BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034848
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
+L Y K + NR P + K +R+E+ + + +D KIR LI + E+ + L
Sbjct: 527 LLNFYDKTMEAINRGVP-LEEIAKLPVREEIGRMKFERDVSKIRSLIDKTNEQFEEL 582
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,094,395
Number of Sequences: 62578
Number of extensions: 62201
Number of successful extensions: 345
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 13
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)