BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034834
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54GN2|KTHY_DICDI Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1
Length = 222
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 13 MITQFISSLVRIAGRRVM----ETKWKATKR-----KAGTTLIVDCYFYSGVVFASAKGI 63
+I Q++ + + R + +W+A GT ++VD Y YSGV +++AKGI
Sbjct: 66 IINQYLQNATNMDDRALHLLFSSNRWEARDSILELLNNGTNIVVDRYSYSGVAYSAAKGI 125
Query: 64 DVEWCKA 70
D +WC A
Sbjct: 126 DFDWCYA 132
>sp|Q91FS1|KTHY_IIV6 Putative thymidylate kinase 251L OS=Invertebrate iridescent virus 6
GN=IIV6-251L PE=3 SV=1
Length = 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 42 GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
G T+I+D Y YSG+ F+ AKG+D +WCK
Sbjct: 98 GITVIIDRYSYSGIAFSVAKGLDFQWCKQ 126
>sp|P36590|KTHY_SCHPO Thymidylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tmp1 PE=2 SV=2
Length = 210
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 42 GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
G T I+D Y +SG+ F++AKG+D EWCK+
Sbjct: 91 GVTCILDRYAFSGIAFSAAKGLDWEWCKS 119
>sp|P00572|KTHY_YEAST Thymidylate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=CDC8 PE=1 SV=2
Length = 216
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 41 AGTTLIVDCYFYSGVVFASAK---GIDVEWC 68
G +++D Y YSGV +++AK G+D++WC
Sbjct: 86 EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWC 116
>sp|P23919|KTHY_HUMAN Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4
Length = 212
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 38 KRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCK 69
K G TL+VD Y +SGV F AK ++WCK
Sbjct: 86 KLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCK 118
>sp|Q5JH21|KTHY_PYRKO Probable thymidylate kinase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=tmk PE=3 SV=1
Length = 205
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWC 68
+AG +I D YFYS + + A+G+D+EW
Sbjct: 90 EAGKVVISDRYFYSSLAYQWARGLDLEWL 118
>sp|P97930|KTHY_MOUSE Thymidylate kinase OS=Mus musculus GN=Dtymk PE=2 SV=2
Length = 212
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 38 KRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCK 69
K G TL++D Y +SGV F AK ++WCK
Sbjct: 86 KLNQGVTLVLDRYAFSGVAFTGAKENFSLDWCK 118
>sp|B6YSZ4|KTHY_THEON Probable thymidylate kinase OS=Thermococcus onnurineus (strain NA1)
GN=tmk PE=3 SV=1
Length = 205
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWC 68
K G +I D YFYS + + A+G+D+EW
Sbjct: 90 KTGKIVISDRYFYSSLAYQWARGLDLEWL 118
>sp|Q8JL72|KTHY_ECTVM Thymidylate kinase OS=Ectromelia virus (strain Moscow) GN=TMK PE=3
SV=2
Length = 204
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAA 74
+ G TLIVD Y +SGV +A+AKG + K++ +
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGAPMTLSKSYESG 118
>sp|P33803|KTHY_VAR67 Thymidylate kinase OS=Variola virus (isolate Human/India/Ind3/1967)
GN=TMK PE=3 SV=1
Length = 205
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAA 74
+ G TLIVD Y +SGV +A+AKG + K++ +
Sbjct: 84 EQGITLIVDRYAFSGVAYATAKGASMTLSKSYESG 118
>sp|C6A0S1|KTHY_THESM Probable thymidylate kinase OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=tmk PE=3 SV=1
Length = 210
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWC 68
KAG +I D YFYS + + A+G+D+ W
Sbjct: 92 KAGKVVISDRYFYSSLAYQWARGLDLNWL 120
>sp|Q80HT9|KTHY_VACCW Thymidylate kinase OS=Vaccinia virus (strain Western Reserve)
GN=TMK PE=3 SV=2
Length = 204
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|Q77TG7|KTHY_VACCT Thymidylate kinase OS=Vaccinia virus (strain Tian Tan) GN=TMK PE=3
SV=1
Length = 204
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|P68693|KTHY_VACCC Thymidylate kinase OS=Vaccinia virus (strain Copenhagen) GN=TMK
PE=1 SV=1
Length = 204
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|Q76RA8|KTHY_VACCA Thymidylate kinase OS=Vaccinia virus (strain Ankara) GN=TMK PE=3
SV=1
Length = 204
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|Q6RZD4|KTHY_RABPU Thymidylate kinase OS=Rabbitpox virus (strain Utrecht) GN=TMK PE=3
SV=1
Length = 204
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAA 74
+ G TLIVD Y +SGV +A+AKG + K++ +
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESG 118
>sp|Q8QMQ7|KTHY_CWPXB Thymidylate kinase OS=Cowpox virus (strain Brighton Red) GN=TMK
PE=3 SV=2
Length = 204
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|Q80DS7|KTHY_CWPXG Thymidylate kinase OS=Cowpox virus (strain GRI-90 / Grishak) GN=TMK
PE=3 SV=2
Length = 204
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAA 74
+ G TLIVD Y +SGV +A+AKG + K++ +
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESG 118
>sp|Q8QQ21|KTHY_CAMPS Thymidylate kinase OS=Camelpox virus (strain CMS) GN=TMK PE=3 SV=1
Length = 204
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|Q8V2K9|KTHY_CAMPM Thymidylate kinase OS=Camelpox virus (strain M-96) GN=TMK PE=3 SV=2
Length = 204
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAH 71
+ G TLIVD Y +SGV +A+AKG + K++
Sbjct: 84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSY 115
>sp|Q9UXG7|KTHY1_SULSO Probable thymidylate kinase 1 OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tmk1 PE=3
SV=1
Length = 189
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 25 AGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCK 69
A R + W +K K +I+D Y++S + + A G+D +W K
Sbjct: 65 AADREIHVNW-LSKIKDADLIILDRYYFSSIAYQGALGVDEQWIK 108
>sp|C5A1K2|KTHY_THEGJ Probable thymidylate kinase OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=tmk PE=3 SV=1
Length = 208
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWC 68
++G +I D YFYS + + A+G+D++W
Sbjct: 92 ESGKVVISDRYFYSSLAYQWARGLDLQWL 120
>sp|Q8U071|KTHY_PYRFU Probable thymidylate kinase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=tmk PE=3 SV=1
Length = 210
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWC 68
+ G +I D YFYS + + A+G+++EW
Sbjct: 91 REGKVVISDRYFYSSLAYQWARGLNLEWL 119
>sp|Q22018|KTHY_CAEEL Probable thymidylate kinase OS=Caenorhabditis elegans GN=R53.2 PE=3
SV=1
Length = 218
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 42 GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
G +I D Y YSGV ++ AKG+ +W ++
Sbjct: 101 GIDVICDRYCYSGVAYSLAKGLPEQWVRS 129
>sp|O59366|KTHY_PYRHO Probable thymidylate kinase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=tmk PE=3 SV=1
Length = 205
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 42 GTTLIVDCYFYSGVVFASAKGIDVEWC 68
G +I D YFYS + + A+G+D+ W
Sbjct: 92 GKVVICDRYFYSSLAYQWARGLDLNWL 118
>sp|Q970Q8|KTHY2_SULTO Probable thymidylate kinase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=tmk PE=1 SV=1
Length = 213
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWA 73
K+G +I D Y Y+ S +G+D++W K ++
Sbjct: 84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.133 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,651,838
Number of Sequences: 539616
Number of extensions: 828990
Number of successful extensions: 2091
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 27
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)