RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 034834
         (82 letters)



>d1m6ba1 c.10.2.5 (A:8-165) Receptor protein-tyrosine kinase
          Erbb-3 extracellular domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 158

 Score = 24.1 bits (52), Expect = 2.4
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 1  MISAYFRISHTWMITQFISSLVRIAGRRVMETKW 34
           ++ Y  ++     T  + +L  + G +V + K+
Sbjct: 56 EVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKF 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,461
Number of extensions: 11517
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)