BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034848
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3DLF3|LYRM2_XENTR LYR motif-containing protein 2 OS=Xenopus tropicalis GN=lyrm2
PE=3 SV=1
Length = 87
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 5 FDLQDFIVRGRVLKLYRKALRTANRAPPHARDE--LKQTIRQEMDKHRDCKDRQKIRYLI 62
L+ F+VR +VL LYRK LR+ R P A D+ +++ R+E +++ + IR +I
Sbjct: 10 LTLKQFLVRQQVLGLYRKILRSV-RQIPDAADQRYMQEWAREEFRRNKGATEEIAIRMMI 68
Query: 63 SEGLERLKGLDEMLDM 78
+ G +L+ L+ L +
Sbjct: 69 THGQRQLQELERALHL 84
>sp|Q5PQ90|LYRM2_XENLA LYR motif-containing protein 2 OS=Xenopus laevis GN=lyrm2 PE=3
SV=1
Length = 87
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 5 FDLQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLIS 63
L+ F+VR +VL LYR+ +R + P A R L+ R E +++ + IR +IS
Sbjct: 10 LTLKQFLVRQQVLGLYRRIVRAVRQIPGAADRQYLQDWARDEFRRNKGASEEIAIRMMIS 69
Query: 64 EGLERLKGLDEMLDM 78
G +L+ L+ L +
Sbjct: 70 HGQRQLQELERALQL 84
>sp|Q5RIM0|LYRM2_DANRE LYR motif-containing protein 2 OS=Danio rerio GN=lyrm2 PE=3 SV=1
Length = 88
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 5 FDLQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLIS 63
L+ F+ R +VL LYR RT R P + R L+ R E +++ D+ IR +IS
Sbjct: 11 LSLKQFLQRQKVLCLYRDLQRTIRRVPHESDRKYLRDWARDEFRRNKSNTDQDAIRMMIS 70
Query: 64 EGLERLKGLDEMLDMQG 80
+ L+ L L + G
Sbjct: 71 QAHNHLEELRRSLALAG 87
>sp|B5XFA7|LYRM2_SALSA LYR motif-containing protein 2 OS=Salmo salar GN=lyrm2 PE=3 SV=1
Length = 90
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
L+ FI R +VL LYR +RT + P R L+ R E ++++ ++ IR +I++
Sbjct: 13 LKQFIQRQKVLSLYRNMMRTIRQVPDEGDRKYLRDWARDEFKRNKNSTNQDAIRMMITQA 72
>sp|B6NK32|LYRM9_BRAFL LYR motif-containing protein 9 OS=Branchiostoma floridae GN=LYRM9
PE=3 SV=1
Length = 78
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 19 LYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLE 67
LYR R +R P A+ K +RQ + H D D ++I+ +I + LE
Sbjct: 19 LYRYLFRCCDRLPEDAKGHYKHHVRQGFNSHEDETDPERIQQIIKKALE 67
>sp|Q9ZLA7|Y736_HELPJ Uncharacterized aminotransferase jhp_0673 OS=Helicobacter pylori
(strain J99) GN=jhp_0673 PE=3 SV=1
Length = 369
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 30 APPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEML 76
P +E++ + Q M HR KD +KI + E L+++ GL+E+L
Sbjct: 7 GPVAINEEMRSSFSQPMPHHR-TKDFEKIFQSVRENLKKMTGLEEVL 52
>sp|O25436|Y736_HELPY Uncharacterized aminotransferase HP_0736 OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=HP_0736 PE=3 SV=1
Length = 369
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 30 APPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEML 76
P +E++ + Q M HR KD +KI + E L+++ GL+E+L
Sbjct: 7 GPVAINEEMRTSFSQPMPHHR-TKDFEKIFQSVRENLKKMTGLEEVL 52
>sp|A3KNJ8|LYM5B_DANRE LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3
SV=1
Length = 84
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 12 VRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKG 71
R V +LY KAL R P D ++ +R K++D +D KI+ LIS G +K
Sbjct: 5 FRAEVKQLY-KALLFLGREYPKGADYFRERLRAAFAKNKDMRDPDKIKQLISRGEFVVKE 63
Query: 72 LDEMLDMQGH 81
L+ + ++ +
Sbjct: 64 LEALYYLRKY 73
>sp|P53076|VID30_YEAST Vacuolar import and degradation protein 30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VID30 PE=1
SV=1
Length = 958
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 17 LKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
LK +K N ++D ++ RQ M + R K RQ++RYLI++G
Sbjct: 735 LKDLQKDAVNVNGQHSESKDVIRHNERQIMKEERMVKIRQELRYLINKG 783
>sp|Q3E785|SDHF1_YEAST Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YDR379C-A PE=1 SV=1
Length = 79
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDC--KDRQKIRYLISEGLERLKGLD 73
VL LYR ++RTA+ P + I +E K+R+ KD I +L+ G +++
Sbjct: 12 VLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRNLPRKDFTTIEHLLRVGNKKIATFS 71
>sp|A6ZYX9|SDHF1_YEAS7 Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_1267
PE=3 SV=1
Length = 79
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDC--KDRQKIRYLISEGLERLKGLD 73
VL LYR ++RTA+ P + I +E K+R+ KD I +L+ G +++
Sbjct: 12 VLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRNLPRKDFTTIEHLLRVGNKKIATFS 71
>sp|D4AXX2|P20D1_ARTBC Probable carboxypeptidase ARB_01041 OS=Arthroderma benhamiae
(strain ATCC MYA-4681 / CBS 112371) GN=ARB_01041 PE=3
SV=1
Length = 460
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 23 ALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEML 76
A+R A P A+D + + IR KHR KD + IS GLER KG E++
Sbjct: 328 AVRLAAGNPEDAKDIIFRAIRNAATKHR--KDATVV---ISNGLERPKGDIEVI 376
>sp|D4D6R4|P20D1_TRIVH Probable carboxypeptidase TRV_02791 OS=Trichophyton verrucosum
(strain HKI 0517) GN=TRV_02791 PE=3 SV=1
Length = 460
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 23 ALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEML 76
A+R A P A+D + + IR KHR KD + IS GLER KG E++
Sbjct: 328 AVRLAAGDPEDAKDIIFRAIRNAATKHR--KDATVV---ISNGLERPKGDIEVI 376
>sp|Q6BIY6|ACN9_DEBHA Acetate non-utilizing protein 9, mitochondrial OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=ACN9 PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 17 LKLYRKALRT-ANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLD 73
LKLY+ LR AN+ P R Q ++ E H++ + I +++ + LKG+D
Sbjct: 25 LKLYKALLRAHANKLPVELRPLGDQYVKAEFKAHKNIDNPLHIVGFLAQWQDYLKGID 82
>sp|Q6FFK4|ATPF_ACIAD ATP synthase subunit b OS=Acinetobacter sp. (strain ADP1) GN=atpF
PE=3 SV=1
Length = 156
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 15 RVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDE 74
R +L +A A R + K+T+ QE++ R+ + RQ++ L +G E++ L++
Sbjct: 82 RAAQLIEEARTQATAEGERIRQQSKETVDQEINAARE-ELRQQVAALAVDGAEKI--LNQ 138
Query: 75 MLDMQGH 81
+D Q H
Sbjct: 139 QVDQQAH 145
>sp|Q55BM0|SDHFB_DICDI Succinate dehydrogenase assembly factor 1 homolog B,
mitochondrial OS=Dictyostelium discoideum GN=sdhaf1B
PE=3 SV=1
Length = 111
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 16 VLKLYRKALRTANRAPPHAR-----DELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLK 70
VL LY++ L +A R P + +K R + H+ KD + I L+ +G E LK
Sbjct: 13 VLDLYKRCLYSAKRCPKYQNQMMMESYIKLKFRSNKEIHQ--KDFETIENLLKQGEEELK 70
Query: 71 GLDEMLDMQG 80
+++ +++
Sbjct: 71 SMNDFHELRA 80
>sp|A9SNJ1|LYRM9_PHYPA LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella
patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1
Length = 66
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLIS 63
V + YR+ L+ R PP +R Q R+ + + +D + IR L++
Sbjct: 5 VKQAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEVEDPESIRSLLA 52
>sp|P34542|YNC9_CAEEL Uncharacterized protein R05D3.9 OS=Caenorhabditis elegans
GN=R05D3.9/R05D3.10 PE=4 SV=3
Length = 646
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 29 RAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQGH 81
+ P H + L+ I E D+ K+ +RYL E + + G +E L + H
Sbjct: 553 KCPDHLQKILQMIITSEADQVLSTKEPHPLRYLQVEKVNEVFGFEETLVLPDH 605
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,615,129
Number of Sequences: 539616
Number of extensions: 868146
Number of successful extensions: 3794
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3787
Number of HSP's gapped (non-prelim): 32
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)