Query 034834
Match_columns 82
No_of_seqs 105 out of 550
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4tmk_A Protein (thymidylate ki 99.8 2.9E-20 9.8E-25 132.8 6.9 64 9-80 67-135 (213)
2 3tmk_A Thymidylate kinase; pho 99.8 3.9E-20 1.3E-24 133.1 6.9 71 2-80 49-128 (216)
3 4hlc_A DTMP kinase, thymidylat 99.8 1.1E-19 3.6E-24 128.5 7.0 63 9-79 59-126 (205)
4 4edh_A DTMP kinase, thymidylat 99.8 4.5E-19 1.5E-23 126.2 7.1 64 9-80 66-134 (213)
5 3v9p_A DTMP kinase, thymidylat 99.8 1.2E-18 4E-23 126.1 7.0 71 2-80 75-154 (227)
6 3ld9_A DTMP kinase, thymidylat 99.8 1.7E-18 5.8E-23 125.4 7.4 70 2-79 69-147 (223)
7 3lv8_A DTMP kinase, thymidylat 99.7 1.9E-18 6.6E-23 125.6 6.9 64 9-80 89-157 (236)
8 3hjn_A DTMP kinase, thymidylat 99.7 9.4E-18 3.2E-22 117.5 7.5 63 9-79 57-123 (197)
9 4eaq_A DTMP kinase, thymidylat 99.4 5.2E-14 1.8E-18 99.9 3.2 64 9-80 83-151 (229)
10 2v54_A DTMP kinase, thymidylat 99.3 1E-11 3.5E-16 82.9 7.0 59 16-79 65-123 (204)
11 2z0h_A DTMP kinase, thymidylat 99.2 1.7E-11 5.9E-16 81.2 5.4 63 9-79 57-123 (197)
12 1nn5_A Similar to deoxythymidy 99.0 6.3E-10 2.1E-14 74.5 7.1 59 16-79 72-131 (215)
13 2wwf_A Thymidilate kinase, put 99.0 8.8E-10 3E-14 73.8 6.0 59 16-79 73-132 (212)
14 2plr_A DTMP kinase, probable t 98.9 2.8E-09 9.7E-14 70.8 6.9 59 16-79 64-123 (213)
15 1gtv_A TMK, thymidylate kinase 98.7 1.8E-09 6.1E-14 72.4 0.9 59 16-79 67-134 (214)
16 1p6x_A Thymidine kinase; P-loo 98.6 2.1E-08 7.2E-13 76.6 3.2 55 16-75 84-152 (334)
17 1p5z_B DCK, deoxycytidine kina 98.5 1.5E-09 5E-14 76.7 -5.0 56 15-75 101-169 (263)
18 2vp4_A Deoxynucleoside kinase; 98.4 1.4E-08 4.7E-13 70.8 -1.9 56 18-79 84-148 (230)
19 2pbr_A DTMP kinase, thymidylat 98.4 8.1E-07 2.8E-11 58.1 6.2 52 16-72 61-114 (195)
20 1e2k_A Thymidine kinase; trans 98.3 3.3E-07 1.1E-11 69.9 3.6 36 40-75 109-149 (331)
21 1of1_A Thymidine kinase; trans 98.2 2.8E-07 9.7E-12 71.8 1.6 36 40-75 154-194 (376)
22 1osn_A Thymidine kinase, VZV-T 98.1 4.8E-07 1.6E-11 69.5 -0.2 36 40-75 121-161 (341)
23 2ocp_A DGK, deoxyguanosine kin 98.0 5.8E-08 2E-12 67.5 -5.9 51 20-75 87-144 (241)
24 2jaq_A Deoxyguanosine kinase; 97.3 0.00025 8.5E-09 46.4 4.0 36 16-60 54-89 (205)
25 3czq_A Putative polyphosphate 96.7 0.00099 3.4E-08 50.7 3.4 33 29-65 135-168 (304)
26 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.6E-08 42.3 3.0 40 40-79 53-96 (173)
27 1nks_A Adenylate kinase; therm 96.2 0.0036 1.2E-07 40.3 3.3 44 16-70 68-113 (194)
28 3czp_A Putative polyphosphate 93.3 0.029 9.9E-07 44.9 1.7 41 40-80 99-147 (500)
29 1m7g_A Adenylylsulfate kinase; 91.1 0.36 1.2E-05 32.3 4.8 43 18-73 75-121 (211)
30 3czp_A Putative polyphosphate 88.8 0.13 4.3E-06 41.2 1.1 23 40-62 356-378 (500)
31 3rhf_A Putative polyphosphate 68.7 2.1 7.1E-05 32.4 1.7 40 40-79 131-178 (289)
32 2c95_A Adenylate kinase 1; tra 64.6 15 0.0005 23.3 5.0 19 29-52 80-98 (196)
33 2rhm_A Putative kinase; P-loop 60.0 16 0.00054 23.1 4.5 24 23-51 62-86 (193)
34 1tev_A UMP-CMP kinase; ploop, 56.4 22 0.00074 22.2 4.7 20 40-59 84-103 (196)
35 2yvu_A Probable adenylyl-sulfa 54.7 17 0.00059 23.2 4.0 27 20-51 64-94 (186)
36 1u2m_A Histone-like protein HL 54.2 9 0.00031 24.6 2.6 30 28-60 100-129 (143)
37 2bwj_A Adenylate kinase 5; pho 52.5 13 0.00045 23.6 3.2 21 29-54 83-103 (199)
38 1kht_A Adenylate kinase; phosp 28.5 40 0.0014 20.9 2.5 29 40-69 83-111 (192)
No 1
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.81 E-value=2.9e-20 Score=132.85 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=56.8
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHh---hcCCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHW---AAGSRFGT 80 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d---~gl~r~~~ 80 (82)
+++. +|||+|||++|++ +|+|+| ++|.+||||||.+|++|||++ +|++.+|+.+.+ .|+|+|+-
T Consensus 67 ~~~e---~lL~~A~R~~~~~~~i~paL-----~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl 135 (213)
T 4tmk_A 67 DKAE---VLMFYAARVQLVETVIKPAL-----ANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDL 135 (213)
T ss_dssp HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCE
Confidence 4566 9999999999997 699999 999999999999999999997 799999997655 47889873
No 2
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.81 E-value=3.9e-20 Score=133.07 Aligned_cols=71 Identities=24% Similarity=0.444 Sum_probs=62.5
Q ss_pred hhhhhcc------cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccC---CCHHHHHhHh
Q 034834 2 ISAYFRI------SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKG---IDVEWCKAHW 72 (82)
Q Consensus 2 I~~yL~~------~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akg---l~~~w~~~~d 72 (82)
|.+||.. +++. +|||+|||+++++.|+|+| ++|.+||||||++|++|||+++| .+++|+.+..
T Consensus 49 ir~~l~~~~~~~~~~~~---~llf~a~R~~~~~~I~paL-----~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~ 120 (216)
T 3tmk_A 49 INEYLTDDSFQLSDQAI---HLLFSANRWEIVDKIKKDL-----LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPD 120 (216)
T ss_dssp HHHHHHCTTSCCCHHHH---HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGG
T ss_pred HHHHHHhcccCCCHHHH---HHHHHHHHHHHHHHHHHHH-----HcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHh
Confidence 4556653 4566 9999999999988999999 99999999999999999999875 5799999999
Q ss_pred hcCCCCCC
Q 034834 73 AAGSRFGT 80 (82)
Q Consensus 73 ~gl~r~~~ 80 (82)
.++|+|+-
T Consensus 121 ~~~~~PDl 128 (216)
T 3tmk_A 121 VGLLKPDL 128 (216)
T ss_dssp TTSBCCSE
T ss_pred hCCCCCCE
Confidence 99999973
No 3
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.79 E-value=1.1e-19 Score=128.54 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=57.2
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~ 79 (82)
+++. ++||+|||++|+. .|+|+| ++|.+||||||.+|++|||++ +|++.+|+.+.+. +.++|+
T Consensus 59 ~~~~---~lLf~a~R~~~~~~~i~p~l-----~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD 126 (205)
T 4hlc_A 59 IRTE---AMLFAASRREHLVLKVIPAL-----KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPD 126 (205)
T ss_dssp HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCS
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCC
Confidence 5666 9999999999997 699999 999999999999999999986 8999999988774 778887
No 4
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.77 E-value=4.5e-19 Score=126.17 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=57.4
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFGT 80 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~~ 80 (82)
+++. +|||+|||++|++ .|+|+| ++|.+||||||++|++|||++ +|++.+|+...+. |+|+|+.
T Consensus 66 ~~~~---~llf~a~R~~~~~~~i~p~l-----~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDl 134 (213)
T 4edh_A 66 ADTE---LLLMFAARAQHLAGVIRPAL-----ARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDL 134 (213)
T ss_dssp HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCE
Confidence 4566 9999999999986 699999 999999999999999999997 7999999988874 7899873
No 5
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.75 E-value=1.2e-18 Score=126.14 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=60.9
Q ss_pred hhhhhcc----cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHh---
Q 034834 2 ISAYFRI----SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHW--- 72 (82)
Q Consensus 2 I~~yL~~----~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d--- 72 (82)
|.+++.. +.+. +|||+|||++|++ .|+|+| ++|.+||||||.+|++|||++ +|++.+|+.+.+
T Consensus 75 ir~~l~~~~~~~~~~---~llf~a~R~~~~~~~i~p~l-----~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~ 146 (227)
T 3v9p_A 75 LREILLNQPMDLETE---ALLMFAGRREHLALVIEPAL-----ARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWV 146 (227)
T ss_dssp HHHHHHHSCCCHHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----HcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4455543 4666 9999999999997 699999 999999999999999999987 799999998887
Q ss_pred hcCCCCCC
Q 034834 73 AAGSRFGT 80 (82)
Q Consensus 73 ~gl~r~~~ 80 (82)
.|+|+|+.
T Consensus 147 ~~~~~PDl 154 (227)
T 3v9p_A 147 QGGFQPDL 154 (227)
T ss_dssp HTTCCCSE
T ss_pred hcCCCCCE
Confidence 46799873
No 6
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.75 E-value=1.7e-18 Score=125.43 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=59.0
Q ss_pred hhhhhcc-----cHHHHHHHHhHHHhHHHHHHH-HHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhhc
Q 034834 2 ISAYFRI-----SHTWMITQFISSLVRIAGRRV-METKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWAA 74 (82)
Q Consensus 2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~~-I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~g 74 (82)
|.+||.. +++. +|||+|||++|++. |+|+| ++|.+||||||.+|++|||++ +|++.+|+...+..
T Consensus 69 ir~~l~~~~~~~~~~e---~llf~a~R~~~~~~~I~paL-----~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~ 140 (223)
T 3ld9_A 69 VRNLLFKAQGLDSLSE---LLFFIAMRREHFVKIIKPSL-----MQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDL 140 (223)
T ss_dssp HHHHHHTCSSCCHHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----hcCCeEEEccchhhHHHhccccCCccHHHHHHHHHH
Confidence 4455543 4566 89999999999985 99999 999999999999999999996 79999999888543
Q ss_pred C--CCCC
Q 034834 75 G--SRFG 79 (82)
Q Consensus 75 l--~r~~ 79 (82)
. |+|+
T Consensus 141 ~~~~~PD 147 (223)
T 3ld9_A 141 VIDVYPD 147 (223)
T ss_dssp HCSSCCS
T ss_pred hhcCCCC
Confidence 3 7886
No 7
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.74 E-value=1.9e-18 Score=125.61 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=56.8
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFGT 80 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~~ 80 (82)
+++. +|||+|||++|++ .|+|+| ++|.+||||||++|++|||++ +|++.+|+...+. |+|+|+.
T Consensus 89 ~~~e---~lLf~A~R~~~~~~~I~paL-----~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDl 157 (236)
T 3lv8_A 89 DITE---LLLVYAARVQLVENVIKPAL-----ARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDL 157 (236)
T ss_dssp HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----HcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCE
Confidence 4556 9999999999997 699999 999999999999999999998 7999999976654 7899873
No 8
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.72 E-value=9.4e-18 Score=117.46 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=55.7
Q ss_pred cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHh---HhhcCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKA---HWAAGSRFG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~---~d~gl~r~~ 79 (82)
+++. +|||+|+|+++++.|+|+| ++|.+||||||.+|++|||++ +|++.+|+.. ...+.++|+
T Consensus 57 ~~~~---~ll~~a~r~~~~~~I~~~L-----~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PD 123 (197)
T 3hjn_A 57 PKAE---LFLFLASRNLLVTEIKQYL-----SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPD 123 (197)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHH-----TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCS
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHH-----HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCC
Confidence 5666 9999999999999999999 999999999999999999986 7999999876 345667776
No 9
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.42 E-value=5.2e-14 Score=99.92 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=53.8
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHH---HHHhHhhcCCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVE---WCKAHWAAGSRFGT 80 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~---w~~~~d~gl~r~~~ 80 (82)
+.+. ++||+++|++++. .|+|+| ++|.+||||||++|++|||++ ++++.+ |+.+...+.++|+.
T Consensus 83 ~~~~---~ll~~a~r~~~~~~~i~~~l-----~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~ 151 (229)
T 4eaq_A 83 IRTE---AMLFAASRREHLVLKVIPAL-----KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDL 151 (229)
T ss_dssp HHHH---HHHHHHHHHHHCCCCCHHHH-----HTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSE
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4556 8999999999986 699999 999999999999999999986 788876 45556667777763
No 10
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.27 E-value=1e-11 Score=82.89 Aligned_cols=59 Identities=27% Similarity=0.360 Sum_probs=53.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCCCCC
Q 034834 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~r~~ 79 (82)
+++|+++|+++++.|.+.+ .+|.+||||||.+|++|||.++|++.+|+.......++|+
T Consensus 65 ~~l~~~~r~~~~~~i~~~l-----~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d 123 (204)
T 2v54_A 65 NLLFCANRWEFASFIQEQL-----EQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPD 123 (204)
T ss_dssp HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCS
T ss_pred HHHHHHHHHHHHHHHHHHH-----HCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCC
Confidence 8999999999988899999 8999999999999999999888999999988777666776
No 11
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.20 E-value=1.7e-11 Score=81.16 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=49.7
Q ss_pred cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhH---hhcCCCCC
Q 034834 9 SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAH---WAAGSRFG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~---d~gl~r~~ 79 (82)
+.+. +++|+++|+++.+.|.|++ ++|.+||||||.+|+++||++ ++++.+|+.+. ..++++|+
T Consensus 57 ~~~~---~~~~~~~r~~~~~~i~~~l-----~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 123 (197)
T 2z0h_A 57 PKAE---LFLFLASRNLLVTEIKQYL-----SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPD 123 (197)
T ss_dssp HHHH---HHHHHHHHHHHHHHHTTC---------CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCS
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHH-----hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCC
Confidence 4455 8999999999987799999 999999999999999999986 78998888765 44556665
No 12
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.03 E-value=6.3e-10 Score=74.49 Aligned_cols=59 Identities=31% Similarity=0.519 Sum_probs=52.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCHHHHHhHhhcCCCCC
Q 034834 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCKAHWAAGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~~w~~~~d~gl~r~~ 79 (82)
.++|+++|+++.+.|.+.+ .+|.+||+|||.+|+++|+++. |++.+|+.....++++|+
T Consensus 72 ~~~~~~~r~~~~~~i~~~l-----~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d 131 (215)
T 1nn5_A 72 HLLFSANRWEQVPLIKEKL-----SQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPD 131 (215)
T ss_dssp HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCS
T ss_pred HHHHHHHHHHHHHHHHHHH-----HCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCC
Confidence 7899999999988899999 8999999999999999999876 899999988777766665
No 13
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.98 E-value=8.8e-10 Score=73.85 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=52.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCHHHHHhHhhcCCCCC
Q 034834 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCKAHWAAGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~~w~~~~d~gl~r~~ 79 (82)
.++|+++|+++.+.|.+.+ .+|..||+|||.+|+++||.++ +++.+|+...+.++++|+
T Consensus 73 ~~~~~~~~~~~~~~i~~~l-----~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d 132 (212)
T 2wwf_A 73 HLLFSANRWEHMNEIKSLL-----LKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPD 132 (212)
T ss_dssp HHHHHHHHHTTHHHHHHHH-----HHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCS
T ss_pred HHHHHHHHHHHHHHHHHHH-----hCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCC
Confidence 7899999999988899999 8899999999999999999887 899999987777776665
No 14
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.92 E-value=2.8e-09 Score=70.77 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=52.1
Q ss_pred HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCCCCC
Q 034834 16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~r~~ 79 (82)
.++|+++|+++.. .|.+.+ ++|.+||+|||.+|+++||.++|++.+|+......+++|+
T Consensus 64 ~~~~~~~r~~~~~~~i~~~l-----~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (213)
T 2plr_A 64 SLIHATDFSDRYERYILPML-----KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPD 123 (213)
T ss_dssp HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCC
Confidence 7899999999886 589999 8999999999999999999778999999998877676665
No 15
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.73 E-value=1.8e-09 Score=72.42 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCC------CHHHHHhHh---hcCCCCC
Q 034834 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGI------DVEWCKAHW---AAGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl------~~~w~~~~d---~gl~r~~ 79 (82)
+++|+++|+++.+.|.+.+ ++|.+||||||.+|+++||++++. ..+|+.... .++|.|+
T Consensus 67 ~~~~~~~r~~~~~~i~~~l-----~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 134 (214)
T 1gtv_A 67 ATLFALDRAGAVHTIQGLC-----RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPD 134 (214)
T ss_dssp HHHHHHHHHEEHHHHHHEE-----EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCE
T ss_pred HHHHHHHHhhhHHHHHHHh-----hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCC
Confidence 8899999999966899999 899999999999999999987532 278888765 3555554
No 16
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.59 E-value=2.1e-08 Score=76.64 Aligned_cols=55 Identities=16% Similarity=-0.009 Sum_probs=43.9
Q ss_pred HHhHH---HhHHHHHHH-H-----HHHHHHhhhhCCcEEEEeccCchhHHH-hhc----cCCCHHHHHhHhhcC
Q 034834 16 QFISS---LVRIAGRRV-M-----ETKWKATKRKAGTTLIVDCYFYSGVVF-ASA----KGIDVEWCKAHWAAG 75 (82)
Q Consensus 16 ~LLFs---AdR~e~~~~-I-----~~~L~~~~~~~G~~VI~DRY~~S~~AY-q~a----kgl~~~w~~~~d~gl 75 (82)
+++|+ ++|.+|++. | +|++ ++|.+||||||.+|++|| |.+ +|++.+++.+...-+
T Consensus 84 QLlf~a~la~ra~~~~~~i~~~~~~pal-----~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~ 152 (334)
T 1p6x_A 84 QSRFTTPYLILHDHTCTLFGGNSLQRGT-----QPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATL 152 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEEECCCS-----CCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHhhhccCccc-----cCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHc
Confidence 46787 589999974 5 3899 999999999999999984 433 379998888777643
No 17
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.50 E-value=1.5e-09 Score=76.70 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=43.9
Q ss_pred HHHhHHHhHHH------HHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCC-----HHHHHhHhhcC
Q 034834 15 TQFISSLVRIA------GRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGID-----VEWCKAHWAAG 75 (82)
Q Consensus 15 ~~LLFsAdR~e------~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~-----~~w~~~~d~gl 75 (82)
.++||++.|++ |+. .|+|+| ..|.+||||||.+|+++||++ .+.+ .+|+......+
T Consensus 101 ~~~l~~~~r~~~~~~~~~l~~~i~~~l-----~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~ 169 (263)
T 1p5z_B 101 TYACLSRIRAQLASLNGKLKDAEKPVL-----FFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQF 169 (263)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGSSSCEE-----EEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCce-----EEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Confidence 35668888887 554 578888 899999999999999999986 3443 68887766543
No 18
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.40 E-value=1.4e-08 Score=70.80 Aligned_cols=56 Identities=2% Similarity=-0.051 Sum_probs=44.9
Q ss_pred hHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHh--------hcCCCCC
Q 034834 18 ISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHW--------AAGSRFG 79 (82)
Q Consensus 18 LFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d--------~gl~r~~ 79 (82)
.+..+|.+|+. .|+|.+ ..|..|+||||.+|++|||++ |++.+|+...+ .+.++|+
T Consensus 84 ~l~~~~~~~~~~~i~~~l-----~~~r~v~~dry~~s~~ayq~~-~l~~~~~~~~~~~~~~~~~~~~~~pD 148 (230)
T 2vp4_A 84 VTLTMLQSHTAPTNKKLK-----IMERSIFSARYCFVENMRRNG-SLEQGMYNTLEEWYKFIEESIHVQAD 148 (230)
T ss_dssp HHHHHHHHHHCCCCSSEE-----EEESCHHHHHHTHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHBCCCCS
T ss_pred HHHHHHHHHHhccccCce-----eecCCccccHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHhhcCCCC
Confidence 33457888876 588888 889999999999999999985 89998887666 2567776
No 19
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.38 E-value=8.1e-07 Score=58.07 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=44.5
Q ss_pred HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHh
Q 034834 16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHW 72 (82)
Q Consensus 16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d 72 (82)
.++|.++|.++++ .+.|.+ ++|..||+|||.+|+++|++. ++++.+|+.+..
T Consensus 61 ~~~~~~~~~~~l~~~i~~~l-----~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~ 114 (195)
T 2pbr_A 61 LLLFEASRSKLIEEKIIPDL-----KRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLN 114 (195)
T ss_dssp HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hCCCEEEECcchhHHHHHccccCCCCHHHHHHHH
Confidence 6778899999886 589999 899999999999999999974 788888876644
No 20
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.31 E-value=3.3e-07 Score=69.94 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=30.0
Q ss_pred hCCcEEEEeccCchhH-HHhhc----cCCCHHHHHhHhhcC
Q 034834 40 KAGTTLIVDCYFYSGV-VFASA----KGIDVEWCKAHWAAG 75 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~-AYq~a----kgl~~~w~~~~d~gl 75 (82)
++|.+||||||.+|++ +||++ +|++.+++.....-+
T Consensus 109 ~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~ 149 (331)
T 1e2k_A 109 PPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALI 149 (331)
T ss_dssp CCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred cCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhc
Confidence 6899999999999998 79975 389998887776544
No 21
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.23 E-value=2.8e-07 Score=71.80 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=30.3
Q ss_pred hCCcEEEEeccCchhH-HHhhc----cCCCHHHHHhHhhcC
Q 034834 40 KAGTTLIVDCYFYSGV-VFASA----KGIDVEWCKAHWAAG 75 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~-AYq~a----kgl~~~w~~~~d~gl 75 (82)
+.|.+||||||.+|++ +||++ +|++.+++.....-+
T Consensus 154 ~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~ 194 (376)
T 1of1_A 154 PPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALI 194 (376)
T ss_dssp CCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred cCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhc
Confidence 7899999999999998 79975 389999887776544
No 22
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.06 E-value=4.8e-07 Score=69.48 Aligned_cols=36 Identities=3% Similarity=-0.141 Sum_probs=30.0
Q ss_pred hCCcEEEEeccCchhHHHhhc-----cCCCHHHHHhHhhcC
Q 034834 40 KAGTTLIVDCYFYSGVVFASA-----KGIDVEWCKAHWAAG 75 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~a-----kgl~~~w~~~~d~gl 75 (82)
++|.+||||||.+|+.+||+. +|++.+++.+...-+
T Consensus 121 ~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~ 161 (341)
T 1osn_A 121 EPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTL 161 (341)
T ss_dssp SCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTC
T ss_pred CCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhh
Confidence 889999999999999988764 389888887776644
No 23
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.99 E-value=5.8e-08 Score=67.51 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=37.5
Q ss_pred HHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc--C----CCHHHHHhHhhcC
Q 034834 20 SLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAK--G----IDVEWCKAHWAAG 75 (82)
Q Consensus 20 sAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak--g----l~~~w~~~~d~gl 75 (82)
.++|.+|+. .+.|.+ ..|..||||||.+|+.+||++. + +..+|+...+..+
T Consensus 87 ~~~~~~~~~~~~~~~l-----~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~ 144 (241)
T 2ocp_A 87 LEPFPEKLLQARKPVQ-----IFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEF 144 (241)
T ss_dssp HSCCCHHHHSCSSCEE-----EEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhcccCCceE-----eeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 445555654 367777 7899999999999999999864 2 3567777766544
No 24
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=0.00025 Score=46.43 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=25.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc
Q 034834 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA 60 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a 60 (82)
.++|.++|+++ +++.+ .+|. ||+|||.+|+++|+.+
T Consensus 54 ~~~~~~~r~~~---~~~~~-----~~~~-vi~d~~~~~~~~~~~~ 89 (205)
T 2jaq_A 54 QIYMLTARSKQ---LKQAK-----NLEN-IIFDRTLLEDPIFMKV 89 (205)
T ss_dssp HHHHHHHHHHH---HC-----------C-EEEESCTTTHHHHHHH
T ss_pred HHHHHHHHHHH---HHHhh-----ccCC-EEEEeccchhHHHHHH
Confidence 57888898876 55667 6675 9999999999999975
No 25
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.73 E-value=0.00099 Score=50.73 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCH
Q 034834 29 VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDV 65 (82)
Q Consensus 29 ~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~ 65 (82)
.+.++| -++|.+||||||.||+++||+. ++++.
T Consensus 135 R~~~~L----P~~G~IvIfDRswYs~v~~~rv~g~~~~ 168 (304)
T 3czq_A 135 RYVATF----PTAGEFVLFDRSWYNRAGVEPVMGFCTP 168 (304)
T ss_dssp HHHTTC----CCTTCEEEEEECGGGGTTHHHHHTSSCH
T ss_pred HHHHhc----ccCCeEEEEECCcchHHHHHHHhcCCCH
Confidence 466666 2689999999999999999987 55664
No 26
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.0011 Score=42.28 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=31.4
Q ss_pred hCCcEEEEeccCchhHHHhhc----cCCCHHHHHhHhhcCCCCC
Q 034834 40 KAGTTLIVDCYFYSGVVFASA----KGIDVEWCKAHWAAGSRFG 79 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~a----kgl~~~w~~~~d~gl~r~~ 79 (82)
.+|..||+|||.+|+++||+. ..+...|....+.++++|+
T Consensus 53 ~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (173)
T 3kb2_A 53 ADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKA 96 (173)
T ss_dssp TTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTE
T ss_pred HhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCC
Confidence 778999999999999999853 2356778877777766664
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.23 E-value=0.0036 Score=40.34 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=31.4
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHh-h-ccCCCHHHHHh
Q 034834 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFA-S-AKGIDVEWCKA 70 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq-~-akgl~~~w~~~ 70 (82)
.++|+++| |++.+. +.+|..||+||| |+++|| + ..+++.+|++.
T Consensus 68 ~~~~~~~~------i~~~l~---~~~~~~vi~d~~--~~~~~~~~~~~~~~~~~~~~ 113 (194)
T 1nks_A 68 LQIDAAKG------IAEEAR---AGGEGYLFIDTH--AVIRTPSGYLPGLPSYVITE 113 (194)
T ss_dssp HHHHHHHH------HHHHHH---HTCSSEEEEEEC--SEEEETTEEEESSCHHHHHH
T ss_pred HHHHHHHH------HHHHhh---ccCCCEEEECCc--hhhccccccccCCCHHHHHh
Confidence 56666665 555541 146889999999 888998 3 46888888776
No 28
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.33 E-value=0.029 Score=44.90 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.2
Q ss_pred hCCcEEEEeccCchhHHHhhcc-CCC-------HHHHHhHhhcCCCCCC
Q 034834 40 KAGTTLIVDCYFYSGVVFASAK-GID-------VEWCKAHWAAGSRFGT 80 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~ak-gl~-------~~w~~~~d~gl~r~~~ 80 (82)
.+|.+||+|||.||.++|+... .++ ++|+..-|..|...|+
T Consensus 99 ~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~ 147 (500)
T 3czp_A 99 PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGA 147 (500)
T ss_dssp CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999998864 365 4566666666665554
No 29
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.07 E-value=0.36 Score=32.29 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=29.0
Q ss_pred hHHHhHHHHHHH----HHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhh
Q 034834 18 ISSLVRIAGRRV----METKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWA 73 (82)
Q Consensus 18 LFsAdR~e~~~~----I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~ 73 (82)
++.++|+++... +++.+ ++|.+||+| |. + +||. +.+|+++...
T Consensus 75 ~~~~~r~~~~~~~~~~~~~~l-----~~g~~VI~d-~~-~--~~~~----~~~~l~~l~~ 121 (211)
T 1m7g_A 75 FSEADRNENIRRIAEVAKLFA-----DSNSIAITS-FI-S--PYRK----DRDTARQLHE 121 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH-----HTTCEEEEE-CC-C--CCHH----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-----HCCCEEEEe-cC-C--ccHH----HHHHHHHHhh
Confidence 455899888763 45667 789999999 55 3 6664 2566665443
No 30
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=88.83 E-value=0.13 Score=41.22 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.4
Q ss_pred hCCcEEEEeccCchhHHHhhccC
Q 034834 40 KAGTTLIVDCYFYSGVVFASAKG 62 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~akg 62 (82)
.+|.+||+|||.||.++|+...|
T Consensus 356 ~~G~i~IfDRswY~~~~v~rv~g 378 (500)
T 3czp_A 356 ARRQFTIFDRSWYGRVLVERIEG 378 (500)
T ss_dssp CTTCEEEEESCGGGGGTHHHHHT
T ss_pred CCCeEEEEeCcchhhHHHHHHhc
Confidence 68999999999999999987643
No 31
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=68.72 E-value=2.1 Score=32.44 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=28.7
Q ss_pred hCCcEEEEeccCchhHHHhhccCCC--------HHHHHhHhhcCCCCC
Q 034834 40 KAGTTLIVDCYFYSGVVFASAKGID--------VEWCKAHWAAGSRFG 79 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~akgl~--------~~w~~~~d~gl~r~~ 79 (82)
.+|.++|.||+.|+.+.++...|.. ++++..-|.-|...|
T Consensus 131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G 178 (289)
T 3rhf_A 131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQG 178 (289)
T ss_dssp CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999988765532 444555555544444
No 32
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=64.64 E-value=15 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhhCCcEEEEeccCc
Q 034834 29 VMETKWKATKRKAGTTLIVDCYFY 52 (82)
Q Consensus 29 ~I~~~L~~~~~~~G~~VI~DRY~~ 52 (82)
.|.+.+ ++|..||+|+|..
T Consensus 80 ~i~~~~-----~~~~~vi~d~~~~ 98 (196)
T 2c95_A 80 AMVAKV-----NTSKGFLIDGYPR 98 (196)
T ss_dssp HHHHHT-----TTCSCEEEESCCC
T ss_pred HHHhcc-----ccCCcEEEeCCCC
Confidence 466666 6788999998753
No 33
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=59.95 E-value=16 Score=23.06 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHH-HHHHHHHHhhhhCCcEEEEeccC
Q 034834 23 RIAGRR-VMETKWKATKRKAGTTLIVDCYF 51 (82)
Q Consensus 23 R~e~~~-~I~~~L~~~~~~~G~~VI~DRY~ 51 (82)
+++++. .+++.+ ++|..||+|++.
T Consensus 62 ~~~~~~~~~~~~l-----~~g~~vi~d~~~ 86 (193)
T 2rhm_A 62 AIMMLYHTAATIL-----QSGQSLIMESNF 86 (193)
T ss_dssp HHHHHHHHHHHHH-----HTTCCEEEEECC
T ss_pred HHHHHHHHHHHHH-----hCCCeEEEecCC
Confidence 344443 577788 889999999998
No 34
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=56.41 E-value=22 Score=22.23 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=16.1
Q ss_pred hCCcEEEEeccCchhHHHhh
Q 034834 40 KAGTTLIVDCYFYSGVVFAS 59 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~ 59 (82)
.+|..||+|+|..+...|+.
T Consensus 84 ~~~~~vi~dg~~~~~~~~~~ 103 (196)
T 1tev_A 84 AQKNKFLIDGFPRNQDNLQG 103 (196)
T ss_dssp TTCCEEEEESCCCSHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHH
Confidence 45778999999998887763
No 35
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=54.71 E-value=17 Score=23.18 Aligned_cols=27 Identities=11% Similarity=-0.024 Sum_probs=18.1
Q ss_pred HHhHHHHHHH-HHH---HHHHhhhhCCcEEEEeccC
Q 034834 20 SLVRIAGRRV-MET---KWKATKRKAGTTLIVDCYF 51 (82)
Q Consensus 20 sAdR~e~~~~-I~~---~L~~~~~~~G~~VI~DRY~ 51 (82)
.++|.++... +.. .+ ++|.+||+|++.
T Consensus 64 ~~~r~~~~~~~~~~~~~~~-----~~g~~vi~d~~~ 94 (186)
T 2yvu_A 64 REERLRHLKRIAWIARLLA-----RNGVIVICSFVS 94 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TTTCEEEEECCC
T ss_pred hhhHHHHHHHHHHHHHHHH-----hCCCEEEEeCcc
Confidence 5677776653 222 24 789999999965
No 36
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=54.21 E-value=9 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc
Q 034834 28 RVMETKWKATKRKAGTTLIVDCYFYSGVVFASA 60 (82)
Q Consensus 28 ~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a 60 (82)
+.|.++++.+++++|..+|.|+ +++.|...
T Consensus 100 ~~i~~ai~~vak~~gy~~Vld~---~~vly~~~ 129 (143)
T 1u2m_A 100 TRIQTAVKSVANSQDIDLVVDA---NAVAYNSS 129 (143)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEG---GGEEEECT
T ss_pred HHHHHHHHHHHHHCCCeEEEEC---CceeEeCC
Confidence 3578888999999999999997 57778553
No 37
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=52.50 E-value=13 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhCCcEEEEeccCchh
Q 034834 29 VMETKWKATKRKAGTTLIVDCYFYSG 54 (82)
Q Consensus 29 ~I~~~L~~~~~~~G~~VI~DRY~~S~ 54 (82)
.|.+.+ .+|..||+|+|..+.
T Consensus 83 ~i~~~~-----~~~~~vi~dg~~~~~ 103 (199)
T 2bwj_A 83 AMVASL-----GDTRGFLIDGYPREV 103 (199)
T ss_dssp HHHHHT-----TSCSCEEEETCCSSH
T ss_pred HHhccc-----ccCccEEEeCCCCCH
Confidence 355555 578899999997764
No 38
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=28.48 E-value=40 Score=20.92 Aligned_cols=29 Identities=10% Similarity=-0.104 Sum_probs=12.4
Q ss_pred hCCcEEEEeccCchhHHHhhccCCCHHHHH
Q 034834 40 KAGTTLIVDCYFYSGVVFASAKGIDVEWCK 69 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~akgl~~~w~~ 69 (82)
+.+.+|+.+++..++.+ +...|++..+++
T Consensus 83 ~~~~viid~~~~~~~~~-~~~~~~~~~~~~ 111 (192)
T 1kht_A 83 KESPVAVDTHSTVSTPK-GYLPGLPSWVLN 111 (192)
T ss_dssp TTSCEEEECCSEEEETT-EEEESSCHHHHH
T ss_pred cCCeEEEccceeccccc-cccccCcHHHHh
Confidence 45555554444444332 112344444444
Done!