Query 034832
Match_columns 82
No_of_seqs 123 out of 903
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ov7_A 50S ribosomal protein L 99.9 2.4E-25 8.3E-30 151.8 7.9 63 1-68 74-136 (137)
2 3u42_A 50S ribosomal protein L 99.9 4.1E-24 1.4E-28 155.2 8.2 64 1-69 166-229 (229)
3 2ftc_A Mitochondrial ribosomal 99.9 2.2E-22 7.4E-27 142.1 7.7 64 1-70 123-188 (189)
4 2wwq_5 50S ribosomal protein L 99.9 1E-22 3.4E-27 148.2 6.1 67 1-72 165-231 (234)
5 3qoy_A 50S ribosomal protein L 99.9 7.1E-22 2.4E-26 144.5 9.4 69 1-74 169-237 (242)
6 3bbo_D Ribosomal protein L1; l 99.8 9.5E-21 3.2E-25 144.9 6.2 66 1-71 279-344 (352)
7 2zkr_5 60S ribosomal protein L 99.8 6.1E-20 2.1E-24 131.5 7.9 59 1-66 154-212 (212)
8 1mzp_A 50S ribosomal protein L 99.8 1.2E-19 3.9E-24 130.4 8.0 58 1-66 159-216 (217)
9 3j21_A 50S ribosomal protein L 99.8 5.6E-20 1.9E-24 132.0 6.4 59 1-66 157-215 (216)
10 1i2a_A 50S ribosomal protein L 99.8 2.5E-19 8.5E-24 128.8 7.4 59 1-66 154-212 (219)
11 3iz5_A 60S ribosomal protein L 99.8 2.8E-19 9.4E-24 128.1 5.7 58 1-65 158-215 (216)
12 3o58_A L10A, 60S ribosomal pro 99.7 7.7E-19 2.6E-23 125.9 -0.5 58 1-65 159-216 (217)
13 4h08_A Putative hydrolase; GDS 56.7 15 0.00051 23.3 4.0 33 6-38 77-111 (200)
14 2aze_B Transcription factor E2 56.7 5 0.00017 25.4 1.6 13 52-65 88-100 (106)
15 1oef_A Apolipoprotein E; glyco 51.0 19 0.00064 17.0 2.9 18 18-35 7-24 (26)
16 4gxh_A Pyrrolidone-carboxylate 46.3 21 0.00073 24.8 3.7 34 3-36 163-205 (216)
17 1x10_A Pyrrolidone-carboxylate 45.5 20 0.00069 24.7 3.4 33 3-35 161-206 (208)
18 1a2z_A Pyrrolidone carboxyl pe 44.2 28 0.00097 24.3 4.1 33 3-35 162-208 (220)
19 4hde_A SCO1/SENC family lipopr 44.0 21 0.00071 22.7 3.1 29 1-29 140-169 (170)
20 1dih_A Dihydrodipicolinate red 42.1 25 0.00084 24.9 3.5 51 7-77 97-147 (273)
21 3p8k_A Hydrolase, carbon-nitro 39.8 41 0.0014 23.3 4.3 36 2-37 16-51 (281)
22 1fxw_F Alpha2, platelet-activa 39.7 39 0.0013 22.0 4.0 32 6-37 97-130 (229)
23 1iu8_A Pyrrolidone-carboxylate 39.7 32 0.0011 23.7 3.7 33 3-35 158-199 (206)
24 4hps_A Pyrrolidone-carboxylate 38.1 31 0.0011 24.3 3.5 33 3-35 184-225 (228)
25 3kij_A Probable glutathione pe 37.8 17 0.00058 22.9 1.9 34 1-35 142-175 (180)
26 2rli_A SCO2 protein homolog, m 37.3 44 0.0015 20.2 3.8 32 1-33 136-167 (171)
27 1jfu_A Thiol:disulfide interch 37.2 39 0.0013 21.0 3.6 29 2-30 151-180 (186)
28 2jwk_A Protein TOLR; periplasm 36.9 29 0.001 19.0 2.7 28 2-29 10-40 (74)
29 4f3y_A DHPR, dihydrodipicolina 36.5 35 0.0012 24.3 3.6 51 7-77 98-148 (272)
30 2ebj_A Pyrrolidone carboxyl pe 35.7 12 0.00041 25.6 1.0 29 3-31 155-191 (192)
31 3me7_A Putative uncharacterize 35.3 41 0.0014 21.1 3.5 28 1-28 133-160 (170)
32 3hkx_A Amidase; alpha-beta-BET 34.4 28 0.00095 24.2 2.7 35 2-36 16-50 (283)
33 3ezw_A Glycerol kinase; glycer 33.2 64 0.0022 24.5 4.8 49 12-67 43-91 (526)
34 2ggt_A SCO1 protein homolog, m 32.0 51 0.0018 19.7 3.4 29 1-30 133-161 (164)
35 3kh7_A Thiol:disulfide interch 30.8 74 0.0025 19.9 4.1 32 2-35 140-172 (176)
36 3lac_A Pyrrolidone-carboxylate 30.1 28 0.00094 24.2 2.1 33 3-35 162-203 (215)
37 2q0q_A ARYL esterase; SGNH hyd 29.0 63 0.0022 20.2 3.6 31 6-36 86-122 (216)
38 2hsj_A Putative platelet activ 28.6 75 0.0026 19.9 3.9 23 15-37 101-123 (214)
39 2p5t_B PEZT; postsegregational 27.4 1.2E+02 0.0041 20.3 5.0 25 14-38 4-28 (253)
40 3ijp_A DHPR, dihydrodipicolina 27.3 46 0.0016 24.0 3.0 50 7-76 113-162 (288)
41 3mil_A Isoamyl acetate-hydroly 27.0 1.2E+02 0.0039 19.2 4.6 21 15-35 92-112 (240)
42 1p9l_A Dihydrodipicolinate red 26.8 71 0.0024 22.3 3.8 52 7-75 70-121 (245)
43 3dci_A Arylesterase; SGNH_hydr 26.6 1.2E+02 0.0042 19.5 4.8 31 6-36 104-140 (232)
44 3fw2_A Thiol-disulfide oxidore 26.4 85 0.0029 18.6 3.7 26 2-31 124-149 (150)
45 1xhj_A Nitrogen fixation prote 25.0 26 0.00088 21.4 1.0 19 15-33 2-20 (88)
46 3hp4_A GDSL-esterase; psychrot 25.0 84 0.0029 19.1 3.6 22 14-35 81-102 (185)
47 2p4h_X Vestitone reductase; NA 24.8 1.3E+02 0.0043 20.1 4.7 34 4-38 76-114 (322)
48 3sdb_A Glutamine-dependent NAD 24.7 44 0.0015 26.8 2.6 35 3-37 9-43 (680)
49 1es9_A PAF-AH, platelet-activa 24.1 1.5E+02 0.005 19.0 4.9 33 5-37 95-129 (232)
50 3f9u_A Putative exported cytoc 23.7 1.1E+02 0.0036 18.8 3.9 33 2-35 138-171 (172)
51 1g6u_A Domain swapped dimer; d 23.3 93 0.0032 16.8 3.0 12 12-23 13-24 (48)
52 1ivn_A Thioesterase I; hydrola 23.0 1.4E+02 0.0047 18.3 4.4 30 6-35 65-98 (190)
53 3fkf_A Thiol-disulfide oxidore 22.9 64 0.0022 18.7 2.6 25 2-30 122-146 (148)
54 1xzo_A BSSCO, hypothetical pro 22.6 1.1E+02 0.0036 18.5 3.7 29 1-29 142-171 (174)
55 1pcf_A P15, transcriptional co 22.1 57 0.0019 18.9 2.1 21 14-34 42-65 (66)
56 2v75_A Nuclear polyadenylated 22.0 46 0.0016 21.2 1.8 23 16-38 1-23 (104)
57 3gkn_A Bacterioferritin comigr 21.9 47 0.0016 20.1 1.9 29 1-31 131-159 (163)
58 1xho_A Chorismate mutase; sout 21.7 1.9E+02 0.0064 19.4 6.4 45 8-59 36-80 (148)
59 1zzo_A RV1677; thioredoxin fol 21.7 84 0.0029 17.7 2.9 26 2-29 109-134 (136)
60 3if4_A Integron cassette prote 21.6 42 0.0014 21.7 1.6 17 1-17 32-48 (119)
61 1txp_A HnRNP C, heterogeneous 21.5 87 0.003 15.4 2.5 17 19-35 9-25 (28)
62 3hz6_A Xylulokinase; xylulose, 21.0 1.9E+02 0.0065 21.8 5.4 47 13-67 45-91 (511)
63 2p3r_A Glycerol kinase; glycer 20.9 1.9E+02 0.0067 21.7 5.5 48 14-68 44-91 (510)
64 4f4h_A Glutamine dependent NAD 20.8 54 0.0018 25.6 2.3 32 7-38 7-38 (565)
65 3ll3_A Gluconate kinase; xylul 20.8 1.7E+02 0.006 21.9 5.2 44 14-67 45-88 (504)
66 3giu_A Pyrrolidone-carboxylate 20.7 49 0.0017 22.9 1.9 32 3-34 163-203 (215)
67 4e1j_A Glycerol kinase; struct 20.6 1.8E+02 0.0061 22.0 5.2 47 14-67 67-113 (520)
68 3l0q_A Xylulose kinase; xlylul 20.4 1.1E+02 0.0037 23.4 4.0 47 12-66 44-90 (554)
69 1f3m_A Serine/threonine-protei 20.3 80 0.0027 18.7 2.6 22 13-34 40-61 (80)
70 3fmb_A Dimeric protein of unkn 20.1 1.6E+02 0.0055 18.0 5.4 40 14-61 31-70 (118)
No 1
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.92 E-value=2.4e-25 Score=151.76 Aligned_cols=63 Identities=38% Similarity=0.593 Sum_probs=61.1
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehh
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQ 68 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~ 68 (82)
+||.|+||++||+++|++|||+||+.|++++|.+.+|.+.||+ ||+++|||||||||++||..
T Consensus 74 ~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~-----~ik~v~issTMGp~i~id~~ 136 (137)
T 2ov7_A 74 NDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTTMGPSVRINPH 136 (137)
T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSC-----SEEEEEEEETTSCCEEBCTT
T ss_pred ECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCc-----eEEEEEEECCCCCCEEecCC
Confidence 5999999999999999999999999999999999999999999 99999999999999999974
No 2
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=99.90 E-value=4.1e-24 Score=155.17 Aligned_cols=64 Identities=38% Similarity=0.582 Sum_probs=61.6
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhh
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS 69 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~ 69 (82)
+||.|+||++||+++|++|||.||+.+++++|.+.+|++.||+ ||+++||||||||||+||+.+
T Consensus 166 ~dk~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~-----~ik~v~lssTmGp~i~id~~s 229 (229)
T 3u42_A 166 NDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTVMGPSVRINPHS 229 (229)
T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSC-----SEEEEEEECSSSCCEEBCTTC
T ss_pred eCCCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCC-----eEEEEEEECCCCcCeEeCCCC
Confidence 5899999999999999999999999999999999999999998 999999999999999999864
No 3
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.87 E-value=2.2e-22 Score=142.12 Aligned_cols=64 Identities=16% Similarity=0.315 Sum_probs=60.9
Q ss_pred CCCcc--eeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhH
Q 034832 1 MDNTS--NVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSL 70 (82)
Q Consensus 1 ~Dk~G--~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~ 70 (82)
+||.| ++|++||+++|++|||.||+.+++++|.+++|.+. |+ ||++++|||||||||+||+.++
T Consensus 123 ~~k~~~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~-g~-----~ik~v~lssTmgp~i~i~~~~l 188 (189)
T 2ftc_A 123 VDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNL-GP-----FVVRAFLRSSTSEGLLLKIDPL 188 (189)
T ss_pred eccCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCchhc-Cc-----cEEEEEEECCCCCCEEEehhhc
Confidence 47888 99999999999999999999999999999999988 88 9999999999999999998875
No 4
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=99.87 E-value=1e-22 Score=148.16 Aligned_cols=67 Identities=33% Similarity=0.509 Sum_probs=63.7
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSR 72 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~ 72 (82)
+||.|+||++||+++|++|||.||+.+++++|.+.+|.+.||+ ||+++|||||||||++||+.++..
T Consensus 165 ~~k~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~-----~Ik~v~lksTmgp~i~id~~~~~~ 231 (234)
T 2wwq_5 165 NDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGV-----YIKKVSISTTMGAGVAVDQAGLSA 231 (234)
T ss_dssp CSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSC-----CEEEEEEEESSSCEEEESSSCCCS
T ss_pred ecCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCC-----eEEEEEEECCCCCCEEEehHHhhh
Confidence 5899999999999999999999999999999999999999998 999999999999999999887643
No 5
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=99.86 E-value=7.1e-22 Score=144.53 Aligned_cols=69 Identities=35% Similarity=0.594 Sum_probs=65.1
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHHHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRAL 74 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~~~ 74 (82)
+||.|+||++||+++|++|||.||+.+++++|.+.+|.+.||+ ||+++|||||||||++||+..+...+
T Consensus 169 ~~k~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~-----~Ik~v~lkSTmGp~i~i~~~~~~~~~ 237 (242)
T 3qoy_A 169 VDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQ-----YIKNMAVSLTMSPSVKLDINEVLKKL 237 (242)
T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSC-----SEEEEEEEETTSCCEEBCHHHHHHHH
T ss_pred ecCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCc-----eEEEEEEECCCCCCEEEEhhHhChhh
Confidence 5899999999999999999999999999999999999988998 99999999999999999998885544
No 6
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.82 E-value=9.5e-21 Score=144.89 Aligned_cols=66 Identities=36% Similarity=0.547 Sum_probs=62.0
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 71 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~ 71 (82)
+||.|+||++||+++|++|||.||+.+++++|.+.+|.+.||+ ||+++|||||||||++|+..++.
T Consensus 279 ~dK~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~-----yIksv~LkSTMGPgi~I~~~~l~ 344 (352)
T 3bbo_D 279 VDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGV-----YWKSAHISSSMGPSIRLNIREML 344 (352)
T ss_dssp CCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSC-----SEEEEECCBSSSCCCEECTTC--
T ss_pred eCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCc-----eEEEEEEECCCCCCEEEEhhhcc
Confidence 5899999999999999999999999999999999999999998 99999999999999999987763
No 7
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.81 E-value=6.1e-20 Score=131.46 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=55.3
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
+||.|++|++||+++|++|||.||+.+++++|.+.+|.+. + ||+++|||||||||++|+
T Consensus 154 ~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~--~-----~ik~v~lksTmgp~i~i~ 212 (212)
T 2zkr_5 154 SGERRTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGP--L-----NIDTVYVKTTMGPAMEVA 212 (212)
T ss_dssp CSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCT--T-----TEEEEEEEESSSCCEEC-
T ss_pred ecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccc--c-----cEEEEEEECCCCCCEECC
Confidence 5899999999999999999999999999999999999876 3 999999999999999985
No 8
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=99.80 E-value=1.2e-19 Score=130.42 Aligned_cols=58 Identities=28% Similarity=0.284 Sum_probs=55.3
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
+|+.|++|++||+++|++|||+||+.+++++|.+.+|. . + ||+++|||||||||++||
T Consensus 159 ~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~--~-----~ik~v~lksTmgp~i~i~ 216 (217)
T 1mzp_A 159 TKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-E--T-----NLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp CSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-T--T-----TEEEEEEEETTSCCEECC
T ss_pred ecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-c--h-----heEEEEEECCCCCCeeCC
Confidence 58999999999999999999999999999999999998 6 4 999999999999999987
No 9
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.80 E-value=5.6e-20 Score=131.99 Aligned_cols=59 Identities=29% Similarity=0.445 Sum_probs=55.6
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
+|+.|+||++||+++|++|||.||+.+++++|.+.+|.+.+ ||+++|||||||||++|+
T Consensus 157 ~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k-------~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 157 LKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGES-------QVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp EETTTEEECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSC-------SEEEEEEEESSSCCEECC
T ss_pred cCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcccccc-------ceEEEEEECCCCCCEEcc
Confidence 37899999999999999999999999999999999998654 999999999999999987
No 10
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=99.78 E-value=2.5e-19 Score=128.83 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=55.2
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
+|+.|+||++||+++|++|||.||+.+++++|.+.+|.+. + ||+++|||||||||++|=
T Consensus 154 ~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~--~-----~ik~v~lksTmgp~i~iy 212 (219)
T 1i2a_A 154 TRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGL--Y-----HIKDAYVKLTMGPAVKVK 212 (219)
T ss_dssp CTTSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGG--G-----GEEEEEEEETTSCCEECC
T ss_pred ecCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCccc--c-----ceEEEEEECCCCCCEEeE
Confidence 4889999999999999999999999999999999999765 3 999999999999999973
No 11
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=99.77 E-value=2.8e-19 Score=128.14 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEe
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
+|+.|++|++||+++|++|||+||+.+++++|.+.+|. +++ ||+++|||||||||++|
T Consensus 158 ~~k~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~--~~~-----~Iksv~iksTmgp~i~i 215 (216)
T 3iz5_A 158 LKKVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKK--NWQ-----NVRCLYVKSTMGKRVRV 215 (216)
T ss_dssp TTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSC--CSC-----SCSEEEECCSSCCCEEE
T ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccC--CCc-----eEEEEEEECCCCCCEec
Confidence 48999999999999999999999999999999999985 666 99999999999999987
No 12
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=99.70 E-value=7.7e-19 Score=125.91 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=53.8
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEe
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 65 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~i 65 (82)
+|+.|++|++||+++|++|||+||+.+++++|.+.+|. +++ ||+++|||||||||++|
T Consensus 159 ~~k~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk--~~~-----~iksi~lksTmgp~i~i 216 (217)
T 3o58_A 159 LKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKK--NWQ-----NVGSLVVKSSMGPAFRL 216 (217)
T ss_dssp CCSSSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSS--CSC-----CCSCCCCCSSSSCSCCC
T ss_pred eCCCCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhccc--CCc-----eEEEEEEECCCCCCEec
Confidence 48999999999999999999999999999999999985 345 99999999999999976
No 13
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=56.72 E-value=15 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=25.5
Q ss_pred eeeeeeec--CCCCHHHHHHHHHHHHHHHHhhCCC
Q 034832 6 NVHVGLGK--VSLKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 6 ~Ih~~IGk--~sF~~e~L~eNi~avl~aI~~~kp~ 38 (82)
+|.+.+|. ...+.++..+|+.++++.+++.-|.
T Consensus 77 ~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~~p~ 111 (200)
T 4h08_A 77 VIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKYAPK 111 (200)
T ss_dssp EEEECCCSSCTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred eEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhhCCC
Confidence 45555555 4568999999999999999987663
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=56.69 E-value=5 Score=25.39 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=10.6
Q ss_pred eEEEecCCCCceEe
Q 034832 52 SFHMCSTMGPSFPV 65 (82)
Q Consensus 52 ~v~lsSTMGPgi~i 65 (82)
.++|+||+|| |.|
T Consensus 88 qi~LkS~~GP-IdV 100 (106)
T 2aze_B 88 QISLKSKQGP-IDV 100 (106)
T ss_dssp EEEEECSSSC-CEE
T ss_pred EEEEECCCCC-EEE
Confidence 6999999997 444
No 15
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=51.02 E-value=19 Score=17.02 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034832 18 EELLRENVGAFVNALLLA 35 (82)
Q Consensus 18 ~e~L~eNi~avl~aI~~~ 35 (82)
.|++.+++.++++.|.+.
T Consensus 7 ~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 589999999999998754
No 16
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=46.34 E-value=21 Score=24.78 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.7
Q ss_pred Ccceeeeee---------ecCCCCHHHHHHHHHHHHHHHHhhC
Q 034832 3 NTSNVHVGL---------GKVSLKEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 3 k~G~Ih~~I---------Gk~sF~~e~L~eNi~avl~aI~~~k 36 (82)
+.|.||+|. |+-+|+.|++.+=++++++++.+..
T Consensus 163 ~~gFIHVP~lpeq~~~~~~~psm~l~~~~~al~~~i~~~~~~~ 205 (216)
T 4gxh_A 163 RGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKIAIETAWKNT 205 (216)
T ss_dssp EEEEEEECBCHHHHHHHSSCCBCCHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEcCCChHhhccCCCCCCCCHHHHHHHHHHHHHHHHccc
Confidence 568999995 6779999999999999999887653
No 17
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=45.50 E-value=20 Score=24.70 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.4
Q ss_pred Ccceeeeee-----------ec--CCCCHHHHHHHHHHHHHHHHhh
Q 034832 3 NTSNVHVGL-----------GK--VSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 3 k~G~Ih~~I-----------Gk--~sF~~e~L~eNi~avl~aI~~~ 35 (82)
+.|.||+|. |. -+|+.|++.+=++++++++.+.
T Consensus 161 ~~gFIHVP~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~~~~ 206 (208)
T 1x10_A 161 MSGFIHVPYIPEQIIDKIGKGQVPPSMSYEMALEAVKVAIEVALEE 206 (208)
T ss_dssp EEEEEEECBCGGGTHHHHTTSCCCCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCchhhhcccCcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 678999995 33 6899999999999999887653
No 18
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=44.24 E-value=28 Score=24.26 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=26.9
Q ss_pred Ccceeeeee--------------ecCCCCHHHHHHHHHHHHHHHHhh
Q 034832 3 NTSNVHVGL--------------GKVSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 3 k~G~Ih~~I--------------Gk~sF~~e~L~eNi~avl~aI~~~ 35 (82)
+.|.||+|. |.-+|+.|++.+=++++++++.+.
T Consensus 162 ~~gFIHVP~l~~~~~~~~~~~~~~~p~ms~e~~~~al~~~i~~~~~~ 208 (220)
T 1a2z_A 162 KAGFIHVPYTPDQVVNKFFLLGKNTPSMCLEAEIKAIELAVKVSLDY 208 (220)
T ss_dssp EEEEEEECCCGGGGTTCEEETTEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeCCChhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 568899984 344899999999999999888754
No 19
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=44.03 E-value=21 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCCcceeeeee-ecCCCCHHHHHHHHHHHH
Q 034832 1 MDNTSNVHVGL-GKVSLKEELLRENVGAFV 29 (82)
Q Consensus 1 ~Dk~G~Ih~~I-Gk~sF~~e~L~eNi~avl 29 (82)
.|+.|.|.... |....+.|+|++-|+.++
T Consensus 140 iD~~G~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 140 IDQNGKVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp ECTTSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred EcCCCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence 38899887655 555667789998888776
No 20
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=42.07 E-value=25 Score=24.87 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=33.1
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHHHHhhh
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQY 77 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~~~~~~ 77 (82)
+|+.+|+..|+++|+ +.|.+. ++.. .+.+++-|++|+.+-.+-+..++..+
T Consensus 97 ~~vVigTtG~~~e~~--------~~L~~~----a~~~--------~vv~a~N~siGvn~~~~l~~~aa~~~ 147 (273)
T 1dih_A 97 KGMVIGTTGFDEAGK--------QAIRDA----AADI--------AIVFAANFSVGVNVMLKLLEKAAKVM 147 (273)
T ss_dssp CEEEECCCCCCHHHH--------HHHHHH----TTTS--------CEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHH--------HHHHHh----cCCC--------CEEEEecCcHHHHHHHHHHHHHHHhc
Confidence 688999999999873 223322 1211 37889999999877555555555443
No 21
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=39.84 E-value=41 Score=23.26 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=29.9
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCC
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp 37 (82)
+..+.+.+++-+......++.+|+..+.+.+.++..
T Consensus 16 ~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~ 51 (281)
T 3p8k_A 16 PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMN 51 (281)
T ss_dssp CTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCC
T ss_pred ccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHh
Confidence 345678888888888778899999999999998754
No 22
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=39.68 E-value=39 Score=21.96 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=25.5
Q ss_pred eeeeeeecCC--CCHHHHHHHHHHHHHHHHhhCC
Q 034832 6 NVHVGLGKVS--LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 6 ~Ih~~IGk~s--F~~e~L~eNi~avl~aI~~~kp 37 (82)
.|-+.+|.=+ ++.+++.+|+..+++.+++..|
T Consensus 97 ~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p 130 (229)
T 1fxw_F 97 VIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQP 130 (229)
T ss_dssp EEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4555666554 5889999999999999998866
No 23
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=39.66 E-value=32 Score=23.67 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=27.3
Q ss_pred Ccceeeeeeec---------CCCCHHHHHHHHHHHHHHHHhh
Q 034832 3 NTSNVHVGLGK---------VSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 3 k~G~Ih~~IGk---------~sF~~e~L~eNi~avl~aI~~~ 35 (82)
+.|.||+|.=. -+|+.|++.+=+++++.++.+.
T Consensus 158 ~~gFIHVP~~~~~~~~~~~~p~~~~~~~~~al~~~i~~~~~~ 199 (206)
T 1iu8_A 158 IAGFIHVPYTPDQVLEKKNTPSMSLDLEIKGVEIAIRVAQSA 199 (206)
T ss_dssp EEEEEEECBCGGGCTTCTTCCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCChhhhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999644 3899999999999999888653
No 24
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=38.07 E-value=31 Score=24.30 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=27.7
Q ss_pred CcceeeeeeecC---------CCCHHHHHHHHHHHHHHHHhh
Q 034832 3 NTSNVHVGLGKV---------SLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 3 k~G~Ih~~IGk~---------sF~~e~L~eNi~avl~aI~~~ 35 (82)
+.|.||+|.=.. +|+.|++.+=++++++++.+.
T Consensus 184 ~~gFIHVP~l~eq~~~~~~~psmsl~~~~~al~~~i~~~~~~ 225 (228)
T 4hps_A 184 RGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKIAIETAWKN 225 (228)
T ss_dssp EEEEEEECCCGGGGCSSSCCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEcCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 568899987554 899999999999999988754
No 25
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=37.77 E-value=17 Score=22.93 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=24.8
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhh
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~ 35 (82)
.|++|.|..... -..++++|.+-|..+++.+.+.
T Consensus 142 id~~G~i~~~~~-g~~~~~~l~~~i~~lL~~~~~~ 175 (180)
T 3kij_A 142 VNPEGQVVKFWR-PEEPIEVIRPDIAALVRQVIIK 175 (180)
T ss_dssp ECTTSCEEEEEC-TTCCGGGTHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHhcc
Confidence 378888875542 2356788999999998888754
No 26
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=37.28 E-value=44 Score=20.22 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=23.2
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHHHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNALL 33 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~ 33 (82)
.|++|.|.....- .++.++|.+-|+.++++.+
T Consensus 136 id~~G~i~~~~~g-~~~~~~l~~~l~~ll~~~~ 167 (171)
T 2rli_A 136 LNPDGLFTDYYGR-SRSAEQISDSVRRHMAAFR 167 (171)
T ss_dssp ECTTSCEEEEEES-SCCHHHHHHHHHHHHHHHC
T ss_pred ECCCCeEEEEECC-CCCHHHHHHHHHHHHHHHH
Confidence 3788888766532 4678999999988887643
No 27
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=37.22 E-value=39 Score=21.01 Aligned_cols=29 Identities=14% Similarity=-0.055 Sum_probs=21.9
Q ss_pred CCcceee-eeeecCCCCHHHHHHHHHHHHH
Q 034832 2 DNTSNVH-VGLGKVSLKEELLRENVGAFVN 30 (82)
Q Consensus 2 Dk~G~Ih-~~IGk~sF~~e~L~eNi~avl~ 30 (82)
|++|.|. .-.|..+++.++|.+-|+.++.
T Consensus 151 d~~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 180 (186)
T 1jfu_A 151 DPQGCEIATIAGPAEWASEDALKLIRAATG 180 (186)
T ss_dssp CTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred CCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence 7888775 4568888888888887776653
No 28
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=36.93 E-value=29 Score=18.96 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=19.5
Q ss_pred CCcceeeeeeec---CCCCHHHHHHHHHHHH
Q 034832 2 DNTSNVHVGLGK---VSLKEELLRENVGAFV 29 (82)
Q Consensus 2 Dk~G~Ih~~IGk---~sF~~e~L~eNi~avl 29 (82)
|++|.+.+.++. ..++.++|.+.+.++.
T Consensus 10 ~~dG~~~~~~~~~~~~~v~~~~L~~~l~~~~ 40 (74)
T 2jwk_A 10 AGIGKYAISIGGERQEGLTEEMVTQLSRQEF 40 (74)
T ss_dssp CSSSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred ecCccEEEecCCCcCcccCHHHHHHHHHHHH
Confidence 677877776656 7778888777665544
No 29
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=36.48 E-value=35 Score=24.27 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=34.2
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHHHHhhh
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQY 77 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~~~~~~ 77 (82)
+++.||+..|+++++.+ |.+.. +.. .+.+++-|+.|+.|-.+-+..++.-+
T Consensus 98 ~~vVigTTG~s~~~~~~--------L~~aa----~~~--------~vv~a~N~s~Gv~l~~~~~~~aa~~l 148 (272)
T 4f3y_A 98 VKLVIGTTGFSEPQKAQ--------LRAAG----EKI--------ALVFSANMSVGVNVTMKLLEFAAKQF 148 (272)
T ss_dssp CEEEECCCCCCHHHHHH--------HHHHT----TTS--------EEEECSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCHHHHHH--------HHHHh----ccC--------CEEEECCCCHHHHHHHHHHHHHHHhc
Confidence 57889999999887532 33331 212 36899999999977665555555433
No 30
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=35.71 E-value=12 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=23.7
Q ss_pred CcceeeeeeecC--------CCCHHHHHHHHHHHHHH
Q 034832 3 NTSNVHVGLGKV--------SLKEELLRENVGAFVNA 31 (82)
Q Consensus 3 k~G~Ih~~IGk~--------sF~~e~L~eNi~avl~a 31 (82)
+.|.||+|.=.. +|+.|++.+=+++++++
T Consensus 155 ~~gFIHVP~~~~~~~~~~~p~~~~e~~~~al~~~i~~ 191 (192)
T 2ebj_A 155 PVGFLHLPPDETLALKRPRPYVPLEVQARAVRLALEH 191 (192)
T ss_dssp CEEEEEECCCHHHHHHSCCCCCCHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCChhhhcccCCCCCCHHHHHHHHHHHHhh
Confidence 678999997444 99999999988887754
No 31
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=35.31 E-value=41 Score=21.10 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=19.1
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAF 28 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~av 28 (82)
.|++|.|....--.++++++|.+-|.++
T Consensus 133 ID~~G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 133 LSPELQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp ECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred ECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 4889999866444578877776655443
No 32
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=34.43 E-value=28 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=29.1
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhC
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~k 36 (82)
+..+.+++++-+......++.+|+..+.+.+.++.
T Consensus 16 ~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~ 50 (283)
T 3hkx_A 16 IRGSHMRIALMQHTARPLDPQHNLDLIDDAAARAS 50 (283)
T ss_dssp CTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHH
T ss_pred ecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667888888888888789999999999998764
No 33
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=33.23 E-value=64 Score=24.49 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=35.4
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
|-..++++++.+++...+..+.++... ... -|..|-+|++|.=-+-+|-
T Consensus 43 G~~Eqdp~~~w~~~~~~i~~~l~~~~~--~~~-----~I~aIgis~q~~~~v~~D~ 91 (526)
T 3ezw_A 43 GWVEHDPMEIWATQSSTLVEVLAKADI--SSD-----QIAAIGITNQRETTIVWEK 91 (526)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHTC--CGG-----GEEEEEEEECSSCBEEEET
T ss_pred CcEEECHHHHHHHHHHHHHHHHHHcCC--Chh-----hEEEEEEeCCCCCEEEEEC
Confidence 334568999999988888777655322 222 6999999999877778874
No 34
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=31.99 E-value=51 Score=19.71 Aligned_cols=29 Identities=3% Similarity=0.147 Sum_probs=20.7
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVN 30 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~ 30 (82)
.|++|.|....+- .++.++|.+-|+.++.
T Consensus 133 id~~G~i~~~~~g-~~~~~~l~~~l~~ll~ 161 (164)
T 2ggt_A 133 IGPDGEFLDYFGQ-NKRKGEIAASIATHMR 161 (164)
T ss_dssp ECTTSCEEEEEET-TCCHHHHHHHHHHHHG
T ss_pred ECCCCeEEEEeCC-CCCHHHHHHHHHHHHH
Confidence 3788888776532 4678888888877764
No 35
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=30.76 E-value=74 Score=19.86 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCcceeeeee-ecCCCCHHHHHHHHHHHHHHHHhh
Q 034832 2 DNTSNVHVGL-GKVSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 2 Dk~G~Ih~~I-Gk~sF~~e~L~eNi~avl~aI~~~ 35 (82)
|++|.|.... |. ++.++|.+-|..+++.+...
T Consensus 140 d~~G~i~~~~~g~--~~~~~l~~~l~~~l~~l~~~ 172 (176)
T 3kh7_A 140 DKQGIIRHKIVGV--VDQKVWREQLAPLYQQLLDE 172 (176)
T ss_dssp CTTCBEEEEEESC--CCHHHHHHHTHHHHHHHHC-
T ss_pred CCCCeEEEEEcCC--CCHHHHHHHHHHHHHHHhhc
Confidence 7888776543 54 58899999999999888644
No 36
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=30.15 E-value=28 Score=24.20 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=27.4
Q ss_pred Ccceeeeeeec---------CCCCHHHHHHHHHHHHHHHHhh
Q 034832 3 NTSNVHVGLGK---------VSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 3 k~G~Ih~~IGk---------~sF~~e~L~eNi~avl~aI~~~ 35 (82)
+.|.||+|.=. -+|+.|++.+=++++++++.+.
T Consensus 162 ~~gFIHVP~~~~q~~~~~~~p~m~~~~~~~al~~~i~~~~~~ 203 (215)
T 3lac_A 162 KGGFIHIPFLPEQASNYPGQPSMSLSTIRKGIELAVEVTTTV 203 (215)
T ss_dssp EEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEeCCChHHhccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 46889999643 3899999999999999988763
No 37
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=28.96 E-value=63 Score=20.20 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=23.5
Q ss_pred eeeeeeecC------CCCHHHHHHHHHHHHHHHHhhC
Q 034832 6 NVHVGLGKV------SLKEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 6 ~Ih~~IGk~------sF~~e~L~eNi~avl~aI~~~k 36 (82)
.|-+.+|.= ..+.++..+|+..+++.+++.-
T Consensus 86 ~vvi~~G~ND~~~~~~~~~~~~~~~l~~li~~~~~~~ 122 (216)
T 2q0q_A 86 LVIIMLGTNDTKAYFRRTPLDIALGMSVLVTQVLTSA 122 (216)
T ss_dssp EEEEECCTGGGSGGGCCCHHHHHHHHHHHHHHHHTCT
T ss_pred EEEEEecCcccchhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555543 3588999999999999999765
No 38
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=28.59 E-value=75 Score=19.86 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCC
Q 034832 15 SLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~~kp 37 (82)
..+.++..+|+..+++.+++.-|
T Consensus 101 ~~~~~~~~~~l~~~i~~l~~~~p 123 (214)
T 2hsj_A 101 DVPVNEALNNLEAIIQSVARDYP 123 (214)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC
Confidence 45789999999999999998865
No 39
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=27.37 E-value=1.2e+02 Score=20.27 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCC
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~ 38 (82)
.+|+++++.+-+..+...+....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (253)
T 2p5t_B 4 QDYTDSEFKHALARNLRSLTRGKKS 28 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhcCHHHHHHHHHHHHHHHHccCCc
Confidence 5799999999999998888866553
No 40
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=27.26 E-value=46 Score=24.04 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=33.1
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHHHHhh
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQ 76 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~~~~~ 76 (82)
+++.||+..|+++++.+ |.+.. +.. .+.+++-|+.|+.|-.+-++.++..
T Consensus 113 v~vViGTTG~~~e~~~~--------L~~aa----~~~--------~~~~a~N~SiGv~ll~~l~~~aa~~ 162 (288)
T 3ijp_A 113 LIHIIGTTGFSKTEEAQ--------IADFA----KYT--------TIVKSGNMSLGVNLLANLVKRAAKA 162 (288)
T ss_dssp CEEEECCCCCCHHHHHH--------HHHHH----TTS--------EEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHH--------HHHHh----CcC--------CEEEECCCcHHHHHHHHHHHHHHHh
Confidence 67889999999887532 22221 112 4689999999997766555555543
No 41
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=26.97 E-value=1.2e+02 Score=19.15 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 034832 15 SLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~~~ 35 (82)
.++.++..+|+..+++.+++.
T Consensus 92 ~~~~~~~~~~l~~~i~~~~~~ 112 (240)
T 3mil_A 92 SVPLPEFIDNIRQMVSLMKSY 112 (240)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 458999999999999999875
No 42
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=26.76 E-value=71 Score=22.27 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=32.4
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehhhHHHHHh
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALD 75 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~~~~~~~~ 75 (82)
+++.||+..|++|++. .+.+.-+. .++. .+.+++.|+.|+.+-.+-+..++.
T Consensus 70 ~~~VigTTG~~~e~~~-----~l~~aa~~----~~~~--------~vv~a~N~siGv~ll~~l~~~aa~ 121 (245)
T 1p9l_A 70 IHAVVGTTGFTAERFQ-----QVESWLVA----KPNT--------SVLIAPNFAIGAVLSMHFAKQAAR 121 (245)
T ss_dssp CEEEECCCCCCHHHHH-----HHHHHHHT----STTC--------EEEECSCCCHHHHHHHHHHHHHGG
T ss_pred CCEEEcCCCCCHHHHH-----HHHHHHHh----CCCC--------CEEEECCccHHHHHHHHHHHHHHh
Confidence 6889999999998763 12222111 1222 467899999998765544444443
No 43
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=26.56 E-value=1.2e+02 Score=19.51 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=23.6
Q ss_pred eeeeeeecCCC------CHHHHHHHHHHHHHHHHhhC
Q 034832 6 NVHVGLGKVSL------KEELLRENVGAFVNALLLAK 36 (82)
Q Consensus 6 ~Ih~~IGk~sF------~~e~L~eNi~avl~aI~~~k 36 (82)
.|-+.+|.=++ +.+++.+|+..+++.+++..
T Consensus 104 ~VvI~~GtND~~~~~~~~~~~~~~~l~~li~~ir~~~ 140 (232)
T 3dci_A 104 LVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVETFI 140 (232)
T ss_dssp EEEEECCTTTTSGGGTSSHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeccCCCccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 45555554333 88999999999999999864
No 44
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=26.41 E-value=85 Score=18.59 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHHH
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVNA 31 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~a 31 (82)
|++|.|.... .+.++|.+-|..+++.
T Consensus 124 d~~G~i~~~~----~~~~~l~~~l~~ll~~ 149 (150)
T 3fw2_A 124 SSDGKILAKN----LRGEELKKKIENIVEE 149 (150)
T ss_dssp CTTSBEEEES----CCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcc----CCHHHHHHHHHHHHhc
Confidence 7888887655 3888888888887753
No 45
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=25.03 E-value=26 Score=21.38 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 034832 15 SLKEELLRENVGAFVNALL 33 (82)
Q Consensus 15 sF~~e~L~eNi~avl~aI~ 33 (82)
-|+.+++.+.++.+|+.|+
T Consensus 2 ~~t~~~~~~~I~~~L~~IR 20 (88)
T 1xhj_A 2 PTENPTMFDQVAEVIERLR 20 (88)
T ss_dssp CCCCSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhc
Confidence 4888999999999999876
No 46
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=24.96 E-value=84 Score=19.10 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 034832 14 VSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~ 35 (82)
..++.++..+|+..+++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~ 102 (185)
T 3hp4_A 81 RGFPVKKMQTNLTALVKKSQAA 102 (185)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHHHHHc
Confidence 3578999999999999999875
No 47
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}
Probab=24.81 E-value=1.3e+02 Score=20.11 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=20.7
Q ss_pred cceeeeeeecCCCCHH-----HHHHHHHHHHHHHHhhCCC
Q 034832 4 TSNVHVGLGKVSLKEE-----LLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 4 ~G~Ih~~IGk~sF~~e-----~L~eNi~avl~aI~~~kp~ 38 (82)
+.+||++ +..+++.+ -+.-|+......++..++.
T Consensus 76 d~vih~A-~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~ 114 (322)
T 2p4h_X 76 VGIFHTA-SPIDFAVSEPEEIVTKRTVDGALGILKACVNS 114 (322)
T ss_dssp SEEEECC-CCC--------CHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcC-CcccCCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678887 44444322 4556898888888877654
No 48
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=24.67 E-value=44 Score=26.79 Aligned_cols=35 Identities=9% Similarity=-0.060 Sum_probs=30.8
Q ss_pred CcceeeeeeecCCCCHHHHHHHHHHHHHHHHhhCC
Q 034832 3 NTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 3 k~G~Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp 37 (82)
++|.+++++.+.+....++..|+..+++.|.++..
T Consensus 9 ~~g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~ 43 (680)
T 3sdb_A 9 QHGFVRVAACTHHTTIGDPAANAASVLDMARACHD 43 (680)
T ss_dssp GGTEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999889999999999999987653
No 49
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=24.08 E-value=1.5e+02 Score=18.99 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.6
Q ss_pred ceeeeeeecCC--CCHHHHHHHHHHHHHHHHhhCC
Q 034832 5 SNVHVGLGKVS--LKEELLRENVGAFVNALLLAKP 37 (82)
Q Consensus 5 G~Ih~~IGk~s--F~~e~L~eNi~avl~aI~~~kp 37 (82)
-.|-+.+|.=+ .+.++..+|+..+++.+++..|
T Consensus 95 d~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p 129 (232)
T 1es9_A 95 KIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQP 129 (232)
T ss_dssp SEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHST
T ss_pred CEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34555666554 4789999999999999998865
No 50
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=23.67 E-value=1.1e+02 Score=18.78 Aligned_cols=33 Identities=9% Similarity=-0.114 Sum_probs=22.6
Q ss_pred CCcceeee-eeecCCCCHHHHHHHHHHHHHHHHhh
Q 034832 2 DNTSNVHV-GLGKVSLKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 2 Dk~G~Ih~-~IGk~sF~~e~L~eNi~avl~aI~~~ 35 (82)
|++|.+.. .+|-.+ +.+++.+-|..+++..++.
T Consensus 138 d~~G~~~~~~~G~~~-~~~~l~~~l~~~l~~~~~~ 171 (172)
T 3f9u_A 138 DNEGNPLNKSYAYDE-DISKYINFLQTGLENYRKE 171 (172)
T ss_dssp CTTSCBSSCCBCSCC-CHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEeeccCCCC-CHHHHHHHHHHHHHHhhcc
Confidence 66775543 345441 3899999999998887654
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.34 E-value=93 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=9.5
Q ss_pred ecCCCCHHHHHH
Q 034832 12 GKVSLKEELLRE 23 (82)
Q Consensus 12 Gk~sF~~e~L~e 23 (82)
-+..|++|+|..
T Consensus 13 kkegfspeelaa 24 (48)
T 1g6u_A 13 KKEGFSPEELAA 24 (48)
T ss_dssp HHTTCSHHHHHH
T ss_pred HHcCCCHHHHHH
Confidence 467899999864
No 52
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=22.99 E-value=1.4e+02 Score=18.33 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=22.9
Q ss_pred eeeeeeecCC----CCHHHHHHHHHHHHHHHHhh
Q 034832 6 NVHVGLGKVS----LKEELLRENVGAFVNALLLA 35 (82)
Q Consensus 6 ~Ih~~IGk~s----F~~e~L~eNi~avl~aI~~~ 35 (82)
.|-+.+|.=+ ++.++..+|+..+++.+++.
T Consensus 65 ~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~ 98 (190)
T 1ivn_A 65 WVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAA 98 (190)
T ss_dssp EEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeeccccccCCCHHHHHHHHHHHHHHHHHc
Confidence 3445555444 58999999999999999865
No 53
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=22.94 E-value=64 Score=18.67 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=17.8
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHHH
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFVN 30 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~ 30 (82)
|++|.|..... +.++|.+.+..+++
T Consensus 122 d~~G~i~~~~~----~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 122 SPTGKILARDI----QGEALTGKLKELLK 146 (148)
T ss_dssp CTTSBEEEESC----CHHHHHHHHHHHC-
T ss_pred CCCCeEEEecC----CHHHHHHHHHHHHc
Confidence 77888766554 88888888877653
No 54
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=22.64 E-value=1.1e+02 Score=18.49 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=19.8
Q ss_pred CCCcceeeee-eecCCCCHHHHHHHHHHHH
Q 034832 1 MDNTSNVHVG-LGKVSLKEELLRENVGAFV 29 (82)
Q Consensus 1 ~Dk~G~Ih~~-IGk~sF~~e~L~eNi~avl 29 (82)
.|++|.|... .|....+.++|.+-|+.++
T Consensus 142 id~~G~i~~~~~g~~~~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 142 VGPDGKVLKDYNGVENTPYDDIISDVKSAS 171 (174)
T ss_dssp ECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred ECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3788888764 4665556788887776654
No 55
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=22.11 E-value=57 Score=18.87 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=16.0
Q ss_pred CCCCHHH---HHHHHHHHHHHHHh
Q 034832 14 VSLKEEL---LRENVGAFVNALLL 34 (82)
Q Consensus 14 ~sF~~e~---L~eNi~avl~aI~~ 34 (82)
+|++.|| |.+|+.++-++|.+
T Consensus 42 IsL~~~qw~~l~~~~~~I~~ai~~ 65 (66)
T 1pcf_A 42 ISLNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHh
Confidence 5778887 88888887777764
No 56
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=22.00 E-value=46 Score=21.19 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC
Q 034832 16 LKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 16 F~~e~L~eNi~avl~aI~~~kp~ 38 (82)
+++|++.+|++.++.+=.+..|.
T Consensus 1 ~~~e~i~~nLK~ivaekL~~~~N 23 (104)
T 2v75_A 1 MSQEQYTENLKVIVAEKLAGIPN 23 (104)
T ss_dssp -----CHHHHHHHHHHHHTTSTT
T ss_pred CcHHHHHHHHHHHHHHHHccccC
Confidence 46799999999999887777765
No 57
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=21.88 E-value=47 Score=20.12 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=15.9
Q ss_pred CCCcceeeeeeecCCCCHHHHHHHHHHHHHH
Q 034832 1 MDNTSNVHVGLGKVSLKEELLRENVGAFVNA 31 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~~e~L~eNi~avl~a 31 (82)
.|++|.|.... .....++..+.+...+++
T Consensus 131 id~~G~i~~~~--~~~~~~~~~~~il~~l~~ 159 (163)
T 3gkn_A 131 LSPEGQVVQAW--RKVKVAGHADAVLAALKA 159 (163)
T ss_dssp ECTTSCEEEEE--CSCCSTTHHHHHHHHHHH
T ss_pred ECCCCeEEEEE--cCCCcccCHHHHHHHHHH
Confidence 38899998776 333444334444444433
No 58
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=21.75 E-value=1.9e+02 Score=19.40 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=32.9
Q ss_pred eeeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCC
Q 034832 8 HVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTM 59 (82)
Q Consensus 8 h~~IGk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTM 59 (82)
+-++--..=+.|+|.+....++++|.+.-. .+.. -|-+|.+|.|-
T Consensus 36 RGAtTve~Nt~e~I~~At~ELl~eii~~N~--l~~e-----DIvSv~FTvT~ 80 (148)
T 1xho_A 36 RGATTVSDNTADEIVAETQKLLKEMAEKNG--LEED-----DIISIIFTVTK 80 (148)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHHHHHTT--CCGG-----GEEEEEEEECT
T ss_pred eceeEcCCCCHHHHHHHHHHHHHHHHHHcC--CCHH-----HEEEEEEEeCC
Confidence 334444456899999999999999997632 3333 68999999884
No 59
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=21.66 E-value=84 Score=17.71 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=17.0
Q ss_pred CCcceeeeeeecCCCCHHHHHHHHHHHH
Q 034832 2 DNTSNVHVGLGKVSLKEELLRENVGAFV 29 (82)
Q Consensus 2 Dk~G~Ih~~IGk~sF~~e~L~eNi~avl 29 (82)
|++|.|..-.|. .+.++|.+-+..++
T Consensus 109 d~~g~i~~~~g~--~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 109 DPHGNVDVVRGR--MSQDELTRRVTALT 134 (136)
T ss_dssp CTTCCEEEEESC--CCHHHHHHHHHHHC
T ss_pred CCCCCEEEEecC--CCHHHHHHHHHHHh
Confidence 678887644454 45777777776654
No 60
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=21.58 E-value=42 Score=21.71 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.8
Q ss_pred CCCcceeeeeeecCCCC
Q 034832 1 MDNTSNVHVGLGKVSLK 17 (82)
Q Consensus 1 ~Dk~G~Ih~~IGk~sF~ 17 (82)
+|.+|.||+.-|.-+|+
T Consensus 32 vd~~Grihv~p~~s~Fp 48 (119)
T 3if4_A 32 IDGTGRIHVTPGESQFP 48 (119)
T ss_dssp ECTTSCEEEEESSCCCT
T ss_pred eccCCcEEEeeCCCcCc
Confidence 48899999999998886
No 61
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=21.48 E-value=87 Score=15.45 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034832 19 ELLRENVGAFVNALLLA 35 (82)
Q Consensus 19 e~L~eNi~avl~aI~~~ 35 (82)
-||..|+.++++.+.+-
T Consensus 9 tQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 9 TQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 47888999999888753
No 62
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=20.95 E-value=1.9e+02 Score=21.79 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=33.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 13 KVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 13 k~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
-...+++++.+.+...++.+. ..+ .... .|..|-+++.|.=-+-+|-
T Consensus 45 ~~e~dp~~~~~~~~~~i~~~~-~~~--~~~~-----~I~~Igis~q~~~~v~~D~ 91 (511)
T 3hz6_A 45 PVEQDAGDWYDAVQRIASSWW-QSG--VDAR-----RVSAIVLSGQMQNFLPLDQ 91 (511)
T ss_dssp CCEECHHHHHHHHHHHHHHHH-TTT--CCGG-----GEEEEEEEECCSCBEEECT
T ss_pred CEEECHHHHHHHHHHHHHHHH-hcC--CChh-----HeEEEEEecccccEEEECC
Confidence 345689999999998888887 322 2222 6999999997755566664
No 63
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=20.95 E-value=1.9e+02 Score=21.71 Aligned_cols=48 Identities=4% Similarity=-0.006 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeehh
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQ 68 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~~ 68 (82)
...+++++.+.+...+..+.+..+. ... -|..|-+++.|.=-+-+|..
T Consensus 44 ~e~dp~~~~~~~~~~i~~~~~~~~~--~~~-----~I~~Igis~~~~~~v~~D~~ 91 (510)
T 2p3r_A 44 VEHDPMEIWATQSSTLVEVLAKADI--SSD-----QIAAIGITNQRETTIVWEKE 91 (510)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHTTC--CGG-----GEEEEEEEECSSCBEEEETT
T ss_pred EEECHHHHHHHHHHHHHHHHHHcCC--Chh-----heEEEEEeCCcCcEEEEECC
Confidence 4567999999999888888765332 222 59999999876444566653
No 64
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=20.78 E-value=54 Score=25.61 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.2
Q ss_pred eeeeeecCCCCHHHHHHHHHHHHHHHHhhCCC
Q 034832 7 VHVGLGKVSLKEELLRENVGAFVNALLLAKPA 38 (82)
Q Consensus 7 Ih~~IGk~sF~~e~L~eNi~avl~aI~~~kp~ 38 (82)
+++++.+++....++..|+..+++.|+++..+
T Consensus 7 mKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~ 38 (565)
T 4f4h_A 7 TRIALAQLNVTVGDFAGNVAKIVAAAQAAHDA 38 (565)
T ss_dssp EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCcccHHHHHHHHHHHHHHHHHC
Confidence 56777777777789999999999999987543
No 65
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=20.75 E-value=1.7e+02 Score=21.94 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
...+++++.+.+...+..+.+..+ . -|..|-+|+.|.=-+-+|-
T Consensus 45 ~e~dp~~~~~~~~~~i~~~~~~~~-----~-----~I~~Igis~q~~~~v~~D~ 88 (504)
T 3ll3_A 45 AEEDPKLIFDAVQEIIFDLTQKID-----G-----KIAAISWSSQMHSLIGLGS 88 (504)
T ss_dssp CEECHHHHHHHHHHHHHHHHHTCS-----S-----EEEEEEEEECSSCBEEECT
T ss_pred EEECHHHHHHHHHHHHHHHHHhCC-----C-----CeEEEEEECCCCcEEEECC
Confidence 456799999999888888875532 2 5999999998766566764
No 66
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=20.65 E-value=49 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=26.5
Q ss_pred Ccceeeeeeec---------CCCCHHHHHHHHHHHHHHHHh
Q 034832 3 NTSNVHVGLGK---------VSLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 3 k~G~Ih~~IGk---------~sF~~e~L~eNi~avl~aI~~ 34 (82)
+.|.||+|-=. -+|+.|++.+-++++++++.+
T Consensus 163 ~~gFIHVP~~~eq~~~~~~~psm~~~~~~~al~~~i~~~~~ 203 (215)
T 3giu_A 163 RFGFIHVPYIPEQVIGKPDTPSMPLEKIVAGLTAAIEAISN 203 (215)
T ss_dssp EEEEEEECCCGGGGTTCTTCCCCCHHHHHHHHHHHHHTCCS
T ss_pred eEEEEEeCCCHHHhccCCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 56889998752 479999999999999888766
No 67
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=20.64 E-value=1.8e+02 Score=22.01 Aligned_cols=47 Identities=9% Similarity=0.024 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEeeh
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSI 67 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id~ 67 (82)
...+++++.+.+...+..+.+... .... .|..|-+++.|.=-+.+|.
T Consensus 67 ~e~dp~~~~~~i~~~i~~~~~~~~--~~~~-----~I~~Igis~~g~~~v~~D~ 113 (520)
T 4e1j_A 67 VEHDPEEIWQTVVSTVKEAIEKSG--ITAN-----DIAAIGITNQRETVVVWDR 113 (520)
T ss_dssp CEECHHHHHHHHHHHHHHHHHTTT--CCGG-----GEEEEEEEECSSCEEEEET
T ss_pred EEECHHHHHHHHHHHHHHHHHhcC--CCcc-----cEEEEEEeCCcceEEEEEC
Confidence 456889999999888888765432 1222 5999999998744456673
No 68
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=20.43 E-value=1.1e+02 Score=23.40 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=32.5
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCCceEee
Q 034832 12 GKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 66 (82)
Q Consensus 12 Gk~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGPgi~id 66 (82)
|-...+++++.+.+...+..+.+..+. ... .|..|-+|+++| -+-+|
T Consensus 44 g~~eqdp~~~~~~~~~~i~~~~~~~~~--~~~-----~I~~Igis~~~~-~v~~D 90 (554)
T 3l0q_A 44 DFVEQSSENIWQAVCNAVRDAVNQADI--NPI-----QVKGLGFDATCS-LVVLD 90 (554)
T ss_dssp TEEEECHHHHHHHHHHHHHHHHHHHTC--CGG-----GEEEEEEEECSC-EEEEE
T ss_pred CccccCHHHHHHHHHHHHHHHHHHcCC--CHh-----HEEEEEEcCCCc-eEEEC
Confidence 334578999999998888888754321 222 599999999754 34455
No 69
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=20.32 E-value=80 Score=18.70 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHh
Q 034832 13 KVSLKEELLRENVGAFVNALLL 34 (82)
Q Consensus 13 k~sF~~e~L~eNi~avl~aI~~ 34 (82)
....+.+++.+|=.++++.|.-
T Consensus 40 ~sGIs~~e~~~np~~v~dvl~f 61 (80)
T 1f3m_A 40 TSNITKSEQKKNPQAVLDVLEF 61 (80)
T ss_dssp TSCCCHHHHHHCHHHHHHHHHH
T ss_pred HcCCCHHHHHHCHHHHHHHHHH
Confidence 4678899999999999999985
No 70
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=20.06 E-value=1.6e+02 Score=18.00 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccceEEEecCCCC
Q 034832 14 VSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGP 61 (82)
Q Consensus 14 ~sF~~e~L~eNi~avl~aI~~~kp~~~Kg~~~~~~~I~~v~lsSTMGP 61 (82)
-+-++++..+++..+.+.+...+. ... +|+++.+....+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~l~~L~~-~IP-------~i~~~~vG~~~s~ 70 (118)
T 3fmb_A 31 DDVPVEEKLVVMNSFKEAIEALPA-KIS-------VIRKIEVGLNMNP 70 (118)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTGGG-TCT-------TCSEEEEEECCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhc-cCC-------CeEEEEEeccCCC
Confidence 456789999999888888775532 122 6778888777666
Done!