Query 034833
Match_columns 82
No_of_seqs 9 out of 11
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 11:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bku_A Calcitonin; hormone, ca 52.1 16 0.00055 20.1 3.0 22 31-52 9-30 (33)
2 2jxz_A Calcitonin; A-helix, am 43.6 15 0.00052 20.1 2.0 22 31-52 9-30 (33)
3 2jdj_A HAPK, REDY-like protein 38.0 4.4 0.00015 27.1 -0.9 48 20-67 8-64 (105)
4 3let_A Adenosine monophosphate 31.5 22 0.00075 28.0 1.9 35 19-53 252-286 (314)
5 2wh6_B BCL-2-like protein 11; 28.8 24 0.00083 18.9 1.3 10 32-41 6-15 (26)
6 3kj0_B BCL-2-like protein 11; 28.5 25 0.00084 19.0 1.3 11 32-42 8-18 (27)
7 1pq1_B BCL2-like protein 11; B 25.8 29 0.00099 19.5 1.3 9 33-41 7-15 (33)
8 1uv7_A General secretion pathw 23.5 30 0.001 22.1 1.2 24 28-52 60-83 (110)
9 3kxy_T EXSE; type-three secret 20.4 37 0.0013 21.3 1.1 11 29-39 28-38 (66)
10 3efg_A Protein SLYX homolog; x 19.6 34 0.0012 21.0 0.8 28 31-58 51-78 (78)
No 1
>1bku_A Calcitonin; hormone, calcium-regulating hormone; NMR {Anguilla japonica} SCOP: j.6.1.1 PDB: 1byv_A* 1bzb_A* 2glh_A 1fb9_A* 2glg_A
Probab=52.12 E-value=16 Score=20.07 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHHHHhhhHhhccccCCCcCC
Q 034833 31 VRWLVRDVEMIHRFTPINPHAV 52 (82)
Q Consensus 31 vrwlarDlerih~f~pkn~~aV 52 (82)
..+|+++|.|.|-|-|-|--+-
T Consensus 9 t~~la~~L~rs~~f~pT~vG~~ 30 (33)
T 1bku_A 9 LGKLSQELHKLQTYPRTDVGAG 30 (33)
T ss_dssp HHHHHHHHHHHTTCSSSSCSCS
T ss_pred HHHHHHHHHhccccCCCCcCCC
Confidence 5688999999999999987553
No 2
>2jxz_A Calcitonin; A-helix, amidation, cleavage on PAIR of basic residues, HORM secreted; NMR {Synthetic}
Probab=43.59 E-value=15 Score=20.15 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHHHhhhHhhccccCCCcCC
Q 034833 31 VRWLVRDVEMIHRFTPINPHAV 52 (82)
Q Consensus 31 vrwlarDlerih~f~pkn~~aV 52 (82)
..+|+++|.|.|-|-|-|--+-
T Consensus 9 t~~la~~L~rs~~f~pT~vG~~ 30 (33)
T 2jxz_A 9 LGTLTQDFHKFHTFPQTNTGVG 30 (33)
T ss_dssp HHHHHHHHHHHHHCSSGGGCTT
T ss_pred HHHHHHHHHhccccCCCCcCCC
Confidence 5688999999999999886553
No 3
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=37.99 E-value=4.4 Score=27.06 Aligned_cols=48 Identities=21% Similarity=0.475 Sum_probs=33.1
Q ss_pred hhccCCchH-HHHHHH-------HHhhhHhhccccC-CCcCCCCCchhhhhhhhccc
Q 034833 20 LKVVPPLDR-AYVRWL-------VRDVEMIHRFTPI-NPHAVKPPDHYIEHMRLYGR 67 (82)
Q Consensus 20 lkivPplD~-~yvrwl-------arDlerih~f~pk-n~~aV~PpDhYiE~MRL~Gw 67 (82)
+++-|-.|+ +|-+|- ++.|.....|.+. ....=+||=||+|.|..+.|
T Consensus 8 i~L~~g~d~~aFe~w~~evD~P~~~~LpsVrsF~V~R~~~~g~~py~yiEvi~v~s~ 64 (105)
T 2jdj_A 8 IRLFDVAQADAFEFWVQNVDYATCPDLPSVVRFDVHRASLQANAPYHYVEVIKITDR 64 (105)
T ss_dssp EEESCGGGHHHHHHHHHHTHHHHGGGCTTEEEEEEEECCCCTTCSCSEEEEEEESCH
T ss_pred EecCCCCCHHHHHHHHHhchhhhccCCCcceeEEEEecccCCCCCeeEEEEEecCCH
Confidence 455566665 688884 4556667788775 33335789999999977654
No 4
>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC domain, type III, effector, T3SS, nucleotidyltransferase, virulence; 1.80A {Vibrio parahaemolyticus}
Probab=31.51 E-value=22 Score=27.98 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=28.9
Q ss_pred hhhccCCchHHHHHHHHHhhhHhhccccCCCcCCC
Q 034833 19 CLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVK 53 (82)
Q Consensus 19 llkivPplD~~yvrwlarDlerih~f~pkn~~aV~ 53 (82)
+.+.-|--|.-+..||-.++.+||+|.-.|-|--|
T Consensus 252 l~~~~Pv~p~elaa~lh~~fv~IHPF~DGNGRtgR 286 (314)
T 3let_A 252 FLKENPVADKDLGKHLFAGVIGYHGFTDGNGRMGR 286 (314)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTCSSSCHHHHHH
T ss_pred HhccCCccHHHHHHHHHHHhheeCCccCCCcHHHH
Confidence 46777766778899999999999999999977543
No 5
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=28.84 E-value=24 Score=18.92 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=8.6
Q ss_pred HHHHHhhhHh
Q 034833 32 RWLVRDVEMI 41 (82)
Q Consensus 32 rwlarDleri 41 (82)
-|+||.|.||
T Consensus 6 ~~iAqELRRI 15 (26)
T 2wh6_B 6 IWIAQELRRI 15 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3999999987
No 6
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=28.50 E-value=25 Score=19.03 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.0
Q ss_pred HHHHHhhhHhh
Q 034833 32 RWLVRDVEMIH 42 (82)
Q Consensus 32 rwlarDlerih 42 (82)
-|+||.|.||-
T Consensus 8 ~wiAqELRRIG 18 (27)
T 3kj0_B 8 IWYAQELRRIG 18 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 39999999883
No 7
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=25.76 E-value=29 Score=19.49 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=8.3
Q ss_pred HHHHhhhHh
Q 034833 33 WLVRDVEMI 41 (82)
Q Consensus 33 wlarDleri 41 (82)
|+|+.|.||
T Consensus 7 wIAQELRRI 15 (33)
T 1pq1_B 7 RIAQELRRI 15 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 8
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} SCOP: d.67.4.1
Probab=23.51 E-value=30 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhHhhccccCCCcCC
Q 034833 28 RAYVRWLVRDVEMIHRFTPINPHAV 52 (82)
Q Consensus 28 ~~yvrwlarDlerih~f~pkn~~aV 52 (82)
.+++.||. +|+.=||-.+.+....
T Consensus 60 ~~L~~WL~-~L~~~~Gv~v~~l~l~ 83 (110)
T 1uv7_A 60 SQLVSWIA-YLQERQGVSVDAIDID 83 (110)
T ss_dssp HHHHHHHH-HHHHHSCCEEEEEEEE
T ss_pred HHHHHHHH-HHHHhcCceEEEEEEe
Confidence 57899999 9999999988765543
No 9
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=20.43 E-value=37 Score=21.31 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=8.7
Q ss_pred HHHHHHHHhhh
Q 034833 29 AYVRWLVRDVE 39 (82)
Q Consensus 29 ~yvrwlarDle 39 (82)
-+.|||||.+.
T Consensus 28 glarwlarnva 38 (66)
T 3kxy_T 28 GLARWLARNVA 38 (66)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 46899999864
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=19.62 E-value=34 Score=21.01 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=3.9
Q ss_pred HHHHHHhhhHhhccccCCCcCCCCCchh
Q 034833 31 VRWLVRDVEMIHRFTPINPHAVKPPDHY 58 (82)
Q Consensus 31 vrwlarDlerih~f~pkn~~aV~PpDhY 58 (82)
+++|..-++..-+=...++..-+||-||
T Consensus 51 l~~L~~rl~~~~~~~~~~~~~e~~PPHY 78 (78)
T 3efg_A 51 IRHLLEDLGKVRSTLFADAADEPPPPHY 78 (78)
T ss_dssp HHHHHHTC--------------------
T ss_pred HHHHHHHHHHhhhccCCCCCCCCCccCC
Confidence 4555544432221111244455688898
Done!