Query 034836
Match_columns 82
No_of_seqs 105 out of 550
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3327 Thymidylate kinase/ade 99.9 8.5E-29 1.8E-33 183.9 4.5 72 1-80 51-127 (208)
2 PLN02924 thymidylate kinase 99.8 7.9E-20 1.7E-24 133.4 7.7 71 2-80 63-138 (220)
3 COG0125 Tmk Thymidylate kinase 99.8 5.3E-19 1.2E-23 129.6 7.0 63 9-79 62-129 (208)
4 PRK13976 thymidylate kinase; P 99.8 1.8E-18 3.9E-23 125.3 7.4 70 2-79 48-126 (209)
5 PRK07933 thymidylate kinase; V 99.7 1.1E-17 2.3E-22 120.8 5.7 60 15-79 66-134 (213)
6 PRK13974 thymidylate kinase; P 99.7 1.6E-16 3.4E-21 113.5 7.3 59 16-79 73-136 (212)
7 PRK13973 thymidylate kinase; P 99.7 2.5E-16 5.4E-21 112.6 7.2 63 9-79 63-130 (213)
8 PF02223 Thymidylate_kin: Thym 99.6 2.9E-16 6.3E-21 108.1 4.7 70 2-79 42-120 (186)
9 PRK13975 thymidylate kinase; P 99.4 1E-12 2.2E-17 90.5 7.7 63 9-80 54-116 (196)
10 PRK00698 tmk thymidylate kinas 99.3 9.1E-12 2E-16 85.6 6.6 63 9-79 62-129 (205)
11 TIGR00041 DTMP_kinase thymidyl 99.3 1.8E-11 3.9E-16 84.2 6.8 63 9-79 63-129 (195)
12 cd01672 TMPK Thymidine monopho 98.9 5E-09 1.1E-13 70.5 6.8 60 15-79 63-127 (200)
13 cd02030 NDUO42 NADH:Ubiquinone 98.7 1.2E-08 2.5E-13 73.3 4.5 59 16-79 74-144 (219)
14 cd01673 dNK Deoxyribonucleosid 98.5 6.9E-07 1.5E-11 61.6 7.1 39 16-60 57-96 (193)
15 PHA03132 thymidine kinase; Pro 97.9 6.5E-06 1.4E-10 68.9 3.0 37 17-58 335-375 (580)
16 PF12964 DUF3853: Protein of u 68.5 4.8 0.0001 27.3 2.2 25 21-49 62-86 (96)
17 TIGR03575 selen_PSTK_euk L-ser 67.8 6.2 0.00013 31.3 3.1 35 20-59 109-145 (340)
18 PF13521 AAA_28: AAA domain; P 62.2 15 0.00032 24.5 3.8 21 40-60 71-91 (163)
19 PF01712 dNK: Deoxynucleoside 56.4 17 0.00037 24.6 3.3 36 16-60 2-38 (146)
20 PF03938 OmpH: Outer membrane 49.6 15 0.00033 24.6 2.2 33 29-65 117-149 (158)
21 PRK10780 periplasmic chaperone 43.8 32 0.0007 23.9 3.2 33 29-65 124-156 (165)
22 cd02120 PA_subtilisin_like PA_ 43.4 15 0.00032 23.5 1.3 13 40-52 50-62 (126)
23 PRK12864 YciI-like protein; Re 39.8 57 0.0012 20.6 3.6 29 20-53 19-47 (89)
24 PF06794 UPF0270: Uncharacteri 37.5 45 0.00097 21.2 2.8 19 24-47 36-54 (70)
25 KOG0862 Synaptobrevin/VAMP-lik 35.5 26 0.00057 26.8 1.7 33 43-75 71-103 (216)
26 PRK04966 hypothetical protein; 35.5 49 0.0011 21.2 2.8 19 24-47 36-54 (72)
27 PF08357 SEFIR: SEFIR domain; 32.0 24 0.00051 23.3 0.9 50 16-70 4-54 (150)
28 TIGR03574 selen_PSTK L-seryl-t 29.9 93 0.002 22.4 3.8 21 28-53 59-79 (249)
29 PF08433 KTI12: Chromatin asso 28.5 73 0.0016 24.2 3.2 32 23-59 57-89 (270)
30 COG0673 MviM Predicted dehydro 27.6 61 0.0013 23.7 2.5 27 24-55 78-104 (342)
31 PF04472 DUF552: Protein of un 27.0 65 0.0014 19.6 2.2 21 24-49 9-29 (73)
32 PF02225 PA: PA domain; Inter 26.7 45 0.00098 20.1 1.5 14 39-52 31-44 (101)
33 COG3647 Predicted membrane pro 25.6 65 0.0014 24.4 2.4 35 44-78 49-101 (205)
34 PF01408 GFO_IDH_MocA: Oxidore 24.3 1.1E+02 0.0023 18.9 2.9 23 24-51 73-95 (120)
35 PF08731 AFT: Transcription fa 23.8 47 0.001 23.0 1.3 33 26-58 3-35 (111)
36 PF14159 CAAD: CAAD domains of 23.4 75 0.0016 20.7 2.1 20 15-34 66-85 (90)
37 PF01583 APS_kinase: Adenylyls 22.8 1.6E+02 0.0034 20.9 3.8 27 21-51 54-83 (156)
38 TIGR00824 EIIA-man PTS system, 21.8 1.3E+02 0.0027 19.8 3.0 27 28-54 46-72 (116)
39 KOG3062 RNA polymerase II elon 21.7 1.1E+02 0.0023 24.4 3.0 31 23-58 60-91 (281)
40 PF03610 EIIA-man: PTS system 20.5 1.2E+02 0.0025 19.5 2.6 27 29-55 46-72 (116)
41 TIGR02754 sod_Ni_protease nick 20.2 41 0.00088 20.6 0.3 16 30-50 8-23 (90)
42 PF05666 Fels1: Fels-1 Prophag 20.1 46 0.00099 19.6 0.5 9 40-50 15-23 (45)
No 1
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=8.5e-29 Score=183.89 Aligned_cols=72 Identities=36% Similarity=0.611 Sum_probs=70.0
Q ss_pred Chhhhhcc-----cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcC
Q 034836 1 MISAYFRI-----SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAG 75 (82)
Q Consensus 1 lI~~yL~~-----~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl 75 (82)
+|+.||++ +|++ |||||||||+++++|++.| .+|++||||||.|||+||+.|||++++||++||.||
T Consensus 51 ~i~~YL~k~~dl~d~~i---HLlFSAnRwe~~~~i~e~l-----~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL 122 (208)
T KOG3327|consen 51 LIDGYLRKKSDLPDHTI---HLLFSANRWEHVSLIKEKL-----AKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGL 122 (208)
T ss_pred HHHHHHHhccCCcHHHH---HHHhccchhhHHHHHHHHH-----hcCCeEEEecceecchhhhhhcCCCcchhhCCccCC
Confidence 58999998 8999 9999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCCC
Q 034836 76 SRFGT 80 (82)
Q Consensus 76 ~r~~~ 80 (82)
|||+.
T Consensus 123 ~KPDl 127 (208)
T KOG3327|consen 123 PKPDL 127 (208)
T ss_pred CCCCe
Confidence 99985
No 2
>PLN02924 thymidylate kinase
Probab=99.81 E-value=7.9e-20 Score=133.44 Aligned_cols=71 Identities=45% Similarity=0.661 Sum_probs=64.0
Q ss_pred hhhhhcc-----cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCC
Q 034836 2 ISAYFRI-----SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGS 76 (82)
Q Consensus 2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~ 76 (82)
|.++|.+ +.+. ++||+|||++|+..|+|+| ++|.+||||||.+|++|||+++|++.+|+.+.+.++|
T Consensus 63 ir~~l~~~~~~~~~~~---~llf~adR~~~~~~I~pal-----~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~ 134 (220)
T PLN02924 63 ISAYLSNKSQLDDRAI---HLLFSANRWEKRSLMERKL-----KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLP 134 (220)
T ss_pred HHHHHhCCCCCCHHHH---HHHHHHHHHHHHHHHHHHH-----HCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCC
Confidence 4455543 5666 9999999999998999999 9999999999999999999999999999999999999
Q ss_pred CCCC
Q 034836 77 RFGT 80 (82)
Q Consensus 77 r~~~ 80 (82)
+|+-
T Consensus 135 ~PDl 138 (220)
T PLN02924 135 APDL 138 (220)
T ss_pred CCCE
Confidence 9973
No 3
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.78 E-value=5.3e-19 Score=129.61 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=56.8
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhh-ccCCCHHHHHhHhhcCC---CCC
Q 034836 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFAS-AKGIDVEWCKAHWAAGS---RFG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~-akgl~~~w~~~~d~gl~---r~~ 79 (82)
+.+. +|||+|||++|+. .|+|+| ++|.+||||||.+|++|||+ ++|++++|+.+.+.-.| +|+
T Consensus 62 ~~~e---~lLfaadR~~h~~~~i~pal-----~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD 129 (208)
T COG0125 62 PKAE---ALLFAADRAQHLEEVIKPAL-----KEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPD 129 (208)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHhh-----cCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCC
Confidence 5666 9999999999987 799999 99999999999999999997 58999999998876666 776
No 4
>PRK13976 thymidylate kinase; Provisional
Probab=99.76 E-value=1.8e-18 Score=125.31 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=59.0
Q ss_pred hhhhhcc-----cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh-
Q 034836 2 ISAYFRI-----SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA- 73 (82)
Q Consensus 2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~- 73 (82)
|.++|.+ +.+. +|||+|||++|++ .|+|+| ++|.+||||||++|++|||++ +|++.+|+...+.
T Consensus 48 ir~~l~~~~~~~~~~~---~llf~a~R~~~~~~~I~p~l-----~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~ 119 (209)
T PRK13976 48 VRGLLLSLKNLDKISE---LLLFIAMRREHFVKVILPAL-----LQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDL 119 (209)
T ss_pred HHHHHcCCcCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHH
Confidence 4555543 4555 9999999999987 699999 999999999999999999995 7999999998875
Q ss_pred -cCCCCC
Q 034836 74 -AGSRFG 79 (82)
Q Consensus 74 -gl~r~~ 79 (82)
+.|+|+
T Consensus 120 ~~~~~PD 126 (209)
T PRK13976 120 VVDKYPD 126 (209)
T ss_pred hhCCCCC
Confidence 346776
No 5
>PRK07933 thymidylate kinase; Validated
Probab=99.71 E-value=1.1e-17 Score=120.77 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=53.6
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc------CCCHHHHHhHhh---cCCCCC
Q 034836 15 TQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK------GIDVEWCKAHWA---AGSRFG 79 (82)
Q Consensus 15 ~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak------gl~~~w~~~~d~---gl~r~~ 79 (82)
++|||+|||++|.+.|+|+| ++|.+||||||.+|++|||+++ +.+.+|+...+. ++|+|+
T Consensus 66 ~~llf~a~R~~~~~~I~p~l-----~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PD 134 (213)
T PRK07933 66 MATLFALDRAGARDELAGLL-----AAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPD 134 (213)
T ss_pred HHHHHhhhhhhhHHHHHHHH-----hCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCC
Confidence 39999999999998999999 9999999999999999999875 256889988876 678887
No 6
>PRK13974 thymidylate kinase; Provisional
Probab=99.67 E-value=1.6e-16 Score=113.51 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=52.5
Q ss_pred HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034836 16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~ 79 (82)
+|||+|||++|++ .|+|+| .+|.+||||||.+|++|||+. +|++.+|+.+.+. +.++|+
T Consensus 73 ~llf~adr~~~~~~~i~~~l-----~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd 136 (212)
T PRK13974 73 LLLYAADRAQHVSKIIRPAL-----ENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPD 136 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCC
Confidence 9999999999998 599999 999999999999999999985 8999999988875 334564
No 7
>PRK13973 thymidylate kinase; Provisional
Probab=99.66 E-value=2.5e-16 Score=112.58 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=55.2
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034836 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~ 79 (82)
+++. +|||+|||++|+. .|+|+| ++|.+||||||++|++|||++ +|++.+|+...+. ++|+|+
T Consensus 63 ~~~~---~ll~~a~r~~~~~~~i~~~l-----~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD 130 (213)
T PRK13973 63 PRME---ALLFAAARDDHVEEVIRPAL-----ARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPD 130 (213)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCC
Confidence 4555 9999999999997 699999 999999999999999999998 5799999887764 567776
No 8
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.63 E-value=2.9e-16 Score=108.11 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=58.1
Q ss_pred hhhhhcc-----cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccC-CCHHHHHhHhhc
Q 034836 2 ISAYFRI-----SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKG-IDVEWCKAHWAA 74 (82)
Q Consensus 2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akg-l~~~w~~~~d~g 74 (82)
|.++|.+ +.+. ++||+|||.++.. .|+|+| ++|.+||||||.+|++|||++.+ ++.+|+......
T Consensus 42 ir~~l~~~~~~~~~~~---~~l~~a~r~~~~~~~I~~~l-----~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~ 113 (186)
T PF02223_consen 42 IRELLRSESELSPEAE---ALLFAADRAWHLARVIRPAL-----KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKD 113 (186)
T ss_dssp HHHHHHTSSTCGHHHH---HHHHHHHHHHHHHHTHHHHH-----HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHH
T ss_pred HHHHHhcccCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHH
Confidence 4455552 5677 9999999988776 799999 99999999999999999999965 899999887776
Q ss_pred CC--CCC
Q 034836 75 GS--RFG 79 (82)
Q Consensus 75 l~--r~~ 79 (82)
++ +|+
T Consensus 114 ~~~~~PD 120 (186)
T PF02223_consen 114 IFLPKPD 120 (186)
T ss_dssp HHTTE-S
T ss_pred hcCCCCC
Confidence 66 776
No 9
>PRK13975 thymidylate kinase; Provisional
Probab=99.41 E-value=1e-12 Score=90.49 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=55.6
Q ss_pred cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCCCCCC
Q 034836 9 SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGT 80 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~r~~~ 80 (82)
+.++ +++|+++|+++...|++++ .+ .+||+|||.+|++|||.+.|++.+|+......+++|+.
T Consensus 54 ~~~~---~~~f~~~r~~~~~~i~~~~-----~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~ 116 (196)
T PRK13975 54 KETL---ALLFAADRVEHVKEIEEDL-----KK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDL 116 (196)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHH-----cC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCE
Confidence 4556 9999999999999999998 55 57999999999999999999999999888888888873
No 10
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.29 E-value=9.1e-12 Score=85.57 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=54.9
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCHHHHHhHhhcC---CCCC
Q 034836 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCKAHWAAG---SRFG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~~w~~~~d~gl---~r~~ 79 (82)
+.+. ++||++||+++.. .|+|++ ++|.+||+|||.+|++|||++. |++.+|+......+ |+|+
T Consensus 62 ~~~~---~~~~~~~r~~~~~~~i~~~l-----~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd 129 (205)
T PRK00698 62 DKTE---LLLFYAARAQHLEEVIKPAL-----ARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPD 129 (205)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4455 8999999999986 699999 9999999999999999999874 89999999888765 7776
No 11
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.26 E-value=1.8e-11 Score=84.19 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=54.5
Q ss_pred cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhhcCCC--CC
Q 034836 9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWAAGSR--FG 79 (82)
Q Consensus 9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~gl~r--~~ 79 (82)
+++. ++||+++|++... .|++.+ .+|.+||+|||.+|++||+++ ++++.+|+......+++ |+
T Consensus 63 ~~~~---~~l~~~~r~~~~~~~i~~~l-----~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d 129 (195)
T TIGR00041 63 DKAE---ALLFAADRHEHLEDKIKPAL-----AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPD 129 (195)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-----hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCC
Confidence 4455 8999999988875 699999 999999999999999999984 78999999988877765 65
No 12
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.91 E-value=5e-09 Score=70.53 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=48.0
Q ss_pred HHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCH---HHHHhHhhcCCCCC
Q 034836 15 TQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDV---EWCKAHWAAGSRFG 79 (82)
Q Consensus 15 ~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~---~w~~~~d~gl~r~~ 79 (82)
.+++|+++|+++.. .|.|++ ..|.+||||||.+|++||+++. +.+. +|+.....++++|+
T Consensus 63 ~~~~~~~~r~~~~~~~~~~~~-----~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 127 (200)
T cd01672 63 ELLLFAADRAQHVEEVIKPAL-----ARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPD 127 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCC
Confidence 38999999999987 588888 8999999999999999999874 4444 44455555666665
No 13
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.75 E-value=1.2e-08 Score=73.35 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc---cC----CCHHHHHhH----hhcCCCCC
Q 034836 16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA---KG----IDVEWCKAH----WAAGSRFG 79 (82)
Q Consensus 16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a---kg----l~~~w~~~~----d~gl~r~~ 79 (82)
.++|.++|+++.. .|+|.+ ..|.+||+|||.+|++|||.+ .| .+.+|..+. ..++|+|+
T Consensus 74 q~~~~~~R~~~~~~~i~~~l-----~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd 144 (219)
T cd02030 74 QSWMYSSRLLQYSDALEHLL-----STGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPH 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCC
Confidence 4444589999976 699999 999999999999999999864 23 345555443 34457776
No 14
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.48 E-value=6.9e-07 Score=61.62 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=34.1
Q ss_pred HHhHHHhHHHHHHH-HHHHHHHhhhhCCcEEEEeccCchhHHHhhc
Q 034836 16 QFISSLVRIAGRRV-METKWKATKRKAGTTLIVDCYFYSGVVFASA 60 (82)
Q Consensus 16 ~LLFsAdR~e~~~~-I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a 60 (82)
.++|.++|+++... +++ + ++|.+||+|||.+|+++|+..
T Consensus 57 q~~~~~~r~~~~~~~~~~-~-----~~~~~vI~DR~~~S~~~~~~~ 96 (193)
T cd01673 57 QLYFLLSRLKQYKDALEH-L-----STGQGVILERSIFSDRVFAEA 96 (193)
T ss_pred HHHHHHHHHHHHHHHHhh-c-----ccCCceEEEcChhhhHHHHHH
Confidence 77899999999875 555 8 899999999999999999854
No 15
>PHA03132 thymidine kinase; Provisional
Probab=97.93 E-value=6.5e-06 Score=68.93 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=31.4
Q ss_pred HhHHHhHHHHH----HHHHHHHHHhhhhCCcEEEEeccCchhHHHh
Q 034836 17 FISSLVRIAGR----RVMETKWKATKRKAGTTLIVDCYFYSGVVFA 58 (82)
Q Consensus 17 LLFsAdR~e~~----~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq 58 (82)
+||.|||++|. +.|+|.+ ..|.+||||||.+|++||+
T Consensus 335 fl~~adR~~~~~~~~~~i~p~l-----~~g~iVI~DRyi~Ss~avF 375 (580)
T PHA03132 335 FRALATRTRRLVQPESVRRPVA-----PLDNWVLFDRHLLSATVVF 375 (580)
T ss_pred HHHHHHHHHHHHhhhhhccccc-----cCCCEEEEecCccccHHHH
Confidence 46678999997 3578898 9999999999999999843
No 16
>PF12964 DUF3853: Protein of unknown function (DUF3853); InterPro: IPR024363 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=68.53 E-value=4.8 Score=27.32 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCcEEEEec
Q 034836 21 LVRIAGRRVMETKWKATKRKAGTTLIVDC 49 (82)
Q Consensus 21 AdR~e~~~~I~~~L~~~~~~~G~~VI~DR 49 (82)
|+|+..-..|.+++ .+.|..+|.|-
T Consensus 62 a~RiK~sG~id~AI----~Q~Gr~IivD~ 86 (96)
T PF12964_consen 62 ANRIKKSGKIDPAI----TQIGRKIIVDA 86 (96)
T ss_pred HHHHHhcCCccHHH----HHcCCEEEEeH
Confidence 68988777899998 36788999884
No 17
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=67.82 E-value=6.2 Score=31.28 Aligned_cols=35 Identities=9% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHhHHHHHH-HHHHHHHHhhhhCC-cEEEEeccCchhHHHhh
Q 034836 20 SLVRIAGRR-VMETKWKATKRKAG-TTLIVDCYFYSGVVFAS 59 (82)
Q Consensus 20 sAdR~e~~~-~I~~~L~~~~~~~G-~~VI~DRY~~S~~AYq~ 59 (82)
.++|.++.. .+++.+ +.+ .+|+.|+|++++..|+-
T Consensus 109 ~as~e~~~~rLi~~~L-----srpllvilDd~fy~ks~Ryel 145 (340)
T TIGR03575 109 GASEAQGCHSLTKPAV-----SRPLCLVLDDNFYYQSMRYEV 145 (340)
T ss_pred CCcHHHHHHHHhHHHH-----hCCCCceecCCCCCHHHHHHH
Confidence 467888886 688888 776 57888899999998864
No 18
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=62.21 E-value=15 Score=24.52 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=16.7
Q ss_pred hCCcEEEEeccCchhHHHhhc
Q 034836 40 KAGTTLIVDCYFYSGVVFASA 60 (82)
Q Consensus 40 ~~G~~VI~DRY~~S~~AYq~a 60 (82)
+...+|||||=...++||...
T Consensus 71 ~~~~~vi~Dr~~~d~~aY~~~ 91 (163)
T PF13521_consen 71 KSSDVVICDRGPLDTLAYSEF 91 (163)
T ss_dssp H-SSEEEESS-HHHHHHHHHH
T ss_pred cCCCcEEEeCChHHHHHHHHH
Confidence 457789999999999999765
No 19
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=56.42 E-value=17 Score=24.57 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=26.2
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCch-hHHHhhc
Q 034836 16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYS-GVVFASA 60 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S-~~AYq~a 60 (82)
.+-|...|.+.... . ..+..+|.||-.+| -.+|..+
T Consensus 2 Q~~~l~~R~~~~~~----~-----~~~~~~i~eRsi~sd~~vF~~~ 38 (146)
T PF01712_consen 2 QLYFLLSRFEQYKE----L-----NTKQNVIMERSIYSDDFVFAKM 38 (146)
T ss_dssp HHHHHHHHHHHHHH----S-----TSSSEEEEES-HHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHH----H-----hcCCCceecCCeeechHHHHHH
Confidence 45677788776654 4 67789999999999 7777654
No 20
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=49.56 E-value=15 Score=24.62 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCH
Q 034836 29 VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDV 65 (82)
Q Consensus 29 ~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~ 65 (82)
.|.+.++.+++++|..+|.|+-. +.|... +.|+
T Consensus 117 ~i~~~v~~~a~~~g~~~Vl~~~~---vly~~~-~~DI 149 (158)
T PF03938_consen 117 KINKAVEEYAKENGYDLVLDKNA---VLYADP-AYDI 149 (158)
T ss_dssp HHHHHHHHHHHHTT-SEEEEGGG---EEEE-T-TSE-
T ss_pred HHHHHHHHHHHHcCCeEEEeCCc---eEeeCC-CCCh
Confidence 57777799999999999999654 777654 4443
No 21
>PRK10780 periplasmic chaperone; Provisional
Probab=43.81 E-value=32 Score=23.91 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCH
Q 034836 29 VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDV 65 (82)
Q Consensus 29 ~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~ 65 (82)
.|...++.+++++|..+|.|+ +++.|... ++|+
T Consensus 124 ki~~ai~~vak~~gy~~Vld~---~~v~Y~~~-~~DI 156 (165)
T PRK10780 124 RIQTAVKSVANKQGYDLVVDA---NAVAYNSS-DKDI 156 (165)
T ss_pred HHHHHHHHHHHHcCCeEEEeC---CceeeeCC-CCCc
Confidence 466666888999999999996 56888543 3444
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=43.36 E-value=15 Score=23.54 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=10.9
Q ss_pred hCCcEEEEeccCc
Q 034836 40 KAGTTLIVDCYFY 52 (82)
Q Consensus 40 ~~G~~VI~DRY~~ 52 (82)
-+|++|||+|-..
T Consensus 50 v~GkIVlc~~~~~ 62 (126)
T cd02120 50 VKGKIVLCDRGGN 62 (126)
T ss_pred ccccEEEEeCCCC
Confidence 6799999999654
No 23
>PRK12864 YciI-like protein; Reviewed
Probab=39.82 E-value=57 Score=20.60 Aligned_cols=29 Identities=10% Similarity=-0.097 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCch
Q 034836 20 SLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYS 53 (82)
Q Consensus 20 sAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S 53 (82)
.+.|-+|++-+++.. ++|.+|++-.+.+.
T Consensus 19 ~~~r~~H~~~l~~~~-----~~G~~~~~Gp~~~~ 47 (89)
T PRK12864 19 APFREAHLDRLAKLK-----EQGILITLGPTKDL 47 (89)
T ss_pred HHhHHHHHHHHHHHH-----hCCeEEEecCCCCC
Confidence 567888999999988 89999999988764
No 24
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=37.46 E-value=45 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhhCCcEEEE
Q 034836 24 IAGRRVMETKWKATKRKAGTTLIV 47 (82)
Q Consensus 24 ~e~~~~I~~~L~~~~~~~G~~VI~ 47 (82)
.+.+...++.| ++|..||.
T Consensus 36 ~~kv~qv~~qL-----~~G~avI~ 54 (70)
T PF06794_consen 36 EEKVEQVKQQL-----KSGEAVIV 54 (70)
T ss_dssp HHHHHHHHHHH-----HTTSEEEE
T ss_pred HHHHHHHHHHH-----HcCCEEEE
Confidence 34566788999 99998885
No 25
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.49 E-value=26 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=24.3
Q ss_pred cEEEEeccCchhHHHhhccCCCHHHHHhHhhcC
Q 034836 43 TTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAG 75 (82)
Q Consensus 43 ~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl 75 (82)
..||||+++..-+||+--..+.-|+.+..+.-.
T Consensus 71 ylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~ 103 (216)
T KOG0862|consen 71 YLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNI 103 (216)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 379999999999999876556566655554443
No 26
>PRK04966 hypothetical protein; Provisional
Probab=35.49 E-value=49 Score=21.21 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhhCCcEEEE
Q 034836 24 IAGRRVMETKWKATKRKAGTTLIV 47 (82)
Q Consensus 24 ~e~~~~I~~~L~~~~~~~G~~VI~ 47 (82)
.+.++..+..| ++|..||.
T Consensus 36 ~~kv~qv~~qL-----~~G~~viv 54 (72)
T PRK04966 36 EQKVADVKRQL-----QSGEAVLV 54 (72)
T ss_pred HHHHHHHHHHH-----HcCCEEEE
Confidence 34566788999 99998885
No 27
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=32.05 E-value=24 Score=23.34 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=31.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHhhhhC-CcEEEEeccCchhHHHhhccCCCHHHHHh
Q 034836 16 QFISSLVRIAGRRVMETKWKATKRKA-GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70 (82)
Q Consensus 16 ~LLFsAdR~e~~~~I~~~L~~~~~~~-G~~VI~DRY~~S~~AYq~akgl~~~w~~~ 70 (82)
.+.||.|-.+|.+.+.. |-.+-++. |..|++|.|--..++=+ -...|+.+
T Consensus 4 fI~Ys~d~~~h~~~V~~-la~~L~~~~g~~V~lD~~~~~~i~~~----g~~~W~~~ 54 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLA-LAEFLRQNCGIDVILDQWELNEIARQ----GPPRWMER 54 (150)
T ss_pred EEEeCCCCHHHHHHHHH-HHHHHHhccCCceeecHHhhcccccC----CHHHHHHH
Confidence 35677888888764332 22333577 99999999877555322 23666644
No 28
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=29.93 E-value=93 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhCCcEEEEeccCch
Q 034836 28 RVMETKWKATKRKAGTTLIVDCYFYS 53 (82)
Q Consensus 28 ~~I~~~L~~~~~~~G~~VI~DRY~~S 53 (82)
..++..+ ++|.+||+|...+.
T Consensus 59 ~~i~~~l-----~~~~~VI~D~~~~~ 79 (249)
T TIGR03574 59 YLIKTAL-----KNKYSVIVDDTNYY 79 (249)
T ss_pred HHHHHHH-----hCCCeEEEeccchH
Confidence 3578888 88999999987644
No 29
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=28.51 E-value=73 Score=24.17 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhCCcEEEEecc-CchhHHHhh
Q 034836 23 RIAGRRVMETKWKATKRKAGTTLIVDCY-FYSGVVFAS 59 (82)
Q Consensus 23 R~e~~~~I~~~L~~~~~~~G~~VI~DRY-~~S~~AYq~ 59 (82)
|......++..| .+..+||+|-= ++-|.-|+-
T Consensus 57 R~~l~s~v~r~l-----s~~~iVI~Dd~nYiKg~RYel 89 (270)
T PF08433_consen 57 RGSLKSAVERAL-----SKDTIVILDDNNYIKGMRYEL 89 (270)
T ss_dssp HHHHHHHHHHHH-----TT-SEEEE-S---SHHHHHHH
T ss_pred HHHHHHHHHHhh-----ccCeEEEEeCCchHHHHHHHH
Confidence 444444577777 77789999864 467777653
No 30
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.58 E-value=61 Score=23.69 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhhCCcEEEEeccCchhH
Q 034836 24 IAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55 (82)
Q Consensus 24 ~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~ 55 (82)
..|.+.+.++| ++|+.|+|+-=.-.++
T Consensus 78 ~~H~e~~~~AL-----~aGkhVl~EKPla~t~ 104 (342)
T COG0673 78 ALHAELALAAL-----EAGKHVLCEKPLALTL 104 (342)
T ss_pred hhhHHHHHHHH-----hcCCEEEEcCCCCCCH
Confidence 45778889999 9999999987555544
No 31
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=27.03 E-value=65 Score=19.56 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhCCcEEEEec
Q 034836 24 IAGRRVMETKWKATKRKAGTTLIVDC 49 (82)
Q Consensus 24 ~e~~~~I~~~L~~~~~~~G~~VI~DR 49 (82)
.+..+.|...| ++|.+||+|=
T Consensus 9 ~~D~~~i~~~l-----~~g~~Vivnl 29 (73)
T PF04472_consen 9 FEDAREIVDAL-----REGKIVIVNL 29 (73)
T ss_dssp GGGHHHHHHHH-----HTT--EEEE-
T ss_pred HHHHHHHHHHH-----HcCCEEEEEC
Confidence 34566788999 9999999883
No 32
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=26.67 E-value=45 Score=20.13 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=11.0
Q ss_pred hhCCcEEEEeccCc
Q 034836 39 RKAGTTLIVDCYFY 52 (82)
Q Consensus 39 ~~~G~~VI~DRY~~ 52 (82)
.-+|++|||+|=.-
T Consensus 31 ~~~gkIvlv~rg~~ 44 (101)
T PF02225_consen 31 DVKGKIVLVERGSC 44 (101)
T ss_dssp TCTTSEEEEESTSS
T ss_pred cccceEEEEecCCC
Confidence 46899999987654
No 33
>COG3647 Predicted membrane protein [Function unknown]
Probab=25.56 E-value=65 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=26.4
Q ss_pred EEEEeccCchhHHHhh-----------c----cCCCHHHH---HhHhhcCCCC
Q 034836 44 TLIVDCYFYSGVVFAS-----------A----KGIDVEWC---KAHWAAGSRF 78 (82)
Q Consensus 44 ~VI~DRY~~S~~AYq~-----------a----kgl~~~w~---~~~d~gl~r~ 78 (82)
++..-||..|++||.- + ...+.||+ .+++-|++|-
T Consensus 49 ~~~~~R~~~s~laY~Lmf~w~ilh~iGa~YTfa~VPfdw~n~lv~~wlg~~RN 101 (205)
T COG3647 49 LATAKRYPLSPLAYTLMFLWAILHMIGAQYTFAKVPFDWINFLVQEWLGLSRN 101 (205)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhccceehhhCCHHHHHHHHHHHhccccC
Confidence 4567899999999973 2 14788886 5788888884
No 34
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.33 E-value=1.1e+02 Score=18.94 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhhCCcEEEEeccC
Q 034836 24 IAGRRVMETKWKATKRKAGTTLIVDCYF 51 (82)
Q Consensus 24 ~e~~~~I~~~L~~~~~~~G~~VI~DRY~ 51 (82)
..|.+.+++.+ ++|+.|+|+-=.
T Consensus 73 ~~h~~~~~~~l-----~~g~~v~~EKP~ 95 (120)
T PF01408_consen 73 SSHAEIAKKAL-----EAGKHVLVEKPL 95 (120)
T ss_dssp GGHHHHHHHHH-----HTTSEEEEESSS
T ss_pred cchHHHHHHHH-----HcCCEEEEEcCC
Confidence 45788899999 999999998633
No 35
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=23.82 E-value=47 Score=22.99 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhhCCcEEEEeccCchhHHHh
Q 034836 26 GRRVMETKWKATKRKAGTTLIVDCYFYSGVVFA 58 (82)
Q Consensus 26 ~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq 58 (82)
...+|+|.||.....+|+-|+..|--.+-|.|.
T Consensus 3 ~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~Fk 35 (111)
T PF08731_consen 3 DKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFK 35 (111)
T ss_pred chHHHHHHHHHHhhhcCceEEEEecCCceEEEE
Confidence 345799999889999999999999888888775
No 36
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=23.39 E-value=75 Score=20.66 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=16.2
Q ss_pred HHHhHHHhHHHHHHHHHHHH
Q 034836 15 TQFISSLVRIAGRRVMETKW 34 (82)
Q Consensus 15 ~~LLFsAdR~e~~~~I~~~L 34 (82)
..|||+.||.|..+.|+...
T Consensus 66 ryLL~~~~R~el~~~i~~~k 85 (90)
T PF14159_consen 66 RYLLFAENRQELLQKIQSLK 85 (90)
T ss_pred HHHcChHhHHHHHHHHHHHH
Confidence 47999999999998777543
No 37
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=22.78 E-value=1.6e+02 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=17.9
Q ss_pred HhHHHHHHH---HHHHHHHhhhhCCcEEEEeccC
Q 034836 21 LVRIAGRRV---METKWKATKRKAGTTLIVDCYF 51 (82)
Q Consensus 21 AdR~e~~~~---I~~~L~~~~~~~G~~VI~DRY~ 51 (82)
.||+++... +-..| .++|.+|||+--.
T Consensus 54 ~dR~e~~rr~~~~A~ll----~~~G~ivIva~is 83 (156)
T PF01583_consen 54 EDREENIRRIAEVAKLL----ADQGIIVIVAFIS 83 (156)
T ss_dssp HHHHHHHHHHHHHHHHH----HHTTSEEEEE---
T ss_pred HHHHHHHHHHHHHHHHH----HhCCCeEEEeecc
Confidence 589998863 44444 3899999998443
No 38
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=21.84 E-value=1.3e+02 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhCCcEEEEeccCchh
Q 034836 28 RVMETKWKATKRKAGTTLIVDCYFYSG 54 (82)
Q Consensus 28 ~~I~~~L~~~~~~~G~~VI~DRY~~S~ 54 (82)
+.|+..++.....+|.+|++|=|--|-
T Consensus 46 ~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 46 EKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 346666665556688999999876554
No 39
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=21.73 E-value=1.1e+02 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhCCcEEEEeccCch-hHHHh
Q 034836 23 RIAGRRVMETKWKATKRKAGTTLIVDCYFYS-GVVFA 58 (82)
Q Consensus 23 R~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S-~~AYq 58 (82)
|-+........| ++|.+||||--.|. |+-||
T Consensus 60 Rg~L~S~v~R~L-----sk~~iVI~DslNyIKGfRYe 91 (281)
T KOG3062|consen 60 RGKLRSAVDRSL-----SKGDIVIVDSLNYIKGFRYE 91 (281)
T ss_pred HHHHHHHHHhhc-----ccCcEEEEecccccccceee
Confidence 444445577788 99999999965443 44444
No 40
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=20.50 E-value=1.2e+02 Score=19.46 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhCCcEEEEeccCchhH
Q 034836 29 VMETKWKATKRKAGTTLIVDCYFYSGV 55 (82)
Q Consensus 29 ~I~~~L~~~~~~~G~~VI~DRY~~S~~ 55 (82)
.++..++.....+|.+|++|=+--|..
T Consensus 46 ~l~~~i~~~~~~~~vlil~Dl~ggsp~ 72 (116)
T PF03610_consen 46 KLEEAIEELDEGDGVLILTDLGGGSPF 72 (116)
T ss_dssp HHHHHHHHCCTTSEEEEEESSTTSHHH
T ss_pred HHHHHHHhccCCCcEEEEeeCCCCccc
Confidence 456666555568899999997765543
No 41
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=20.17 E-value=41 Score=20.55 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhCCcEEEEecc
Q 034836 30 METKWKATKRKAGTTLIVDCY 50 (82)
Q Consensus 30 I~~~L~~~~~~~G~~VI~DRY 50 (82)
|.|.| ++|.+|++|+.
T Consensus 8 M~P~l-----~~GD~vlv~~~ 23 (90)
T TIGR02754 8 MSPTL-----PPGDRIIVVPW 23 (90)
T ss_pred ccCcc-----CCCCEEEEEEc
Confidence 67899 99999999974
No 42
>PF05666 Fels1: Fels-1 Prophage Protein-like; InterPro: IPR008617 The function of these proteins is unknown.
Probab=20.12 E-value=46 Score=19.56 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=7.1
Q ss_pred hCCcEEEEecc
Q 034836 40 KAGTTLIVDCY 50 (82)
Q Consensus 40 ~~G~~VI~DRY 50 (82)
.+| |+||+|
T Consensus 15 ~~G--V~CD~~ 23 (45)
T PF05666_consen 15 ANG--VFCDKK 23 (45)
T ss_pred CCC--ceEccc
Confidence 455 799999
Done!