RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 034832
         (82 letters)



>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score = 60.8 bits (147), Expect = 1e-13
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 1   MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
            D T  +H  +GK     E L +N+ AF+ AL   KP G K T     ++ S ++ +TMG
Sbjct: 161 NDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTTMG 215

Query: 61  PSFPVSIQS 69
           PS  ++  S
Sbjct: 216 PSVRINPHS 224


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 52.8 bits (126), Expect = 1e-10
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 1   MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
             +     V +G   + +E + +N+ A +N +      GL        ++   ++  TMG
Sbjct: 154 TRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLY-------HIKDAYVKLTMG 206

Query: 61  PSFPV 65
           P+  V
Sbjct: 207 PAVKV 211


>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 217

 Score = 52.0 bits (124), Expect = 2e-10
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 1   MDNTSNVHVGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMG 60
             +   V V +G   +K E L EN  A +NA        ++  +K    + + ++ +TMG
Sbjct: 159 TKDQPQVQVFIGTEDMKPEDLAENAIAVLNA--------IENKAKVETNLRNIYVKTTMG 210

Query: 61  PSFPV 65
            +  V
Sbjct: 211 KAVKV 215


>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
          (G) domain {Thermus thermophilus [TaxId: 274]}
          Length = 276

 Score = 23.1 bits (49), Expect = 5.0
 Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 4/29 (13%)

Query: 1  MDNTSNV----HVGLGKVSLKEELLRENV 25
          +    N+    H+  GK +  E +L    
Sbjct: 3  LKRLRNIGIAAHIDAGKTTTTERILYYTG 31


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
          [TaxId: 562]}
          Length = 193

 Score = 22.6 bits (48), Expect = 8.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 9  VGLGKVSLKEELLRENVGA-FVNALLLAKPAGLKKTSKFAGYVNSFHMC 56
          VGL     +    R N GA FV+ L     A L++ +KF GY +   + 
Sbjct: 6  VGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLG 54


>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 562

 Score = 22.5 bits (48), Expect = 9.0
 Identities = 2/16 (12%), Positives = 5/16 (31%)

Query: 18  EELLRENVGAFVNALL 33
            EL  +      + + 
Sbjct: 229 PELGGQAQAELNHLMR 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,994
Number of extensions: 9175
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)