Query 034833
Match_columns 82
No_of_seqs 9 out of 11
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 11:04:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1riia_ c.60.1.1 (A:) Phosphog 31.4 4.1 0.0003 25.5 -0.3 12 63-74 21-32 (243)
2 d1xrsb1 c.23.6.1 (B:102-261) D 28.7 5.5 0.0004 25.2 -0.0 29 38-66 51-79 (160)
3 d2hhja1 c.60.1.1 (A:3-250) Pho 28.3 4.8 0.00035 24.9 -0.4 12 63-74 19-30 (248)
4 d1uv7a_ d.67.4.1 (A:) General 24.5 13 0.00097 21.3 1.2 21 28-49 38-58 (80)
5 d2g03a1 a.265.1.1 (A:11-187) H 21.3 22 0.0016 22.1 1.9 45 6-52 63-107 (177)
6 d1toaa_ c.92.2.2 (A:) Periplas 21.0 27 0.002 22.0 2.3 47 19-65 213-267 (277)
7 d1tafb_ a.22.1.3 (B:) TAF(II)6 20.9 33 0.0024 19.9 2.5 21 24-44 22-43 (70)
8 d1yqfa1 d.25.1.1 (A:14-195) Hy 20.2 25 0.0018 22.0 2.0 12 28-40 168-179 (182)
9 d1uwva2 c.66.1.40 (A:75-432) r 19.6 8.7 0.00063 25.1 -0.5 20 33-52 319-340 (358)
10 d5csma_ a.130.1.2 (A:) Alloste 17.7 29 0.0021 24.7 2.0 40 23-62 52-104 (256)
No 1
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.44 E-value=4.1 Score=25.47 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=10.1
Q ss_pred hhccceeccCCC
Q 034833 63 RLYGRLDVDLDD 74 (82)
Q Consensus 63 RL~GwLDvdLdD 74 (82)
|.+||.|+.|.+
T Consensus 21 r~qG~~D~~LTe 32 (243)
T d1riia_ 21 LFTGWVDVGLTD 32 (243)
T ss_dssp BCCTTCCCCBCH
T ss_pred CeeCCCCCCcCH
Confidence 679999998865
No 2
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=28.70 E-value=5.5 Score=25.21 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=24.1
Q ss_pred hhHhhccccCCCcCCCCCchhhhhhhhcc
Q 034833 38 VEMIHRFTPINPHAVKPPDHYIEHMRLYG 66 (82)
Q Consensus 38 lerih~f~pkn~~aV~PpDhYiE~MRL~G 66 (82)
+|++++|.+.+--+-.||+.+++..+.++
T Consensus 51 ~~~~~~~eVi~LG~~vp~e~~v~~a~e~~ 79 (160)
T d1xrsb1 51 LERYEMIDAYNLGSQVANEDFIKKAVELE 79 (160)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHHTT
T ss_pred cccccceEEEeCCCCCCHHHHHHHHHhcC
Confidence 45777799999999999999999877653
No 3
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.26 E-value=4.8 Score=24.90 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=9.6
Q ss_pred hhccceeccCCC
Q 034833 63 RLYGRLDVDLDD 74 (82)
Q Consensus 63 RL~GwLDvdLdD 74 (82)
|.+||.|++|.+
T Consensus 19 r~~G~~D~~LTe 30 (248)
T d2hhja1 19 RFCSWVDQKLNS 30 (248)
T ss_dssp BCCTTSCCCBCH
T ss_pred CccCCCCCccCH
Confidence 578999988764
No 4
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=24.49 E-value=13 Score=21.30 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhHhhccccCCC
Q 034833 28 RAYVRWLVRDVEMIHRFTPINP 49 (82)
Q Consensus 28 ~~yvrwlarDlerih~f~pkn~ 49 (82)
.++++||. +|+.-||..+.+.
T Consensus 38 ~~ll~WL~-~L~~~~Gi~v~~l 58 (80)
T d1uv7a_ 38 SQLVSWIA-YLQERQGVSVDAI 58 (80)
T ss_dssp HHHHHHHH-HHHHHSCCEEEEE
T ss_pred HHHHHHHH-HHHhcCCeEEEEE
Confidence 46899999 9999999877643
No 5
>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004 {Neisseria meningitidis [TaxId: 487]}
Probab=21.29 E-value=22 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=27.6
Q ss_pred CCccchhhhhhhhhhhccCCchHHHHHHHHHhhhHhhccccCCCcCC
Q 034833 6 AVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAV 52 (82)
Q Consensus 6 ~~~~~vkeer~eillkivPplD~~yvrwlarDlerih~f~pkn~~aV 52 (82)
+.|..+++.=+.+.-..-.+++++-.-+ -.++.||+|.-.|-|..
T Consensus 63 ~~p~~i~~~l~~~~~~~~~~~~~aa~~h--~~f~~IHPF~DGNGRt~ 107 (177)
T d2g03a1 63 ANAMYLKEALVKIEQMPERTFEEIIAKY--VEMNIAHPFLEGNGRST 107 (177)
T ss_dssp CCGGGHHHHHHHHHHSCCSSHHHHHHHH--HHHHHHCCSSSCHHHHH
T ss_pred CChHHHHHHHHHHHhchhhhHHHHHHHH--HHHhhccCccCCcHHHH
Confidence 3444455444444444556777665433 35889999999887643
No 6
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=21.00 E-value=27 Score=22.00 Aligned_cols=47 Identities=13% Similarity=0.016 Sum_probs=30.5
Q ss_pred hhhccCCchHHHHHHHHHhhh-HhhccccC---C----CcCCCCCchhhhhhhhc
Q 034833 19 CLKVVPPLDRAYVRWLVRDVE-MIHRFTPI---N----PHAVKPPDHYIEHMRLY 65 (82)
Q Consensus 19 llkivPplD~~yvrwlarDle-rih~f~pk---n----~~aV~PpDhYiE~MRL~ 65 (82)
++-+-|-.....+++|++.+. +..-+.+- . .....+.+.|++.|+-|
T Consensus 213 ~if~e~~~~~~~~~~ia~~~~~k~~~~~~~~~l~~d~l~~~~~~~~tY~~~m~~N 267 (277)
T d1toaa_ 213 AIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHN 267 (277)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTTTCCCEEEEEECSSSCCCTTSGGGSHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHHHHhCCCceeeccCCccccccccCCCCCcccHHHHHHHH
Confidence 355667788899999998876 54443321 1 11223446799999876
No 7
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.85 E-value=33 Score=19.91 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCchHHHHHHHHHhhh-Hhhcc
Q 034833 24 PPLDRAYVRWLVRDVE-MIHRF 44 (82)
Q Consensus 24 PplD~~yvrwlarDle-rih~f 44 (82)
..|...-.+-||.|+| |++-.
T Consensus 22 ~~l~de~a~~LA~DveYRl~ei 43 (70)
T d1tafb_ 22 GSLSDDAAKELAEDVSIKLKRI 43 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4566777899999999 88743
No 8
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=20.20 E-value=25 Score=21.97 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhhH
Q 034833 28 RAYVRWLVRDVEM 40 (82)
Q Consensus 28 ~~yvrwlarDler 40 (82)
+.|++||. +|+.
T Consensus 168 ~eYi~WL~-~l~~ 179 (182)
T d1yqfa1 168 QDYEAWLT-TMNK 179 (182)
T ss_dssp HHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHH
Confidence 46888887 5553
No 9
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=19.61 E-value=8.7 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHhhhHh--hccccCCCcCC
Q 034833 33 WLVRDVEMI--HRFTPINPHAV 52 (82)
Q Consensus 33 wlarDleri--h~f~pkn~~aV 52 (82)
=||||++.+ .||+.+...++
T Consensus 319 TlaRDl~~l~~~gy~l~~i~~~ 340 (358)
T d1uwva2 319 TLARDSEALLKAGYTIARLAML 340 (358)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEeEEEEE
Confidence 378999987 78987766554
No 10
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.73 E-value=29 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.558 Sum_probs=31.6
Q ss_pred cCCchHHHHHHHHHhhhHhhc------------cccC-CCcCCCCCchhhhhh
Q 034833 23 VPPLDRAYVRWLVRDVEMIHR------------FTPI-NPHAVKPPDHYIEHM 62 (82)
Q Consensus 23 vPplD~~yvrwlarDlerih~------------f~pk-n~~aV~PpDhYiE~M 62 (82)
+|-.+-.++.|+.|-.|++|+ |.|. =+.++-||-+|=..+
T Consensus 52 ~~~~~~S~le~~l~etE~lhakvrRY~sPDE~PFfP~~Lp~pilpp~~yp~vL 104 (256)
T d5csma_ 52 IPNFKGSFLDWALSNLEIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQIL 104 (256)
T ss_dssp CTTCCSCHHHHHHHHHHHHHHHTTGGGSTTCCCSCTTTCCCCSSCCCCCCCCS
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcccCCCccCCCCcccccccCCCCCCCCccc
Confidence 356677899999999999974 8888 467788888876554
Done!