEEEESSTHHHHHH
T ss_pred EEEEEEEecCHHHHHH
Confidence 4789999999999875
No 82
>PRK06767 methionine gamma-lyase; Provisional
Probab=21.11 E-value=1.3e+02 Score=23.01 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=22.4
Q ss_pred cceeeeeeecCCCCHHHHHHHHHHHHHHH
Q 034832 4 TSNVHVGLGKVSLKEELLRENVGAFVNAL 32 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e~L~eNi~avl~aI 32 (82)
.|.|++.||=++ .|+|.+=+...++.|
T Consensus 360 ~~l~R~svGlE~--~~dl~~dl~~al~~~ 386 (386)
T PRK06767 360 DNLIRLSVGLES--WEDIVSDLEQALKKI 386 (386)
T ss_pred CCeEEEEeccCC--HHHHHHHHHHHHhhC
Confidence 478999999996 899999888877653
No 83
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.11 E-value=3.1e+02 Score=21.16 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=30.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceE
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFP 64 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~ 64 (82)
|...++++++.+.+...++.+.+..+. ... -|..|.+++.| ||+.
T Consensus 37 g~~e~d~~~~~~~l~~~i~~~~~~~~~--~~~-----~I~gIgvs~~~-~g~v 81 (481)
T TIGR01312 37 GWSEQDPEDWWDATEEAIKELLEQASE--MGQ-----DIKGIGISGQM-HGLV 81 (481)
T ss_pred CCeeeCHHHHHHHHHHHHHHHHHhcCC--Ccc-----cEEEEEEecCC-ceeE
Confidence 334577899999999999888865432 211 48888887643 5543
No 84
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=20.83 E-value=2.1e+02 Score=19.28 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCC
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTM 59 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTM 59 (82)
..=+.|+|.+-...+++++.+.-. .... -|-++.+|.|-
T Consensus 11 ~~nt~e~I~~at~eLl~~ii~~N~--l~~e-----divSv~FT~T~ 49 (117)
T TIGR01796 11 ERNEAEEIGEAVAELLTELMERNE--LTPE-----DLISVIFTVTE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC--CCHH-----HEEEEEEEecC
Confidence 445789999999999999986532 2322 69999999884
No 85
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=20.43 E-value=2.2e+02 Score=22.84 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=30.8
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCC
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTM 59 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTM 59 (82)
|...++++++.+++...++.+.+..+. ... .|..|-+|+.+
T Consensus 39 g~~eqdp~~~~~~~~~~i~~~~~~~~~--~~~-----~I~~Igis~~~ 79 (541)
T TIGR01315 39 GLEGQSSVYIWQAICNCVKQVLAESKV--DPN-----SVKGIGFDATC 79 (541)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHcCC--Chh-----heEEEEecccc
Confidence 566789999999999988888765432 222 58999999863
No 86
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=20.11 E-value=1.3e+02 Score=22.19 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=19.4
Q ss_pred CCCcceeeee-eecCCCCHHHHHHHHHHHHH
Q 034832 1 MDNTSNVHVG-LGKVSLKEELLRENVGAFVN 30 (82)
Q Consensus 1 ~Dk~G~Ih~~-IGk~sF~~e~L~eNi~avl~ 30 (82)
+|++|.|.-. .|.. ++++|.+.|+.+|+
T Consensus 207 IDk~GkVv~~~~G~~--~~~~le~~I~~lL~ 235 (236)
T PLN02399 207 VDKNGKVVERYPPTT--SPFQIEKDIQKLLA 235 (236)
T ss_pred ECCCCcEEEEECCCC--CHHHHHHHHHHHhc
Confidence 4788866555 4543 77888888887764
No 87
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=20.09 E-value=1.6e+02 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.4
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHhh
Q 034832 11 LGKVSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 11 IGk~sF~~e~L~eNi~avl~aI~~~ 35 (82)
+...+|+.+++.+|-..+++.|++.
T Consensus 21 ~~~~~ipt~~v~~~p~~iv~~l~~~ 45 (343)
T PF07318_consen 21 IFYFSIPTEEVAKNPSIIVEELEEF 45 (343)
T ss_pred EEEeeccHHHhhhCHHHHHHHHHhc
Confidence 4667999999999999999999987
Done!