Query 034848
Match_columns 81
No_of_seqs 130 out of 774
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05347 Complex1_LYR: Complex 99.8 5E-19 1.1E-23 99.2 6.2 58 14-71 1-59 (59)
2 KOG3801 Uncharacterized conser 99.8 4.4E-18 9.5E-23 103.2 8.9 69 11-79 4-73 (94)
3 PF13232 Complex1_LYR_1: Compl 99.8 2.1E-18 4.5E-23 97.7 6.7 60 14-73 1-61 (61)
4 KOG4620 Uncharacterized conser 99.6 7.4E-15 1.6E-19 86.0 7.9 66 10-75 5-72 (80)
5 KOG3426 NADH:ubiquinone oxidor 99.3 3.7E-11 8E-16 75.8 8.0 73 2-74 12-90 (124)
6 KOG4100 Uncharacterized conser 98.8 8E-08 1.7E-12 60.8 8.9 66 14-80 10-75 (125)
7 KOG3466 NADH:ubiquinone oxidor 98.6 1.8E-07 3.9E-12 61.1 7.1 67 5-72 5-73 (157)
8 PF13233 Complex1_LYR_2: Compl 98.2 9.2E-06 2E-10 49.7 7.0 60 16-75 1-72 (104)
9 PF04716 ETC_C1_NDUFA5: ETC co 95.9 0.087 1.9E-06 29.5 6.6 51 12-62 3-55 (57)
10 KOG3365 NADH:ubiquinone oxidor 80.5 14 0.0003 24.4 6.9 65 13-77 50-125 (145)
11 PF08006 DUF1700: Protein of u 67.9 26 0.00056 23.0 5.7 50 11-63 1-61 (181)
12 PF11946 DUF3463: Domain of un 54.5 12 0.00025 24.6 2.1 39 5-43 13-53 (138)
13 PF06694 Plant_NMP1: Plant nuc 50.2 87 0.0019 23.3 6.2 59 11-78 252-316 (325)
14 KOG0493 Transcription factor E 43.2 22 0.00047 26.1 2.2 23 37-59 256-278 (342)
15 PRK05629 hypothetical protein; 42.7 1.2E+02 0.0025 21.6 5.9 59 17-75 108-168 (318)
16 PF08134 cIII: cIII protein fa 39.4 50 0.0011 17.3 2.6 19 56-74 24-42 (44)
17 cd01459 vWA_copine_like VWA Co 39.2 1.3E+02 0.0029 21.3 5.7 53 14-66 116-182 (254)
18 PF07438 DUF1514: Protein of u 38.8 78 0.0017 18.2 4.7 37 34-70 29-65 (66)
19 cd02679 MIT_spastin MIT: domai 37.9 23 0.00051 20.8 1.5 27 3-29 14-40 (79)
20 COG0362 Gnd 6-phosphogluconate 37.3 87 0.0019 24.4 4.7 44 35-78 368-411 (473)
21 KOG0489 Transcription factor z 37.1 40 0.00088 23.8 2.8 36 37-72 169-206 (261)
22 PHA02571 a-gt.4 hypothetical p 34.8 1.2E+02 0.0026 19.1 8.7 63 12-77 42-104 (109)
23 PRK10635 bacterioferritin; Pro 31.9 1.3E+02 0.0027 19.7 4.4 31 14-44 95-126 (158)
24 PF06144 DNA_pol3_delta: DNA p 31.5 1E+02 0.0023 19.2 3.9 42 35-76 126-167 (172)
25 PF12213 Dpoe2NT: DNA polymera 31.4 81 0.0018 18.2 3.0 58 4-64 12-72 (73)
26 KOG2653 6-phosphogluconate deh 29.8 92 0.002 24.1 3.8 41 35-78 373-416 (487)
27 KOG0810 SNARE protein Syntaxin 29.2 1.9E+02 0.004 21.2 5.2 60 10-69 119-182 (297)
28 KOG1547 Septin CDC10 and relat 26.6 1.2E+02 0.0026 22.3 3.8 33 18-50 176-217 (336)
29 PF02093 Gag_p30: Gag P30 core 25.5 1.7E+02 0.0036 20.5 4.2 40 14-53 102-158 (211)
30 COG3236 Uncharacterized protei 24.9 81 0.0018 21.1 2.5 25 5-29 45-73 (162)
31 PF09860 DUF2087: Uncharacteri 24.0 1.5E+02 0.0033 16.9 5.3 52 28-80 4-57 (71)
32 KOG1107 Membrane coat complex 23.8 2E+02 0.0043 23.9 4.8 63 13-75 656-723 (760)
33 PF01519 DUF16: Protein of unk 23.6 1.1E+02 0.0024 19.1 2.7 25 56-80 40-66 (102)
34 PRK07914 hypothetical protein; 22.2 3E+02 0.0065 19.6 6.2 57 18-74 109-169 (320)
35 COG4367 Uncharacterized protei 21.8 1.9E+02 0.0042 17.7 3.5 35 39-73 8-44 (97)
36 PRK01699 fliE flagellar hook-b 21.7 89 0.0019 19.2 2.1 15 12-26 83-97 (99)
37 PF04695 Pex14_N: Peroxisomal 21.6 96 0.0021 19.7 2.3 25 42-67 25-49 (136)
38 PRK05907 hypothetical protein; 21.6 3.2E+02 0.007 19.8 5.3 42 30-71 131-173 (311)
39 COG4086 Predicted secreted pro 21.2 3.5E+02 0.0075 20.0 5.3 34 35-69 193-226 (299)
40 PF08025 Antimicrobial_3: Spid 20.8 1.1E+02 0.0024 15.2 1.9 30 18-52 4-33 (37)
No 1
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.78 E-value=5e-19 Score=99.19 Aligned_cols=58 Identities=41% Similarity=0.624 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhcCChhh-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 034848 14 GRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKG 71 (81)
Q Consensus 14 ~~VL~LYR~~LR~~~~~~~~~-r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~ 71 (81)
++||+|||++||+++.+|+.. +.++...||++|++|+++|||..|+.++..|+..|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 479999999999999999854 9999999999999999999999999999999999874
No 2
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=99.77 E-value=4.4e-18 Score=103.22 Aligned_cols=69 Identities=23% Similarity=0.387 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCChh-hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034848 11 IVRGRVLKLYRKALRTANRAPPH-ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQ 79 (81)
Q Consensus 11 ~~r~~VL~LYR~~LR~~~~~~~~-~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~~~ 79 (81)
+.+++|++|||.+||.++.+|++ .|+|+.+++|+.|++|++++||.+|+.++++|+++|+.++++.-..
T Consensus 4 ~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~ 73 (94)
T KOG3801|consen 4 VSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIG 73 (94)
T ss_pred ccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999985 6999999999999999999999999999999999999999987653
No 3
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.76 E-value=2.1e-18 Score=97.74 Aligned_cols=60 Identities=33% Similarity=0.571 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhcCCh-hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 034848 14 GRVLKLYRKALRTANRAPP-HARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLD 73 (81)
Q Consensus 14 ~~VL~LYR~~LR~~~~~~~-~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~ 73 (81)
++||+|||++||.++.||+ ..|.++...||++|++|+++|||+.|+.++..|+++|+.++
T Consensus 1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~ 61 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR 61 (61)
T ss_pred ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999997 46899999999999999999999999999999999998763
No 4
>KOG4620 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=7.4e-15 Score=86.04 Aligned_cols=66 Identities=27% Similarity=0.331 Sum_probs=59.8
Q ss_pred HhhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 034848 10 FIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCK--DRQKIRYLISEGLERLKGLDEM 75 (81)
Q Consensus 10 f~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~t--D~~~I~~ll~~g~~~l~~~~~~ 75 (81)
.-++++||+|||++||+++..|..+..-|..+|++||++|+++. |.-.|+.|+..|+++++.+...
T Consensus 5 SgLQrqVlhlYR~~lraa~~Kp~~~~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~p 72 (80)
T KOG4620|consen 5 SGLQRQVLHLYRDLLRAARGKPGAEARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSP 72 (80)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCc
Confidence 35789999999999999999998777778899999999999996 9999999999999999988654
No 5
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=99.27 E-value=3.7e-11 Score=75.78 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=65.0
Q ss_pred CCCCChhhHhhHHHHHHHHHHHHHHhhcCChh------hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 034848 2 VLPFDLQDFIVRGRVLKLYRKALRTANRAPPH------ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDE 74 (81)
Q Consensus 2 ~~~~sl~~f~~r~~VL~LYR~~LR~~~~~~~~------~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~ 74 (81)
+|-.|.+--..|++|+.|||.+.|.+..+... .-..++..||++|.+|.|+|||..|+.|+-+|..+|+.+-.
T Consensus 12 ~Pi~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~ 90 (124)
T KOG3426|consen 12 VPINSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVD 90 (124)
T ss_pred CCCccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHH
Confidence 57788899999999999999999999887541 35678999999999999999999999999999999988754
No 6
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=8e-08 Score=60.82 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034848 14 GRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQG 80 (81)
Q Consensus 14 ~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~~~~ 80 (81)
.+|--|||++||..+-.|.+.|...-.+||+||+.|+++ +|..+.-.+.+=+.=..++..+.+.+|
T Consensus 10 ~rvrlLYkriLrlHr~lp~~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~~g 75 (125)
T KOG4100|consen 10 PRVRLLYKRILRLHRGLPAELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSSAG 75 (125)
T ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 456669999999999999988999999999999999999 888888887655555555555554444
No 7
>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]
Probab=98.64 E-value=1.8e-07 Score=61.08 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=57.0
Q ss_pred CChhhHhhHHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 034848 5 FDLQDFIVRGRVLKLYRKALRTANRAPPH--ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72 (81)
Q Consensus 5 ~sl~~f~~r~~VL~LYR~~LR~~~~~~~~--~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~ 72 (81)
.+....-++++|++|||++||....|... --.|..--||..|+.|++ .|..++..||..|++++-..
T Consensus 5 ~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~ 73 (157)
T KOG3466|consen 5 YFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEW 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhh
Confidence 34455668899999999999999999862 255677889999999999 99999999999999998654
No 8
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=98.21 E-value=9.2e-06 Score=49.75 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCChhh--------HHHHHHHH----HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034848 16 VLKLYRKALRTANRAPPHA--------RDELKQTI----RQEMDKHRDCKDRQKIRYLISEGLERLKGLDEM 75 (81)
Q Consensus 16 VL~LYR~~LR~~~~~~~~~--------r~~~~~~i----R~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~ 75 (81)
|++|||.+||..+.+|... +..+..+| +.+|+.|.+.+++......+...+.-+..++.+
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~q 72 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQ 72 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999988522 26777889 999999999997777777776666655555543
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=95.88 E-value=0.087 Score=29.46 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 034848 12 VRGRVLKLYRKALRTANRAPPH--ARDELKQTIRQEMDKHRDCKDRQKIRYLI 62 (81)
Q Consensus 12 ~r~~VL~LYR~~LR~~~~~~~~--~r~~~~~~iR~eF~~nr~~tD~~~I~~ll 62 (81)
.|.....||.++|+....+|.+ .|.+.-.-+++.+.--...+|.++|+..|
T Consensus 3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 4667889999999999999974 59999999999998888899999998876
No 10
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=80.46 E-value=14 Score=24.35 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHHHHHHHHHHH
Q 034848 13 RGRVLKLYRKALRTANRAPPH--ARDELKQTIRQEMDKHRDCKDRQ---------KIRYLISEGLERLKGLDEMLD 77 (81)
Q Consensus 13 r~~VL~LYR~~LR~~~~~~~~--~r~~~~~~iR~eF~~nr~~tD~~---------~I~~ll~~g~~~l~~~~~~~~ 77 (81)
+++...||-++|.....+|.+ .|.+.....++...--+.+.|.. .|+..+.++..+|++.+-++.
T Consensus 50 ~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql~gGqIEE~i~qa~~el~m~~k~~~ 125 (145)
T KOG3365|consen 50 HERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQLQGGQIEEVIEQAEAELNMGRKMFE 125 (145)
T ss_pred HHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhc
Confidence 467778999999999999974 47777666666665555555543 466778888888888877664
No 11
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=67.88 E-value=26 Score=23.03 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhc----C-------CCCHHHHHHHHH
Q 034848 11 IVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHR----D-------CKDRQKIRYLIS 63 (81)
Q Consensus 11 ~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr----~-------~tD~~~I~~ll~ 63 (81)
|.|++-|..-++-|+ ..|.++++.+..+.++-|+... + +-||++|..-+.
T Consensus 1 M~k~efL~~L~~~L~---~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 1 MNKNEFLNELEKYLK---KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred CCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 456666666666665 5888888888888888886432 2 236766655554
No 12
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=54.52 E-value=12 Score=24.58 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=25.6
Q ss_pred CChhhHhhHHHHHHHHHHHHHH--hhcCChhhHHHHHHHHH
Q 034848 5 FDLQDFIVRGRVLKLYRKALRT--ANRAPPHARDELKQTIR 43 (81)
Q Consensus 5 ~sl~~f~~r~~VL~LYR~~LR~--~~~~~~~~r~~~~~~iR 43 (81)
..=+||..|.++..|+|.+++. .++|+-..-..+.+++.
T Consensus 13 p~q~~fl~r~~t~~lfr~i~~~~~~k~w~f~~SplyLdfL~ 53 (138)
T PF11946_consen 13 PDQDHFLNREQTRELFRKIFAKGKKKKWRFNHSPLYLDFLA 53 (138)
T ss_pred chhhccCCHHHHHHHHHHHHHhcccCCccccCCHHHHHHHc
Confidence 3458999999999999999943 34455322233334443
No 13
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=50.18 E-value=87 Score=23.29 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 034848 11 IVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRD------CKDRQKIRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 11 ~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~------~tD~~~I~~ll~~g~~~l~~~~~~~~~ 78 (81)
+.-.+|+.+|..+++....+. .+|+-+.+-.. .+.|..+..++..|+..|..+++.++.
T Consensus 252 PAa~Rlle~y~~l~klL~nL~---------~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~i 316 (325)
T PF06694_consen 252 PAANRLLELYKMLLKLLGNLA---------TLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLAI 316 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhHH
Confidence 455899999999998876653 33444333222 234567889999999999999988763
No 14
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=43.22 E-value=22 Score=26.06 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHH
Q 034848 37 ELKQTIRQEMDKHRDCKDRQKIR 59 (81)
Q Consensus 37 ~~~~~iR~eF~~nr~~tD~~~I~ 59 (81)
+-+.+++.||+.|+.+|.....+
T Consensus 256 eQL~RLK~EF~enRYlTEqRRQ~ 278 (342)
T KOG0493|consen 256 EQLQRLKAEFQENRYLTEQRRQE 278 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 44689999999999998665443
No 15
>PRK05629 hypothetical protein; Validated
Probab=42.73 E-value=1.2e+02 Score=21.62 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCh--hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034848 17 LKLYRKALRTANRAPP--HARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEM 75 (81)
Q Consensus 17 L~LYR~~LR~~~~~~~--~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~ 75 (81)
-++|+.+-+.+...+. -....+..||++.|+++.---+++.++.|+......+..+..-
T Consensus 108 kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~E 168 (318)
T PRK05629 108 KSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASA 168 (318)
T ss_pred hHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHH
Confidence 3567765555543321 2356678999999998876678999999988776666655543
No 16
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=39.35 E-value=50 Score=17.29 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034848 56 QKIRYLISEGLERLKGLDE 74 (81)
Q Consensus 56 ~~I~~ll~~g~~~l~~~~~ 74 (81)
..|+.||+.+.++||-+..
T Consensus 24 kr~rrLIRaa~k~lealc~ 42 (44)
T PF08134_consen 24 KRIRRLIRAARKQLEALCQ 42 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3577888888888887653
No 17
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=39.24 E-value=1.3e+02 Score=21.27 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhc--------------CCCCHHHHHHHHHHHH
Q 034848 14 GRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHR--------------DCKDRQKIRYLISEGL 66 (81)
Q Consensus 14 ~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr--------------~~tD~~~I~~ll~~g~ 66 (81)
..|+..||.+++...-..+..-.-++..+-+-..++. .++|.+++..+|.+|-
T Consensus 116 ~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS 182 (254)
T cd01459 116 EGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS 182 (254)
T ss_pred HHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh
Confidence 6899999999987665544222234444433333333 2467777777666553
No 18
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=38.81 E-value=78 Score=18.17 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 034848 34 ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLK 70 (81)
Q Consensus 34 ~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~ 70 (81)
.-.|.-.+...+|-++.+..+.+..+.-++..+++++
T Consensus 29 alkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~k 65 (66)
T PF07438_consen 29 ALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDFK 65 (66)
T ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Confidence 4567778999999999999999888888877777653
No 19
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.90 E-value=23 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCCChhhHhhHHHHHHHHHHHHHHhhc
Q 034848 3 LPFDLQDFIVRGRVLKLYRKALRTANR 29 (81)
Q Consensus 3 ~~~sl~~f~~r~~VL~LYR~~LR~~~~ 29 (81)
++++.+.--...+++.+||+.++..-.
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 356777777888999999999987644
No 20
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.28 E-value=87 Score=24.40 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 034848 35 RDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 35 r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~~ 78 (81)
|..++..|++.|++|.++.+.-.-.+.....+.....+++.+..
T Consensus 368 Rs~FL~~I~~af~~~p~l~nLl~~pyF~~~~~~~~~~~R~vV~~ 411 (473)
T COG0362 368 RSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAY 411 (473)
T ss_pred hHHHHHHHHHHHhcCcchhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999998876543333333334444445555443
No 21
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=37.10 E-value=40 Score=23.80 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCCCCHH--HHHHHHHHHHHHHHHH
Q 034848 37 ELKQTIRQEMDKHRDCKDRQ--KIRYLISEGLERLKGL 72 (81)
Q Consensus 37 ~~~~~iR~eF~~nr~~tD~~--~I~~ll~~g~~~l~~~ 72 (81)
+-...+-.||+-|+-+|-+. +|...|...++++++|
T Consensus 169 ~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIW 206 (261)
T KOG0489|consen 169 YQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIW 206 (261)
T ss_pred hhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHH
Confidence 33578899999999999775 6667788888887765
No 22
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=34.78 E-value=1.2e+02 Score=19.12 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034848 12 VRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLD 77 (81)
Q Consensus 12 ~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~ 77 (81)
.++++-+|++++-.+.-.-......|.+...|+-+++. .+++.|+.+....+.++..+-...+
T Consensus 42 N~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQp---~~de~i~tmW~TSrqqi~di~~~~s 104 (109)
T PHA02571 42 NRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQP---YTDELIETMWETSRQQILDMINSAS 104 (109)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888877776655555778889999998877 6778899999999999877665543
No 23
>PRK10635 bacterioferritin; Provisional
Probab=31.94 E-value=1.3e+02 Score=19.68 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhcCCh-hhHHHHHHHHHH
Q 034848 14 GRVLKLYRKALRTANRAPP-HARDELKQTIRQ 44 (81)
Q Consensus 14 ~~VL~LYR~~LR~~~~~~~-~~r~~~~~~iR~ 44 (81)
..|+..|+.+++.+....+ .++..+...+.+
T Consensus 95 ~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~d 126 (158)
T PRK10635 95 LEGAKDLREAIAYADSVHDYVSRDMMIEILAD 126 (158)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999987665 456666555554
No 24
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.52 E-value=1e+02 Score=19.25 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034848 35 RDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEML 76 (81)
Q Consensus 35 r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~ 76 (81)
-..+..+|++.|+++.-.-||..++.|+......+..+.+-+
T Consensus 126 ~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El 167 (172)
T PF06144_consen 126 EQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNEL 167 (172)
T ss_dssp TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHH
Confidence 345678999999998766799999999988877777666544
No 25
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=31.40 E-value=81 Score=18.18 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCChhhHhhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHH
Q 034848 4 PFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDC---KDRQKIRYLISE 64 (81)
Q Consensus 4 ~~sl~~f~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~---tD~~~I~~ll~~ 64 (81)
+++|.-|.+|.++...-- .....+++..++.|+..|-+.-++..-- -|.+.|+..+++
T Consensus 12 ~FkL~Gl~Lr~eA~~~l~---~~l~~~~~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~Av~e 72 (73)
T PF12213_consen 12 AFKLRGLSLRSEASKYLA---EQLQSLSEEEREDWLDKIIDAVQKQPLSSSIVDKEHIESAVKE 72 (73)
T ss_dssp HHHHTT-EE-HHHHHHHH---HHTTTS-TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHHHHHH
T ss_pred HhhhccceecHHHHHHHH---HHHccCCHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHc
Confidence 344555555655554432 2224445567888999999988876522 266777777654
No 26
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=29.80 E-value=92 Score=24.10 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHH---HHHHHHHHHHHHHHHHHHHHh
Q 034848 35 RDELKQTIRQEMDKHRDCKDRQK---IRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 35 r~~~~~~iR~eF~~nr~~tD~~~---I~~ll~~g~~~l~~~~~~~~~ 78 (81)
|..++..|++.|++|.++.|..- ....+.+++.. |++++.+
T Consensus 373 RsvfL~~I~~a~~~~p~l~nll~d~fF~~~v~~~q~~---wr~vV~~ 416 (487)
T KOG2653|consen 373 RSVFLDRIKKAYQRNPDLANLLLDPFFAKAVEEAQDS---WRRVVAL 416 (487)
T ss_pred eHHHHHHHHHHHhcCccHhhhccCHHHHHHHHHHHHH---HHHHHHH
Confidence 67888999999999999775432 33344444444 5555543
No 27
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.15 E-value=1.9e+02 Score=21.18 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=40.2
Q ss_pred HhhHHHHHHHHHHHHHHhhcCCh---hhHHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHH
Q 034848 10 FIVRGRVLKLYRKALRTANRAPP---HARDELKQTIRQEMD-KHRDCKDRQKIRYLISEGLERL 69 (81)
Q Consensus 10 f~~r~~VL~LYR~~LR~~~~~~~---~~r~~~~~~iR~eF~-~nr~~tD~~~I~~ll~~g~~~l 69 (81)
-+-|.+.-.+++.+......|.. ..++.....|+..+. .+...++.+.|+.++..|.-+.
T Consensus 119 r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~ 182 (297)
T KOG0810|consen 119 RTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEV 182 (297)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHH
Confidence 34345555666888777777654 246666666666655 4454788899999998876554
No 28
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=26.64 E-value=1.2e+02 Score=22.31 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCC-----h----hhHHHHHHHHHHHHHhhc
Q 034848 18 KLYRKALRTANRAP-----P----HARDELKQTIRQEMDKHR 50 (81)
Q Consensus 18 ~LYR~~LR~~~~~~-----~----~~r~~~~~~iR~eF~~nr 50 (81)
..-+++-+.+.-.| + ++|..|++.|++||++|-
T Consensus 176 eflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 176 EFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred HHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcC
Confidence 34455666666665 1 469999999999999986
No 29
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=25.52 E-value=1.7e+02 Score=20.54 Aligned_cols=40 Identities=28% Similarity=0.471 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH----HHhhcCC-------------hhhHHHHHHHHHHHHHhhcCCC
Q 034848 14 GRVLKLYRKAL----RTANRAP-------------PHARDELKQTIRQEMDKHRDCK 53 (81)
Q Consensus 14 ~~VL~LYR~~L----R~~~~~~-------------~~~r~~~~~~iR~eF~~nr~~t 53 (81)
.+.|.+||++| |.+...| +++...|+.++++.|+++-...
T Consensus 102 ~~~L~~yrq~LL~GLr~aa~Kp~NlsKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp~d 158 (211)
T PF02093_consen 102 REALRLYRQCLLAGLRGAARKPTNLSKVREVTQGPNESPSAFLERLREAYRKYTPFD 158 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----S--TTTTTGGGHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 57899999965 4443332 3457789999999999997654
No 30
>COG3236 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.92 E-value=81 Score=21.07 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=19.9
Q ss_pred CChhhHhhHHHHH----HHHHHHHHHhhc
Q 034848 5 FDLQDFIVRGRVL----KLYRKALRTANR 29 (81)
Q Consensus 5 ~sl~~f~~r~~VL----~LYR~~LR~~~~ 29 (81)
+|-+|+++.++++ .-|+..++.++.
T Consensus 45 ~taEhY~~a~K~~~~~D~~~~~aIlaars 73 (162)
T COG3236 45 PTAEHYFQAQKFLEFLDPAYREAILAARS 73 (162)
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHhcCC
Confidence 5678988888888 678888887754
No 31
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=23.99 E-value=1.5e+02 Score=16.88 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=38.3
Q ss_pred hcCCh--hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034848 28 NRAPP--HARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQG 80 (81)
Q Consensus 28 ~~~~~--~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~~~~ 80 (81)
..||. ..+..+..++-..|...+..+ ..+|...|..--.+...+.+.+...|
T Consensus 4 ~~~P~k~~~r~~iL~~l~~~f~~g~~y~-E~EVN~~L~~~~~D~a~LRR~LVd~g 57 (71)
T PF09860_consen 4 KRWPSKRKKRLVILEYLASRFEPGREYS-EKEVNEILKRFFDDYATLRRYLVDYG 57 (71)
T ss_pred cccCccHHHHHHHHHHHHHhCCCCCccC-HHHHHHHHHHHcccHHHHHHHHHHcC
Confidence 35776 347788899999996665554 55677788888888888888877655
No 32
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.76 E-value=2e+02 Score=23.89 Aligned_cols=63 Identities=25% Similarity=0.212 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhcCChhhH--H---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034848 13 RGRVLKLYRKALRTANRAPPHAR--D---ELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEM 75 (81)
Q Consensus 13 r~~VL~LYR~~LR~~~~~~~~~r--~---~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~ 75 (81)
-.+|+-.+|++||.|....+..+ + .+..+-=--|+++-+.-.+..|+.||+.-+..+..++.+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~~iti~~I~~LI~lik~n~~~l~~s 723 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGNDGITIKHIESLIKLIKTNAKSLKSS 723 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhhhcccc
Confidence 36899999999999988866432 2 223333345677777777889999999888877666543
No 33
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=23.55 E-value=1.1e+02 Score=19.06 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=11.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcC
Q 034848 56 QKIRYLIS--EGLERLKGLDEMLDMQG 80 (81)
Q Consensus 56 ~~I~~ll~--~g~~~l~~~~~~~~~~~ 80 (81)
..|+..+. .-..++..+...+..||
T Consensus 40 ~kiE~~~~~l~qgeqI~kL~e~V~~QG 66 (102)
T PF01519_consen 40 TKIENKLDQLAQGEQINKLTEKVDKQG 66 (102)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 33334444444444443
No 34
>PRK07914 hypothetical protein; Reviewed
Probab=22.16 E-value=3e+02 Score=19.57 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=37.9
Q ss_pred HHHHHHHHHhh---cCChh-hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 034848 18 KLYRKALRTAN---RAPPH-ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDE 74 (81)
Q Consensus 18 ~LYR~~LR~~~---~~~~~-~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~ 74 (81)
++|+.+-+.+. .+.+. .......||++.+++..-.-+++.++.|+......+..+..
T Consensus 109 k~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~ 169 (320)
T PRK07914 109 ALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELAS 169 (320)
T ss_pred HHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHH
Confidence 66776655432 22222 45566899999999776566899999998877555555443
No 35
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.77 E-value=1.9e+02 Score=17.70 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHHHH
Q 034848 39 KQTIRQEMDKHRDCK--DRQKIRYLISEGLERLKGLD 73 (81)
Q Consensus 39 ~~~iR~eF~~nr~~t--D~~~I~~ll~~g~~~l~~~~ 73 (81)
+...++||.+|..++ ..+.|..-|.-.+-.++.+-
T Consensus 8 ~~~Tk~elqan~el~~LS~~~iA~~Ln~t~~~lekil 44 (97)
T COG4367 8 KQRTKQELQANFELCPLSDEEIATALNWTEVKLEKIL 44 (97)
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHhCCCHHHHHHHH
Confidence 467788999998776 33556666655555555444
No 36
>PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=21.67 E-value=89 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHH
Q 034848 12 VRGRVLKLYRKALRT 26 (81)
Q Consensus 12 ~r~~VL~LYR~~LR~ 26 (81)
.|.+++..|+.++|.
T Consensus 83 VRNK~veAYqEImrM 97 (99)
T PRK01699 83 VRDNLIENYKSLINM 97 (99)
T ss_pred HHHHHHHHHHHHHhC
Confidence 478999999999884
No 37
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.62 E-value=96 Score=19.70 Aligned_cols=25 Identities=4% Similarity=0.045 Sum_probs=14.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH
Q 034848 42 IRQEMDKHRDCKDRQKIRYLISEGLE 67 (81)
Q Consensus 42 iR~eF~~nr~~tD~~~I~~ll~~g~~ 67 (81)
-|-+|=+.|++|+.| |+.++..+..
T Consensus 25 ~k~~FL~sKGLt~~E-I~~al~~a~~ 49 (136)
T PF04695_consen 25 KKIAFLESKGLTEEE-IDEALGRAGS 49 (136)
T ss_dssp HHHHHHHHCT--HHH-HHHHHHHHT-
T ss_pred HHHHHHHcCCCCHHH-HHHHHHhcCC
Confidence 355677777887544 7777766543
No 38
>PRK05907 hypothetical protein; Provisional
Probab=21.58 E-value=3.2e+02 Score=19.76 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=30.4
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHHHHH
Q 034848 30 APPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEG-LERLKG 71 (81)
Q Consensus 30 ~~~~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g-~~~l~~ 71 (81)
|+...-..+..||.+.+++..---+++.++.++... ...|..
T Consensus 131 ~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~ 173 (311)
T PRK05907 131 WFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFE 173 (311)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHH
Confidence 443334667899999999888777889999998855 344433
No 39
>COG4086 Predicted secreted protein [Function unknown]
Probab=21.19 E-value=3.5e+02 Score=19.98 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 034848 35 RDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERL 69 (81)
Q Consensus 35 r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l 69 (81)
+..+...|+.++-+++. .||+.|+.++......+
T Consensus 193 ~a~l~~~VK~~~a~~~~-~~~~dirkvv~dv~~~y 226 (299)
T COG4086 193 AAALMAEVKEEVAKQKV-DDPADIRKVVDDVANNY 226 (299)
T ss_pred HHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHc
Confidence 55677999999999886 88999999988776554
No 40
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=20.75 E-value=1.1e+02 Score=15.24 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCC
Q 034848 18 KLYRKALRTANRAPPHARDELKQTIRQEMDKHRDC 52 (81)
Q Consensus 18 ~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~ 52 (81)
|-+-.+||...++.. -.-.+|..|....++
T Consensus 4 s~~~kilrsiak~fk-----gvgk~rkqfk~asdl 33 (37)
T PF08025_consen 4 SGFSKILRSIAKFFK-----GVGKVRKQFKEASDL 33 (37)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHhHHhhc
Confidence 445677787777654 246778888765544
Done!